Wall clock time and date at job start Wed Apr 1 2020 03:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47403 * 2 1 4 4 C 1.53006 * 109.46915 * 120.00164 * 2 1 3 5 5 C 1.50697 * 109.47098 * 174.99953 * 4 2 1 6 6 C 1.35458 * 126.06795 * 269.68780 * 5 4 2 7 7 N 1.35532 * 108.86912 * 180.26316 * 6 5 4 8 8 H 0.97004 * 125.67485 * 180.02562 * 7 6 5 9 9 C 1.37647 * 108.64775 * 359.97438 * 7 6 5 10 10 C 1.46681 * 126.23376 * 179.97438 * 9 7 6 11 11 O 1.21691 * 120.00407 * 180.02562 * 10 9 7 12 12 N 1.34778 * 120.00033 * 359.97438 * 10 9 7 13 13 C 1.46498 * 120.00480 * 180.02562 * 12 10 9 14 14 H 1.09004 * 115.54908 * 350.68467 * 13 12 10 15 15 C 1.53020 * 117.50619 * 136.41454 * 13 12 10 16 16 C 1.52814 * 117.50354 * 205.00214 * 13 12 10 17 17 C 1.53190 * 117.71157 * 144.89430 * 16 13 12 18 18 C 1.53348 * 108.76758 * 158.88795 * 17 16 13 19 19 N 1.46836 * 108.81688 * 51.30796 * 18 17 16 20 20 C 1.36942 * 120.38594 * 123.11938 * 19 18 17 21 21 H 1.08001 * 119.99639 * 331.80746 * 20 19 18 22 22 C 1.38805 * 120.00054 * 151.79799 * 20 19 18 23 23 N 1.31620 * 119.99598 * 159.30525 * 22 20 19 24 24 Si 1.86795 * 120.00532 * 339.30455 * 22 20 19 25 25 H 1.48501 * 109.46998 * 94.24406 * 24 22 20 26 26 H 1.48494 * 109.47576 * 214.24915 * 24 22 20 27 27 H 1.48499 * 109.47024 * 334.25088 * 24 22 20 28 28 C 1.46851 * 119.23524 * 303.10313 * 19 18 17 29 29 C 1.53183 * 117.71449 * 0.13765 * 16 13 12 30 30 C 1.37867 * 107.53331 * 0.02562 * 9 7 6 31 31 H 1.08995 * 109.47269 * 300.00193 * 1 2 3 32 32 H 1.09003 * 109.46837 * 60.00355 * 1 2 3 33 33 H 1.09001 * 109.47425 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.47269 * 239.99807 * 2 1 3 35 35 H 1.09007 * 109.47515 * 59.99648 * 3 2 1 36 36 H 1.08998 * 109.47706 * 179.97438 * 3 2 1 37 37 H 1.09004 * 109.47478 * 300.00039 * 3 2 1 38 38 H 1.08996 * 109.47363 * 54.99797 * 4 2 1 39 39 H 1.09002 * 109.47030 * 294.99855 * 4 2 1 40 40 H 1.07998 * 125.56157 * 0.22892 * 6 5 4 41 41 H 0.97004 * 120.00061 * 0.02562 * 12 10 9 42 42 H 1.09001 * 117.50570 * 214.95971 * 15 13 12 43 43 H 1.09002 * 117.50664 * 0.02562 * 15 13 12 44 44 H 1.08994 * 109.59218 * 278.67315 * 17 16 13 45 45 H 1.09001 * 109.58725 * 39.10713 * 17 16 13 46 46 H 1.09002 * 109.57918 * 291.51023 * 18 17 16 47 47 H 1.08995 * 109.58362 * 171.10956 * 18 17 16 48 48 H 0.97006 * 119.99987 * 179.97438 * 23 22 20 49 49 H 1.08998 * 109.57687 * 297.10398 * 28 19 18 50 50 H 1.09000 * 109.57914 * 176.70137 * 28 19 18 51 51 H 1.08999 * 109.58855 * 320.90628 * 29 16 13 52 52 H 1.09009 * 109.58728 * 81.33455 * 29 16 13 53 53 H 1.08003 * 126.45908 * 179.97438 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5418 -0.8295 1.1890 6 6 4.2467 -1.8501 0.6444 7 7 5.5699 -1.5932 0.7854 8 1 6.2926 -2.1643 0.4812 9 6 5.7177 -0.3866 1.4311 10 6 6.9871 0.2598 1.7809 11 8 6.9856 1.3327 2.3551 12 7 8.1551 -0.3350 1.4672 13 6 9.4230 0.3103 1.8170 14 1 9.3441 1.3339 2.1835 15 6 10.5240 -0.5707 2.4111 16 6 10.6510 -0.0472 0.9808 17 6 11.6790 1.0574 0.7165 18 6 13.0192 0.4072 0.3519 19 7 12.7951 -0.5705 -0.7205 20 6 13.4771 -0.4693 -1.9037 21 1 13.8102 0.4965 -2.2540 22 6 13.7403 -1.6079 -2.6526 23 7 14.0133 -1.5029 -3.9358 24 14 13.7071 -3.2892 -1.8393 25 1 12.3632 -3.8967 -2.0131 26 1 14.7304 -4.1632 -2.4671 27 1 14.0011 -3.1444 -0.3909 28 6 11.8314 -1.6582 -0.5094 29 6 10.4671 -1.0500 -0.1625 30 6 4.4553 0.1031 1.6902 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.6767 1.9564 0.8900 36 1 3.1300 1.4425 0.0005 37 1 1.6768 1.9563 -0.8900 38 1 1.6053 -1.7198 1.2952 39 1 1.7516 -0.1584 2.1370 40 1 3.8232 -2.7258 0.1751 41 1 8.1563 -1.1904 1.0098 42 1 11.1698 -0.1269 3.1688 43 1 10.3053 -1.6306 2.5414 44 1 11.3396 1.6825 -0.1094 45 1 11.8000 1.6661 1.6126 46 1 13.4301 -0.0975 1.2263 47 1 13.7152 1.1726 0.0088 48 1 14.1977 -2.2986 -4.4592 49 1 12.1687 -2.2908 0.3116 50 1 11.7458 -2.2521 -1.4194 51 1 9.7838 -1.8395 0.1503 52 1 10.0624 -0.5383 -1.0358 53 1 4.2167 1.0320 2.1870 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016933292.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:12 Heat of formation + Delta-G solvation = 19.371401 kcal Electronic energy + Delta-G solvation = -30177.042296 eV Core-core repulsion = 26242.180096 eV Total energy + Delta-G solvation = -3934.862200 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.37348 -40.94440 -39.60667 -37.32779 -37.20849 -34.67827 -33.62160 -32.27443 -32.07476 -30.75241 -30.10226 -27.91427 -27.17400 -26.05161 -24.75965 -24.39453 -23.13202 -22.22204 -21.43415 -21.04019 -20.39526 -19.93644 -19.39054 -18.43430 -17.36320 -17.34015 -16.69809 -16.28413 -15.95416 -15.74612 -15.49340 -15.38488 -15.30531 -15.15146 -14.68916 -14.48956 -14.42524 -14.34180 -14.25527 -14.05302 -13.67229 -13.58296 -13.48917 -13.04682 -13.02586 -12.79763 -12.67608 -12.44192 -12.33033 -12.28906 -12.12456 -11.77686 -11.64032 -11.62921 -11.55515 -11.41868 -11.35845 -11.27278 -10.82904 -10.65759 -9.86613 -9.70571 -9.07795 -8.86783 -8.16882 -5.48783 0.42437 1.27418 1.41650 1.51023 1.74793 1.91725 2.20411 2.26205 2.41026 2.89298 3.06190 3.34394 3.65571 3.75834 3.77701 3.88180 3.98342 4.05873 4.09203 4.22534 4.30510 4.34787 4.41525 4.46858 4.52255 4.57016 4.66636 4.76801 4.79219 4.84035 4.86414 4.90285 4.91318 4.91956 4.94062 5.05270 5.09825 5.10455 5.15665 5.18466 5.18652 5.27441 5.28306 5.38227 5.41371 5.49020 5.53107 5.59658 5.83044 5.87618 5.95584 6.12903 6.37340 6.56993 6.93489 7.04953 7.63609 8.03386 9.03286 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.015232 B = 0.002206 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.815882 B =12688.913042 C =13508.709827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 C -0.149 4.149 4 C -0.038 4.038 5 C -0.185 4.185 6 C 0.045 3.955 7 N -0.528 5.528 8 H 0.429 0.571 9 C -0.080 4.080 10 C 0.590 3.410 11 O -0.574 6.574 12 N -0.689 5.689 13 C 0.083 3.917 14 H 0.126 0.874 15 C -0.162 4.162 16 C -0.119 4.119 17 C -0.090 4.090 18 C 0.148 3.852 19 N -0.619 5.619 20 C -0.249 4.249 21 H 0.046 0.954 22 C -0.039 4.039 23 N -0.959 5.959 24 Si 0.952 3.048 25 H -0.271 1.271 26 H -0.314 1.314 27 H -0.259 1.259 28 C 0.126 3.874 29 C -0.088 4.088 30 C -0.109 4.109 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.042 0.958 37 H 0.049 0.951 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.207 0.793 41 H 0.406 0.594 42 H 0.115 0.885 43 H 0.108 0.892 44 H 0.048 0.952 45 H 0.087 0.913 46 H 0.041 0.959 47 H 0.053 0.947 48 H 0.261 0.739 49 H 0.040 0.960 50 H 0.048 0.952 51 H 0.082 0.918 52 H 0.051 0.949 53 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.770 -3.549 13.647 29.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 C -0.206 4.206 4 C -0.075 4.075 5 C -0.191 4.191 6 C -0.092 4.092 7 N -0.125 5.125 8 H 0.268 0.732 9 C -0.192 4.192 10 C 0.380 3.620 11 O -0.454 6.454 12 N -0.338 5.338 13 C -0.023 4.023 14 H 0.144 0.856 15 C -0.200 4.200 16 C -0.120 4.120 17 C -0.129 4.129 18 C 0.023 3.977 19 N -0.343 5.343 20 C -0.379 4.379 21 H 0.064 0.936 22 C -0.234 4.234 23 N -0.605 5.605 24 Si 0.780 3.220 25 H -0.197 1.197 26 H -0.243 1.243 27 H -0.183 1.183 28 C 0.001 3.999 29 C -0.127 4.127 30 C -0.137 4.137 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.104 0.896 39 H 0.084 0.916 40 H 0.224 0.776 41 H 0.243 0.757 42 H 0.134 0.866 43 H 0.126 0.874 44 H 0.067 0.933 45 H 0.105 0.895 46 H 0.059 0.941 47 H 0.071 0.929 48 H 0.070 0.930 49 H 0.057 0.943 50 H 0.066 0.934 51 H 0.101 0.899 52 H 0.070 0.930 53 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -25.541 -2.916 13.901 29.225 hybrid contribution 1.029 -0.986 -0.750 1.610 sum -24.513 -3.902 13.151 28.090 Atomic orbital electron populations 1.21834 0.94443 1.02247 1.01763 1.21074 0.95775 0.95683 0.98159 1.21869 1.00655 0.96788 1.01284 1.20043 0.88340 1.01445 0.97713 1.19617 0.96366 0.96075 1.07060 1.22460 0.81538 1.01800 1.03390 1.41955 1.08892 1.16802 1.44841 0.73187 1.20082 0.94083 0.92161 1.12919 1.17343 0.82752 0.84064 0.77863 1.90798 1.87451 1.22922 1.44250 1.45167 1.04343 1.24349 1.59907 1.21713 0.79036 0.97959 1.03620 0.85648 1.23683 1.00332 1.00562 0.95404 1.21789 0.97652 0.99599 0.92987 1.21539 0.94536 0.95715 1.01154 1.21038 0.95243 0.91457 0.89942 1.44402 1.44899 1.31208 1.13776 1.18861 1.30068 0.92917 0.96076 0.93627 1.25980 0.99710 1.01720 0.95947 1.69990 1.53539 1.30131 1.06866 0.85815 0.76666 0.80267 0.79212 1.19729 1.24304 1.18316 1.21340 0.89568 0.90529 0.98420 1.21460 0.97270 0.97336 0.96645 1.21277 0.90300 1.00030 1.02076 0.92646 0.92880 0.91729 0.91442 0.92882 0.93849 0.93147 0.89614 0.91637 0.77643 0.75700 0.86641 0.87402 0.93345 0.89452 0.94090 0.92876 0.93002 0.94251 0.93351 0.89916 0.93000 0.85071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.19 71.98 0.66 -0.73 16 2 C -0.09 -1.07 2.91 -10.79 -0.03 -1.10 16 3 C -0.15 -2.30 8.92 71.98 0.64 -1.66 16 4 C -0.04 -0.44 5.18 29.85 0.15 -0.28 16 5 C -0.19 -2.88 4.79 -20.12 -0.10 -2.97 16 6 C 0.05 0.53 11.80 83.48 0.99 1.51 16 7 N -0.53 -7.27 5.99 -183.62 -1.10 -8.37 16 8 H 0.43 3.61 8.19 -92.71 -0.76 2.85 16 9 C -0.08 -1.72 7.06 40.35 0.28 -1.44 16 10 C 0.59 15.67 7.79 86.45 0.67 16.34 16 11 O -0.57 -19.78 16.45 -4.32 -0.07 -19.85 16 12 N -0.69 -15.29 5.34 -446.76 -2.39 -17.68 16 13 C 0.08 2.03 6.14 44.94 0.28 2.30 16 14 H 0.13 3.44 7.40 -2.38 -0.02 3.42 16 15 C -0.16 -3.49 9.86 30.55 0.30 -3.19 16 16 C -0.12 -3.24 1.94 -52.17 -0.10 -3.34 16 17 C -0.09 -2.76 5.83 30.77 0.18 -2.58 16 18 C 0.15 5.50 6.51 86.43 0.56 6.07 16 19 N -0.62 -28.24 2.71 -698.92 -1.89 -30.13 16 20 C -0.25 -14.08 10.00 84.03 0.84 -13.24 16 21 H 0.05 2.86 8.06 -2.91 -0.02 2.83 16 22 C -0.04 -2.27 5.23 84.86 0.44 -1.82 16 23 N -0.96 -60.14 13.97 21.65 0.30 -59.84 16 24 Si 0.95 45.36 24.40 68.60 1.67 47.03 16 25 H -0.27 -11.90 6.66 99.48 0.66 -11.23 16 26 H -0.31 -15.38 7.11 99.48 0.71 -14.68 16 27 H -0.26 -11.71 6.65 99.48 0.66 -11.05 16 28 C 0.13 4.97 4.23 86.43 0.37 5.34 16 29 C -0.09 -2.67 5.37 30.77 0.17 -2.51 16 30 C -0.11 -2.35 9.26 22.57 0.21 -2.14 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.05 0.51 8.14 -2.39 -0.02 0.50 16 33 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.04 0.83 6.41 -2.39 -0.02 0.82 16 37 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.21 0.82 8.06 -2.91 -0.02 0.80 16 41 H 0.41 6.88 6.25 -92.70 -0.58 6.30 16 42 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.09 2.16 8.10 -2.39 -0.02 2.15 16 46 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.05 2.06 7.92 -2.39 -0.02 2.04 16 48 H 0.26 15.52 8.31 -92.70 -0.77 14.75 16 49 H 0.04 1.46 7.27 -2.39 -0.02 1.45 16 50 H 0.05 2.13 4.31 -2.39 -0.01 2.12 16 51 H 0.08 1.86 6.75 -2.39 -0.02 1.84 16 52 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 53 H 0.13 3.08 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -75.06 412.20 2.53 -72.53 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: -0.52 Total: 21.73 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: 6.52 Total: -5.42 kcal Atomic # 7 Polarization: -110.94 SS G_CDS: -5.08 Total: -116.02 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.07 Total: -19.85 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.67 Total: 47.03 kcal Total: -75.06 2.53 -72.53 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016933292.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.901 kcal (2) G-P(sol) polarization free energy of solvation -75.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds