Wall clock time and date at job start Wed Apr 1 2020 04:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46903 * 109.46883 * 236.95442 * 3 2 1 5 5 C 1.46846 * 110.99877 * 190.00557 * 4 3 2 6 6 C 1.53032 * 109.52249 * 185.84137 * 5 4 3 7 7 C 1.53114 * 109.27934 * 300.81879 * 6 5 4 8 8 C 1.50703 * 109.52449 * 177.55698 * 7 6 5 9 9 O 1.21280 * 119.99759 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99926 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00018 * 180.02562 * 10 8 7 12 12 C 1.53154 * 109.43464 * 275.22991 * 11 10 8 13 13 C 1.53698 * 108.87234 * 186.03857 * 12 11 10 14 14 H 1.09010 * 112.58225 * 187.93040 * 13 12 11 15 15 C 1.54604 * 107.83719 * 312.22778 * 13 12 11 16 16 C 1.54313 * 104.74839 * 88.66840 * 15 13 12 17 17 C 1.54601 * 104.75147 * 359.97438 * 16 15 13 18 18 H 1.09003 * 112.69200 * 147.07870 * 17 16 15 19 19 C 1.53137 * 109.43440 * 155.00728 * 11 10 8 20 20 N 1.48294 * 107.27730 * 64.01244 * 13 12 11 21 21 C 1.36940 * 128.21000 * 107.43250 * 20 13 12 22 22 H 1.07994 * 120.00319 * 15.37364 * 21 20 13 23 23 C 1.38813 * 119.99597 * 195.36962 * 21 20 13 24 24 N 1.31618 * 120.00075 * 9.35969 * 23 21 20 25 25 Si 1.86795 * 119.99788 * 189.36370 * 23 21 20 26 26 H 1.48503 * 109.47340 * 94.41343 * 25 23 21 27 27 H 1.48501 * 109.47087 * 214.41227 * 25 23 21 28 28 H 1.48502 * 109.47077 * 334.41008 * 25 23 21 29 29 C 1.53122 * 109.15940 * 57.65500 * 7 6 5 30 30 C 1.46849 * 110.99936 * 314.21481 * 4 3 2 31 31 H 4.40886 * 5.52268 * 179.97438 * 4 1 2 32 32 H 1.09000 * 109.46933 * 116.95837 * 3 2 1 33 33 H 1.09001 * 109.47431 * 356.95834 * 3 2 1 34 34 H 1.08993 * 109.46440 * 65.81997 * 5 4 3 35 35 H 1.09007 * 109.45340 * 305.84809 * 5 4 3 36 36 H 1.08998 * 109.50526 * 180.87464 * 6 5 4 37 37 H 1.09000 * 109.53449 * 60.78215 * 6 5 4 38 38 H 1.09005 * 109.52133 * 297.68729 * 7 6 5 39 39 H 0.97002 * 120.00597 * 0.02562 * 10 8 7 40 40 H 1.08997 * 109.43339 * 35.09383 * 11 10 8 41 41 H 1.08996 * 109.56596 * 66.22434 * 12 11 10 42 42 H 1.08992 * 109.57027 * 305.85982 * 12 11 10 43 43 H 1.08994 * 110.38494 * 207.48411 * 15 13 12 44 44 H 1.08998 * 110.38349 * 329.85272 * 15 13 12 45 45 H 1.09000 * 110.38028 * 118.81818 * 16 15 13 46 46 H 1.09005 * 110.38278 * 241.18275 * 16 15 13 47 47 H 1.08998 * 109.57282 * 54.14517 * 19 11 10 48 48 H 1.09003 * 109.67024 * 293.83783 * 19 11 10 49 49 H 0.97003 * 119.99815 * 179.97438 * 24 23 21 50 50 H 1.08994 * 109.50648 * 62.28985 * 29 7 6 51 51 H 1.09002 * 109.49957 * 182.40790 * 29 7 6 52 52 H 1.09004 * 109.46269 * 294.17181 * 30 4 3 53 53 H 1.09000 * 109.46551 * 54.14318 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1353 0.7561 1.1610 5 6 4.5834 0.9816 1.0698 6 6 5.0806 1.6402 2.3586 7 6 4.3499 2.9704 2.5610 8 6 4.7916 3.5952 3.8594 9 8 5.6106 3.0330 4.5551 10 7 4.2772 4.7791 4.2469 11 6 4.7069 5.3867 5.5088 12 6 3.8782 4.8100 6.6603 13 6 4.2320 5.5624 7.9530 14 1 3.7803 5.1116 8.8368 15 6 5.7732 5.6300 8.0549 16 6 6.1606 6.9199 7.3018 17 6 4.8171 7.5101 6.8151 18 1 4.8205 8.5999 6.7914 19 6 4.5069 6.9033 5.4381 20 7 3.8158 6.9738 7.7690 21 6 2.7581 7.6268 8.3435 22 1 2.2594 7.1979 9.2000 23 6 2.3270 8.8401 7.8249 24 7 2.8074 9.2739 6.6789 25 14 1.0651 9.8572 8.7536 26 1 1.7624 10.8573 9.6015 27 1 0.1841 10.5577 7.7849 28 1 0.2456 8.9651 9.6126 29 6 2.8410 2.7134 2.6041 30 6 2.4087 2.0238 1.3082 31 1 -1.0502 0.0001 -0.0003 32 1 3.0091 0.4667 -0.9160 33 1 3.0098 -1.0254 0.0545 34 1 4.7969 1.6337 0.2229 35 1 5.0914 0.0273 0.9303 36 1 6.1528 1.8216 2.2844 37 1 4.8806 0.9826 3.2046 38 1 4.5824 3.6430 1.7354 39 1 3.6223 5.2289 3.6903 40 1 5.7614 5.1673 5.6763 41 1 4.1069 3.7510 6.7801 42 1 2.8171 4.9340 6.4444 43 1 6.0823 5.6922 9.0983 44 1 6.2238 4.7608 7.5758 45 1 6.6602 7.6168 7.9747 46 1 6.8018 6.6855 6.4521 47 1 3.4745 7.1232 5.1663 48 1 5.1791 7.3277 4.6924 49 1 2.5058 10.1216 6.3163 50 1 2.6051 2.0726 3.4536 51 1 2.3132 3.6617 2.7052 52 1 2.6324 2.6712 0.4602 53 1 1.3372 1.8266 1.3416 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021470079.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:37 Heat of formation + Delta-G solvation = 27.846994 kcal Electronic energy + Delta-G solvation = -31375.355939 eV Core-core repulsion = 27440.861268 eV Total energy + Delta-G solvation = -3934.494671 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.63340 -40.63347 -39.31818 -35.91815 -35.55582 -34.51806 -33.18307 -31.95532 -31.74594 -31.12113 -30.96314 -28.31170 -26.54503 -24.99880 -24.82896 -24.15558 -23.11633 -21.61342 -21.03030 -20.56328 -20.27601 -19.00048 -18.84939 -17.82938 -17.60233 -16.92158 -16.67972 -16.20672 -15.94336 -15.90085 -15.72828 -15.34104 -14.86048 -14.65586 -14.54744 -14.52826 -14.14491 -13.96635 -13.76241 -13.72657 -13.51284 -13.20704 -13.09805 -13.01144 -12.82664 -12.54293 -12.53117 -12.43211 -12.23705 -12.16807 -11.93108 -11.75536 -11.56938 -11.43923 -11.33001 -11.30294 -11.12609 -11.06388 -10.96454 -10.74992 -10.48449 -9.91189 -9.28600 -8.74825 -7.81274 -5.15448 1.48473 1.50120 1.57621 1.70250 1.75290 1.91843 2.30281 2.52428 3.07272 3.36298 3.46066 3.55787 3.63635 3.78470 3.84098 4.02032 4.05305 4.21572 4.26121 4.28163 4.36663 4.37689 4.40842 4.42412 4.49979 4.54193 4.56406 4.58531 4.69493 4.73572 4.75965 4.87690 4.90672 4.93350 4.96307 5.08182 5.11762 5.12337 5.15427 5.17863 5.20026 5.28415 5.32591 5.37634 5.54421 5.56674 5.68608 5.78395 5.87243 6.02001 6.09598 6.29895 6.66589 6.69522 7.12896 7.32941 7.77814 8.59424 9.29667 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.014348 B = 0.002563 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.988327 B =10922.833275 C =12196.302585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.215 4.215 3 C 0.162 3.838 4 N -0.551 5.551 5 C 0.062 3.938 6 C -0.091 4.091 7 C -0.100 4.100 8 C 0.514 3.486 9 O -0.581 6.581 10 N -0.717 5.717 11 C 0.161 3.839 12 C -0.120 4.120 13 C 0.141 3.859 14 H 0.064 0.936 15 C -0.121 4.121 16 C -0.134 4.134 17 C 0.175 3.825 18 H 0.076 0.924 19 C -0.106 4.106 20 N -0.603 5.603 21 C -0.233 4.233 22 H 0.070 0.930 23 C -0.053 4.053 24 N -0.931 5.931 25 Si 0.967 3.033 26 H -0.291 1.291 27 H -0.295 1.295 28 H -0.275 1.275 29 C -0.102 4.102 30 C 0.061 3.939 31 H 0.241 0.759 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.052 0.948 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.115 0.885 39 H 0.405 0.595 40 H 0.079 0.921 41 H 0.051 0.949 42 H 0.039 0.961 43 H 0.062 0.938 44 H 0.072 0.928 45 H 0.054 0.946 46 H 0.072 0.928 47 H 0.047 0.953 48 H 0.055 0.945 49 H 0.247 0.753 50 H 0.056 0.944 51 H 0.080 0.920 52 H 0.047 0.953 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.143 -15.559 -15.789 22.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.215 4.215 3 C 0.036 3.964 4 N -0.277 5.277 5 C -0.065 4.065 6 C -0.129 4.129 7 C -0.121 4.121 8 C 0.302 3.698 9 O -0.461 6.461 10 N -0.367 5.367 11 C 0.056 3.944 12 C -0.161 4.161 13 C 0.033 3.967 14 H 0.083 0.917 15 C -0.160 4.160 16 C -0.173 4.173 17 C 0.067 3.933 18 H 0.094 0.906 19 C -0.146 4.146 20 N -0.324 5.324 21 C -0.362 4.362 22 H 0.088 0.912 23 C -0.247 4.247 24 N -0.579 5.579 25 Si 0.797 3.203 26 H -0.219 1.219 27 H -0.222 1.222 28 H -0.200 1.200 29 C -0.140 4.140 30 C -0.066 4.066 31 H 0.257 0.743 32 H 0.089 0.911 33 H 0.127 0.873 34 H 0.070 0.930 35 H 0.114 0.886 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.132 0.868 39 H 0.241 0.759 40 H 0.097 0.903 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.073 0.927 46 H 0.091 0.909 47 H 0.066 0.934 48 H 0.074 0.926 49 H 0.056 0.944 50 H 0.075 0.925 51 H 0.099 0.901 52 H 0.065 0.935 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.494 -16.022 -14.871 22.001 hybrid contribution -1.292 1.528 -0.236 2.015 sum 1.201 -14.494 -15.106 20.969 Atomic orbital electron populations 1.25684 0.96887 0.99724 0.99093 1.23304 0.95152 1.01465 1.01623 1.19167 0.84308 1.00529 0.92392 1.62030 1.04815 1.20277 1.40540 1.22125 0.86526 1.01410 0.96414 1.21332 0.99456 0.94044 0.98103 1.21413 0.97364 0.98736 0.94597 1.21144 0.80247 0.80386 0.88006 1.90649 1.35400 1.62918 1.57127 1.46281 1.45050 1.21985 1.23353 1.20953 0.98304 0.92508 0.82592 1.22341 0.98858 0.98140 0.96782 1.21735 0.94143 0.85832 0.94961 0.91734 1.22547 0.95669 0.97557 1.00209 1.22698 0.97898 0.97069 0.99645 1.21419 0.86257 0.97871 0.87713 0.90568 1.22095 1.00836 0.92556 0.99087 1.45363 1.29250 1.06030 1.51794 1.19252 1.06771 1.02390 1.07766 0.91174 1.25453 1.01500 1.00337 0.97429 1.70023 1.47428 1.21432 1.18979 0.85235 0.78781 0.78769 0.77519 1.21869 1.22224 1.20011 1.21526 0.92931 1.01005 0.98551 1.22059 0.98720 0.89521 0.96330 0.74294 0.91058 0.87285 0.92964 0.88618 0.90632 0.92486 0.86757 0.75938 0.90276 0.93019 0.94165 0.91882 0.90940 0.92688 0.90906 0.93382 0.92604 0.94411 0.92478 0.90150 0.93456 0.90550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.89 19.01 74.32 1.41 -1.48 16 2 C -0.22 -3.58 11.51 31.13 0.36 -3.23 16 3 C 0.16 2.20 5.77 84.50 0.49 2.69 16 4 N -0.55 -9.20 4.79 -907.46 -4.35 -13.55 16 5 C 0.06 0.89 5.42 86.32 0.47 1.36 16 6 C -0.09 -1.80 4.68 30.64 0.14 -1.66 16 7 C -0.10 -2.06 2.59 -11.46 -0.03 -2.09 16 8 C 0.51 14.94 7.12 87.66 0.62 15.56 16 9 O -0.58 -21.15 15.64 -3.03 -0.05 -21.20 16 10 N -0.72 -21.28 4.98 -442.07 -2.20 -23.49 16 11 C 0.16 5.73 2.10 45.09 0.09 5.82 16 12 C -0.12 -4.67 5.19 30.88 0.16 -4.51 16 13 C 0.14 5.82 4.32 45.43 0.20 6.01 16 14 H 0.06 2.65 8.14 -2.38 -0.02 2.63 16 15 C -0.12 -4.34 5.98 31.59 0.19 -4.16 16 16 C -0.13 -5.01 5.98 31.58 0.19 -4.82 16 17 C 0.17 7.88 3.15 45.40 0.14 8.02 16 18 H 0.08 4.01 6.33 -2.39 -0.02 3.99 16 19 C -0.11 -4.25 5.00 30.86 0.15 -4.09 16 20 N -0.60 -29.45 2.82 -637.27 -1.80 -31.25 16 21 C -0.23 -12.61 10.38 84.03 0.87 -11.74 16 22 H 0.07 3.75 7.85 -2.91 -0.02 3.73 16 23 C -0.05 -2.86 5.42 84.86 0.46 -2.40 16 24 N -0.93 -52.07 10.59 21.65 0.23 -51.84 16 25 Si 0.97 44.64 29.56 68.60 2.03 46.66 16 26 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 27 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 28 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 29 C -0.10 -2.02 5.26 30.65 0.16 -1.86 16 30 C 0.06 1.06 5.08 86.33 0.44 1.49 16 31 H 0.24 1.94 7.80 -4.41 -0.03 1.91 16 32 H 0.07 0.76 8.08 -2.39 -0.02 0.74 16 33 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.10 1.10 8.12 -2.38 -0.02 1.08 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.06 1.41 8.04 -2.39 -0.02 1.39 16 38 H 0.11 1.87 8.14 -2.38 -0.02 1.85 16 39 H 0.41 10.53 8.09 -92.71 -0.75 9.78 16 40 H 0.08 2.92 4.96 -2.39 -0.01 2.91 16 41 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.07 2.43 7.04 -2.39 -0.02 2.41 16 45 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.07 2.43 7.04 -2.38 -0.02 2.41 16 47 H 0.05 2.22 7.99 -2.39 -0.02 2.20 16 48 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 49 H 0.25 13.54 8.31 -92.71 -0.77 12.77 16 50 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 51 H 0.08 1.48 7.67 -2.39 -0.02 1.46 16 52 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 53 H 0.08 1.42 6.36 -2.39 -0.02 1.40 16 Total: -1.00 -65.75 405.04 0.52 -65.23 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: 0.14 Total: 30.49 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: 6.52 Total: -1.06 kcal Atomic # 7 Polarization: -112.01 SS G_CDS: -8.12 Total: -120.13 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.05 Total: -21.20 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -65.75 0.52 -65.23 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021470079.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.079 kcal (2) G-P(sol) polarization free energy of solvation -65.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds