Wall clock time and date at job start Wed Apr 1 2020 04:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 N 1.46498 * 109.47172 * 180.02562 * 3 2 1 5 5 C 1.46507 * 120.00285 * 270.00718 * 4 3 2 6 6 C 1.39044 * 119.99976 * 90.00306 * 4 3 2 7 7 C 1.39215 * 119.93353 * 180.02562 * 6 4 3 8 8 C 1.37612 * 120.07295 * 180.02562 * 7 6 4 9 9 C 1.39794 * 119.92921 * 0.02562 * 8 7 6 10 10 C 1.47517 * 120.07160 * 179.97438 * 9 8 7 11 11 O 1.21598 * 119.99856 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00224 * 179.97438 * 10 9 8 13 13 C 1.46503 * 119.99900 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.52690 * 35.08239 * 13 12 10 15 15 C 1.53040 * 109.49536 * 155.16544 * 13 12 10 16 16 C 1.53043 * 109.53566 * 181.31496 * 15 13 12 17 17 C 1.53185 * 109.31380 * 298.63192 * 16 15 13 18 18 N 1.46929 * 108.77590 * 54.64014 * 17 16 15 19 19 C 1.36936 * 120.63495 * 126.41109 * 18 17 16 20 20 H 1.07998 * 119.99901 * 207.67317 * 19 18 17 21 21 C 1.38808 * 119.99799 * 27.66612 * 19 18 17 22 22 N 1.31615 * 119.99919 * 17.37347 * 21 19 18 23 23 Si 1.86803 * 119.99890 * 197.36546 * 21 19 18 24 24 H 1.48503 * 109.47142 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46750 * 120.00271 * 23 21 19 26 26 H 1.48496 * 109.47304 * 240.00264 * 23 21 19 27 27 C 1.46929 * 118.73367 * 306.39079 * 18 17 16 28 28 C 1.39801 * 119.86101 * 0.25603 * 9 8 7 29 29 C 1.37609 * 119.92859 * 359.46250 * 28 9 8 30 30 H 1.08992 * 109.47240 * 59.99731 * 1 2 3 31 31 H 1.09006 * 109.46716 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46991 * 299.99115 * 1 2 3 33 33 H 1.09006 * 109.47148 * 240.00263 * 2 1 3 34 34 H 1.09000 * 109.47403 * 120.00904 * 2 1 3 35 35 H 1.08997 * 109.46480 * 60.00572 * 3 2 1 36 36 H 1.08992 * 109.47298 * 300.00233 * 3 2 1 37 37 H 1.08997 * 109.46462 * 269.99948 * 5 4 3 38 38 H 1.09002 * 109.46840 * 29.99681 * 5 4 3 39 39 H 1.08995 * 109.47330 * 150.00110 * 5 4 3 40 40 H 1.07999 * 119.96596 * 0.02562 * 7 6 4 41 41 H 1.08000 * 120.03556 * 180.02562 * 8 7 6 42 42 H 0.96996 * 120.00077 * 0.02562 * 12 10 9 43 43 H 1.09003 * 109.45947 * 301.33358 * 15 13 12 44 44 H 1.09001 * 109.45960 * 61.31189 * 15 13 12 45 45 H 1.09004 * 109.49504 * 178.68038 * 16 15 13 46 46 H 1.08995 * 109.49650 * 58.59041 * 16 15 13 47 47 H 1.09001 * 109.59288 * 294.84864 * 17 16 15 48 48 H 1.09006 * 109.58566 * 174.41925 * 17 16 15 49 49 H 0.97007 * 119.99487 * 179.97438 * 22 21 19 50 50 H 1.09000 * 109.58514 * 173.39639 * 27 18 17 51 51 H 1.09006 * 109.58458 * 293.67517 * 27 18 17 52 52 H 1.07994 * 120.03441 * 179.74276 * 28 9 8 53 53 H 1.07998 * 119.96693 * 180.29605 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2381 1.4422 1.2678 6 6 4.1997 1.4427 -1.2051 7 6 5.5919 1.4422 -1.2040 8 6 6.2823 1.4430 -2.3944 9 6 5.5843 1.4449 -3.6056 10 6 6.3212 1.4463 -4.8835 11 8 7.5372 1.4454 -4.8840 12 7 5.6469 1.4476 -6.0504 13 6 6.3788 1.4484 -7.3194 14 1 7.2889 0.8575 -7.2155 15 6 5.4997 0.8438 -8.4165 16 6 6.2752 0.8141 -9.7356 17 6 6.6391 2.2456 -10.1417 18 7 7.3605 2.8832 -9.0318 19 6 8.5840 3.4630 -9.2365 20 1 9.2951 3.5239 -8.4260 21 6 8.9103 3.9724 -10.4858 22 7 7.9621 4.2147 -11.3659 23 14 10.6953 4.3142 -10.9180 24 1 11.5606 3.9589 -9.7647 25 1 11.0837 3.4996 -12.0973 26 1 10.8604 5.7554 -11.2358 27 6 6.7439 2.8871 -7.6982 28 6 4.1863 1.4513 -3.6033 29 6 3.5017 1.4447 -2.4096 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5140 0.8899 35 1 1.6767 1.9562 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 4.4199 2.4697 1.5826 38 1 3.6493 0.9281 2.0276 39 1 5.1905 0.9284 1.1369 40 1 6.1306 1.4412 -0.2680 41 1 7.3623 1.4422 -2.3929 42 1 4.6769 1.4479 -6.0500 43 1 5.2182 -0.1718 -8.1378 44 1 4.6015 1.4495 -8.5372 45 1 5.6569 0.3619 -10.5110 46 1 7.1862 0.2291 -9.6089 47 1 5.7297 2.8068 -10.3568 48 1 7.2754 2.2239 -11.0265 49 1 8.1902 4.5710 -12.2388 50 1 7.4493 3.2887 -6.9707 51 1 5.8445 3.5027 -7.7133 52 1 3.6442 1.4570 -4.5373 53 1 2.4217 1.4448 -2.4071 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009733720.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:54 Heat of formation + Delta-G solvation = -7.948133 kcal Electronic energy + Delta-G solvation = -29991.567248 eV Core-core repulsion = 26055.520385 eV Total energy + Delta-G solvation = -3936.046864 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.32784 -40.27078 -38.93758 -37.42563 -35.94499 -34.45354 -34.06076 -32.34329 -32.01480 -31.43418 -29.76501 -28.40012 -27.26702 -26.26912 -24.16150 -23.87033 -23.20711 -22.99180 -21.93936 -21.20288 -20.78204 -19.07449 -18.72243 -17.83194 -17.34270 -16.86787 -16.44631 -16.15150 -16.01943 -15.78812 -15.66162 -15.49186 -15.21098 -14.89984 -14.82158 -14.74375 -14.43185 -14.20902 -14.00288 -13.91009 -13.45580 -13.38418 -13.29652 -13.06593 -13.02298 -12.78095 -12.76286 -12.64802 -12.54783 -12.19445 -12.10767 -11.97289 -11.75955 -11.75258 -11.57639 -11.51419 -11.30187 -10.86824 -10.79764 -10.62291 -10.09534 -9.96286 -8.70385 -8.26722 -7.91297 -5.36521 0.09952 0.50301 1.42665 1.43976 1.56267 1.97902 2.13496 2.22011 2.50857 3.01121 3.22254 3.69827 3.78957 3.83481 3.92669 3.99656 4.06489 4.11771 4.12512 4.25891 4.29683 4.39141 4.45710 4.48280 4.48594 4.57210 4.60841 4.67008 4.71362 4.76448 4.81278 4.92092 4.92808 4.97323 5.02398 5.07901 5.13053 5.16032 5.22031 5.22889 5.26190 5.27943 5.36298 5.47005 5.48443 5.53033 5.59934 5.62721 5.76279 5.77877 6.29497 6.36191 6.46506 6.67449 7.12109 7.35551 7.81663 8.31734 9.14400 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.020405 B = 0.001996 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.904133 B =14025.886437 C =14873.715660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.115 3.885 4 N -0.624 5.624 5 C 0.082 3.918 6 C 0.242 3.758 7 C -0.213 4.213 8 C -0.024 4.024 9 C -0.218 4.218 10 C 0.555 3.445 11 O -0.597 6.597 12 N -0.706 5.706 13 C 0.143 3.857 14 H 0.054 0.946 15 C -0.104 4.104 16 C -0.130 4.130 17 C 0.171 3.829 18 N -0.607 5.607 19 C -0.267 4.267 20 H 0.051 0.949 21 C -0.045 4.045 22 N -0.928 5.928 23 Si 0.966 3.034 24 H -0.276 1.276 25 H -0.282 1.282 26 H -0.287 1.287 27 C 0.145 3.855 28 C -0.028 4.028 29 C -0.207 4.207 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.056 0.944 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.143 0.857 41 H 0.116 0.884 42 H 0.412 0.588 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.046 0.954 47 H 0.007 0.993 48 H 0.055 0.945 49 H 0.253 0.747 50 H 0.026 0.974 51 H 0.022 0.978 52 H 0.147 0.853 53 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.548 -10.080 26.055 34.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.178 4.178 3 C -0.007 4.007 4 N -0.331 5.331 5 C -0.060 4.060 6 C 0.136 3.864 7 C -0.235 4.235 8 C -0.044 4.044 9 C -0.223 4.223 10 C 0.345 3.655 11 O -0.479 6.479 12 N -0.358 5.358 13 C 0.036 3.964 14 H 0.073 0.927 15 C -0.142 4.142 16 C -0.169 4.169 17 C 0.046 3.954 18 N -0.331 5.331 19 C -0.397 4.397 20 H 0.069 0.931 21 C -0.241 4.241 22 N -0.574 5.574 23 Si 0.794 3.206 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.214 1.214 27 C 0.018 3.982 28 C -0.048 4.048 29 C -0.229 4.229 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.161 0.839 41 H 0.134 0.866 42 H 0.250 0.750 43 H 0.106 0.894 44 H 0.096 0.904 45 H 0.105 0.895 46 H 0.065 0.935 47 H 0.025 0.975 48 H 0.074 0.926 49 H 0.062 0.938 50 H 0.044 0.956 51 H 0.039 0.961 52 H 0.164 0.836 53 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -18.800 -10.002 26.104 33.688 hybrid contribution 1.072 0.556 -0.577 1.338 sum -17.728 -9.446 25.526 32.482 Atomic orbital electron populations 1.21694 0.94230 1.02227 1.02528 1.21915 0.96755 0.96998 1.02106 1.21742 0.77862 0.97092 1.04037 1.46687 1.05842 1.77426 1.03098 1.21869 0.97632 1.02101 0.84437 1.18156 0.91107 0.90185 0.86945 1.20736 0.92549 1.11956 0.98307 1.20999 0.99853 0.92298 0.91282 1.19556 0.94596 1.16309 0.91882 1.18779 0.86854 0.74904 0.84947 1.90754 1.15997 1.52779 1.88343 1.45783 1.10651 1.74733 1.04633 1.21232 0.95261 0.96945 0.82939 0.92732 1.21617 0.97860 1.01503 0.93195 1.22021 0.99654 0.97859 0.97380 1.20742 0.94062 0.89850 0.90777 1.44243 1.19517 1.64719 1.04647 1.19416 0.91389 1.32038 0.96878 0.93148 1.25727 1.01421 0.98808 0.98136 1.70176 1.32042 1.47925 1.07265 0.85234 0.80351 0.77229 0.77799 1.20037 1.20820 1.21360 1.21213 0.95350 0.94750 0.86880 1.21227 0.91573 0.92716 0.99247 1.20823 1.00840 1.11124 0.90146 0.92137 0.92541 0.91836 0.92738 0.92005 0.89025 0.89966 0.92498 0.89610 0.91055 0.83903 0.86605 0.74972 0.89448 0.90390 0.89496 0.93510 0.97529 0.92614 0.93814 0.95576 0.96063 0.83559 0.83115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.91 71.98 0.71 -0.09 16 2 C -0.14 -1.03 6.26 30.59 0.19 -0.84 16 3 C 0.11 0.86 5.15 86.38 0.44 1.31 16 4 N -0.62 -7.19 2.99 -722.23 -2.16 -9.35 16 5 C 0.08 0.64 10.18 127.77 1.30 1.94 16 6 C 0.24 4.09 6.55 38.47 0.25 4.34 16 7 C -0.21 -4.23 9.18 22.36 0.21 -4.03 16 8 C -0.02 -0.64 9.58 22.50 0.22 -0.43 16 9 C -0.22 -5.97 5.88 -20.08 -0.12 -6.09 16 10 C 0.55 19.52 7.73 86.69 0.67 20.19 16 11 O -0.60 -27.13 16.00 -4.03 -0.06 -27.19 16 12 N -0.71 -21.74 5.03 -445.34 -2.24 -23.98 16 13 C 0.14 5.43 2.60 45.07 0.12 5.55 16 14 H 0.05 2.45 7.58 -2.39 -0.02 2.43 16 15 C -0.10 -3.23 5.35 30.62 0.16 -3.06 16 16 C -0.13 -4.81 6.08 30.67 0.19 -4.63 16 17 C 0.17 8.41 5.31 86.36 0.46 8.87 16 18 N -0.61 -33.02 3.00 -699.09 -2.09 -35.12 16 19 C -0.27 -16.09 9.59 84.03 0.81 -15.29 16 20 H 0.05 3.13 7.89 -2.91 -0.02 3.10 16 21 C -0.05 -2.66 4.91 84.86 0.42 -2.25 16 22 N -0.93 -56.33 11.19 21.65 0.24 -56.09 16 23 Si 0.97 47.54 29.59 68.60 2.03 49.57 16 24 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 25 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 26 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 27 C 0.15 6.86 6.09 86.36 0.53 7.39 16 28 C -0.03 -0.55 9.53 22.50 0.21 -0.34 16 29 C -0.21 -3.36 9.18 22.36 0.21 -3.15 16 30 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.06 0.33 8.14 -2.38 -0.02 0.31 16 32 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 34 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.09 0.43 8.07 -2.39 -0.02 0.41 16 36 H 0.08 0.59 6.17 -2.39 -0.01 0.58 16 37 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.09 0.36 8.07 -2.39 -0.02 0.34 16 39 H 0.07 0.58 6.17 -2.39 -0.01 0.56 16 40 H 0.14 2.23 6.11 -2.91 -0.02 2.21 16 41 H 0.12 3.37 7.64 -2.91 -0.02 3.35 16 42 H 0.41 9.16 6.62 -92.71 -0.61 8.55 16 43 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 46 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 48 H 0.06 3.10 6.04 -2.38 -0.01 3.09 16 49 H 0.25 14.65 8.31 -92.70 -0.77 13.88 16 50 H 0.03 1.36 7.93 -2.39 -0.02 1.34 16 51 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 52 H 0.15 2.08 6.39 -2.91 -0.02 2.06 16 53 H 0.15 1.66 6.11 -2.91 -0.02 1.64 16 Total: -1.00 -78.47 414.97 2.97 -75.51 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.28 Total: 17.26 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 6.97 Total: 9.39 kcal Atomic # 7 Polarization: -118.28 SS G_CDS: -6.25 Total: -124.53 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.06 Total: -27.19 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.57 kcal Total: -78.47 2.97 -75.51 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009733720.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.559 kcal (2) G-P(sol) polarization free energy of solvation -78.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds