Wall clock time and date at job start Wed Apr 1 2020 03:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46906 * 2 1 4 4 C 1.53001 * 109.47021 * 119.99846 * 2 1 3 5 5 C 1.50701 * 109.46919 * 65.00041 * 4 2 1 6 6 C 1.35448 * 126.06824 * 89.97657 * 5 4 2 7 7 N 1.35534 * 108.87640 * 180.25942 * 6 5 4 8 8 H 0.96997 * 125.68190 * 179.74646 * 7 6 5 9 9 C 1.37653 * 108.63935 * 359.63192 * 7 6 5 10 10 C 1.46675 * 126.23440 * 180.13698 * 9 7 6 11 11 O 1.21699 * 120.00211 * 188.36077 * 10 9 7 12 12 N 1.34774 * 120.00150 * 8.36602 * 10 9 7 13 13 C 1.48344 * 128.19627 * 6.18528 * 12 10 9 14 14 C 1.54826 * 104.12754 * 138.24070 * 13 12 10 15 15 H 1.09001 * 112.86135 * 263.44068 * 14 13 12 16 16 C 1.54150 * 108.66676 * 138.72195 * 14 13 12 17 17 C 1.54833 * 104.34688 * 224.14370 * 16 14 13 18 18 C 1.54833 * 102.73406 * 38.22870 * 17 16 14 19 19 H 1.08992 * 110.56522 * 80.54124 * 18 17 16 20 20 N 1.46505 * 110.45577 * 203.05762 * 18 17 16 21 21 C 1.36932 * 119.99547 * 269.92041 * 20 18 17 22 22 H 1.08004 * 120.00349 * 0.02562 * 21 20 18 23 23 C 1.38813 * 119.99884 * 180.02562 * 21 20 18 24 24 N 1.31623 * 120.00052 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00288 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47320 * 59.99716 * 25 23 21 27 27 H 1.48493 * 109.47490 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.46928 * 299.99815 * 25 23 21 29 29 C 1.54144 * 104.34452 * 321.77049 * 18 17 16 30 30 H 1.09000 * 111.89694 * 260.14525 * 29 18 17 31 31 C 1.48343 * 128.20119 * 186.51440 * 12 10 9 32 32 C 1.37877 * 107.53525 * 0.36327 * 9 7 6 33 33 H 1.09001 * 109.47304 * 59.99934 * 1 2 3 34 34 H 1.09000 * 109.47367 * 179.97438 * 1 2 3 35 35 H 1.08998 * 109.47055 * 300.00062 * 1 2 3 36 36 H 1.08998 * 109.47055 * 239.99938 * 2 1 3 37 37 H 1.09006 * 109.46786 * 179.97438 * 3 2 1 38 38 H 1.08996 * 109.46996 * 299.99432 * 3 2 1 39 39 H 1.08998 * 109.47314 * 60.00096 * 3 2 1 40 40 H 1.08994 * 109.47055 * 305.00085 * 4 2 1 41 41 H 1.08999 * 109.47139 * 185.00028 * 4 2 1 42 42 H 1.07999 * 125.56647 * 359.97438 * 6 5 4 43 43 H 1.09000 * 110.46784 * 256.98057 * 13 12 10 44 44 H 1.09001 * 110.46314 * 19.56744 * 13 12 10 45 45 H 1.09008 * 110.45579 * 105.42846 * 16 14 13 46 46 H 1.09001 * 110.45742 * 342.86395 * 16 14 13 47 47 H 1.09000 * 110.75896 * 279.91736 * 17 16 14 48 48 H 1.09000 * 110.75917 * 156.54215 * 17 16 14 49 49 H 0.96995 * 119.99962 * 89.92469 * 20 18 17 50 50 H 0.96997 * 120.00153 * 180.02562 * 24 23 21 51 51 H 1.08997 * 110.46359 * 340.43356 * 31 12 10 52 52 H 1.08994 * 110.46539 * 102.89395 * 31 12 10 53 53 H 1.07994 * 126.46027 * 179.75479 * 32 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 -2.1733 1.1889 6 6 2.3656 -3.1769 0.6388 7 7 1.6782 -4.3375 0.7714 8 1 1.9717 -5.2077 0.4591 9 6 0.4955 -4.0760 1.4253 10 6 -0.5385 -5.0567 1.7722 11 8 -1.6085 -4.6822 2.2149 12 7 -0.3038 -6.3728 1.6009 13 6 0.9619 -7.0341 1.1993 14 6 1.0449 -8.2793 2.1156 15 1 1.6625 -8.1149 2.9986 16 6 1.5438 -9.4746 1.2797 17 6 0.6242 -10.6472 1.7001 18 6 -0.7542 -9.9600 1.8585 19 1 -1.2310 -9.8298 0.8871 20 7 -1.6159 -10.7404 2.7502 21 6 -2.4306 -11.7135 2.2361 22 1 -2.4376 -11.9061 1.1734 23 6 -3.2474 -12.4525 3.0808 24 7 -3.2384 -12.2182 4.3759 25 14 -4.3583 -13.7806 2.3796 26 1 -3.5319 -14.8054 1.6926 27 1 -5.1228 -14.4189 3.4810 28 1 -5.3029 -13.1736 1.4078 29 6 -0.4283 -8.5906 2.4867 30 1 -0.6033 -8.5849 3.5625 31 6 -1.2515 -7.5024 1.7627 32 6 0.4575 -2.7235 1.6902 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 -0.3633 0.5138 0.8900 36 1 1.8933 -0.5138 -0.8900 37 1 3.1300 1.4425 0.0005 38 1 1.6767 1.9563 -0.8900 39 1 1.6766 1.9564 0.8900 40 1 1.6053 -0.2617 2.1369 41 1 3.1263 -0.6443 1.2952 42 1 3.3311 -3.0693 0.1670 43 1 0.9208 -7.3315 0.1515 44 1 1.8102 -6.3726 1.3757 45 1 2.5828 -9.7003 1.5199 46 1 1.4343 -9.2672 0.2152 47 1 0.9532 -11.0760 2.6467 48 1 0.5889 -11.4089 0.9212 49 1 -1.6093 -10.5676 3.7046 50 1 -3.8089 -12.7349 4.9662 51 1 -2.1036 -7.2007 2.3718 52 1 -1.5875 -7.8604 0.7895 53 1 -0.3370 -2.1895 2.1902 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026402929.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:05 Heat of formation + Delta-G solvation = -2.718794 kcal Electronic energy + Delta-G solvation = -30312.476992 eV Core-core repulsion = 26376.656890 eV Total energy + Delta-G solvation = -3935.820103 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.49359 -41.13159 -39.45249 -37.23090 -36.72175 -35.05091 -32.75823 -32.50831 -31.27052 -30.26644 -29.69263 -27.90262 -27.33805 -26.51816 -25.44142 -24.64470 -22.72959 -21.74312 -21.27407 -20.96562 -20.43839 -19.98735 -19.13296 -18.45777 -17.69133 -17.09312 -16.70588 -16.41790 -15.97782 -15.80132 -15.68369 -15.26448 -15.16610 -14.82424 -14.74206 -14.51549 -14.37138 -14.10732 -13.87197 -13.73338 -13.55596 -13.29012 -13.05586 -13.02425 -12.92627 -12.77366 -12.59293 -12.43169 -12.31805 -12.14669 -12.06481 -11.76090 -11.70647 -11.62137 -11.58394 -11.49425 -11.43504 -11.39495 -11.18688 -10.86396 -10.01861 -9.69842 -9.05757 -8.97785 -7.94164 -5.22076 0.43664 1.45923 1.48764 1.54620 1.73019 1.76264 2.20711 2.30762 2.55942 3.29316 3.36418 3.43391 3.70753 3.75973 4.00707 4.04007 4.09288 4.10535 4.23390 4.23918 4.33570 4.37973 4.39976 4.44166 4.52813 4.54059 4.61198 4.62722 4.74010 4.81760 4.83710 4.87359 4.92602 4.97227 5.02998 5.06781 5.09191 5.14171 5.18355 5.20389 5.24565 5.33231 5.38492 5.39177 5.45811 5.50236 5.54257 5.61245 5.61981 5.85119 5.97184 6.27920 6.41447 6.55905 6.96996 7.33469 8.11379 8.32437 9.29272 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.024318 B = 0.001990 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.157590 B =14070.177050 C =14768.042733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 C -0.145 4.145 4 C -0.038 4.038 5 C -0.185 4.185 6 C 0.047 3.953 7 N -0.529 5.529 8 H 0.429 0.571 9 C -0.074 4.074 10 C 0.599 3.401 11 O -0.587 6.587 12 N -0.625 5.625 13 C 0.098 3.902 14 C -0.089 4.089 15 H 0.096 0.904 16 C -0.100 4.100 17 C -0.139 4.139 18 C 0.175 3.825 19 H 0.056 0.944 20 N -0.736 5.736 21 C -0.236 4.236 22 H 0.078 0.922 23 C -0.079 4.079 24 N -0.972 5.972 25 Si 0.970 3.030 26 H -0.276 1.276 27 H -0.299 1.299 28 H -0.280 1.280 29 C -0.103 4.103 30 H 0.063 0.937 31 C 0.118 3.882 32 C -0.112 4.112 33 H 0.051 0.949 34 H 0.041 0.959 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.061 0.939 41 H 0.088 0.912 42 H 0.213 0.787 43 H 0.108 0.892 44 H 0.098 0.902 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.046 0.954 48 H 0.057 0.943 49 H 0.370 0.630 50 H 0.249 0.751 51 H 0.049 0.951 52 H 0.084 0.916 53 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.025 22.735 -12.895 33.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.106 4.106 3 C -0.203 4.203 4 C -0.076 4.076 5 C -0.190 4.190 6 C -0.089 4.089 7 N -0.131 5.131 8 H 0.274 0.726 9 C -0.186 4.186 10 C 0.391 3.609 11 O -0.468 6.468 12 N -0.357 5.357 13 C -0.024 4.024 14 C -0.109 4.109 15 H 0.114 0.886 16 C -0.138 4.138 17 C -0.179 4.179 18 C 0.066 3.934 19 H 0.074 0.926 20 N -0.374 5.374 21 C -0.368 4.368 22 H 0.096 0.904 23 C -0.271 4.271 24 N -0.622 5.622 25 Si 0.800 3.200 26 H -0.202 1.202 27 H -0.225 1.225 28 H -0.206 1.206 29 C -0.124 4.124 30 H 0.081 0.919 31 C -0.004 4.004 32 C -0.140 4.140 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.107 0.893 42 H 0.230 0.770 43 H 0.126 0.874 44 H 0.116 0.884 45 H 0.106 0.894 46 H 0.109 0.891 47 H 0.065 0.935 48 H 0.076 0.924 49 H 0.202 0.798 50 H 0.058 0.942 51 H 0.067 0.933 52 H 0.102 0.898 53 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 20.346 22.732 -12.841 33.100 hybrid contribution -1.584 -1.431 0.688 2.243 sum 18.763 21.301 -12.153 30.878 Atomic orbital electron populations 1.21872 0.96530 1.01040 1.01183 1.21073 0.94945 0.96320 0.98218 1.21834 1.01487 0.95270 1.01685 1.20048 1.01399 0.88459 0.97678 1.19610 0.95477 0.96867 1.07081 1.22539 0.99662 0.83563 1.03184 1.42585 1.14617 1.11299 1.44553 0.72551 1.19897 0.91078 0.94740 1.12916 1.17186 0.86122 0.80424 0.77157 1.90816 1.27700 1.79696 1.48561 1.49155 1.14506 1.04314 1.67760 1.23257 0.85257 0.93641 1.00195 1.22745 0.94340 0.94954 0.98845 0.88570 1.22374 0.99401 0.92149 0.99892 1.23046 0.96367 0.98168 1.00315 1.21431 0.90526 0.88665 0.92775 0.92579 1.42665 1.47709 1.40993 1.06078 1.19604 1.14682 1.09723 0.92824 0.90417 1.25551 1.02670 1.03060 0.95817 1.69817 1.44162 1.44987 1.03282 0.85252 0.78777 0.79332 0.76669 1.20152 1.22549 1.20617 1.22897 0.95946 0.94393 0.99134 0.91871 1.22476 0.92475 0.85054 1.00425 1.21258 0.99162 0.91222 1.02312 0.92975 0.93950 0.93263 0.90971 0.91565 0.92764 0.92945 0.92064 0.89316 0.76995 0.87382 0.88417 0.89360 0.89105 0.93521 0.92415 0.79842 0.94228 0.93271 0.89823 0.85663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 8.92 71.98 0.64 -1.68 16 2 C -0.09 -1.00 2.91 -10.79 -0.03 -1.03 16 3 C -0.15 -1.31 9.19 71.98 0.66 -0.65 16 4 C -0.04 -0.45 5.18 29.85 0.15 -0.29 16 5 C -0.18 -2.92 4.78 -20.12 -0.10 -3.02 16 6 C 0.05 0.52 11.80 83.48 0.99 1.50 16 7 N -0.53 -7.43 5.38 -183.62 -0.99 -8.41 16 8 H 0.43 3.67 5.53 -92.71 -0.51 3.16 16 9 C -0.07 -1.77 6.86 40.35 0.28 -1.49 16 10 C 0.60 18.95 7.88 86.45 0.68 19.63 16 11 O -0.59 -24.35 17.17 -4.35 -0.07 -24.43 16 12 N -0.63 -16.85 3.31 -810.60 -2.68 -19.54 16 13 C 0.10 1.62 5.48 86.65 0.47 2.10 16 14 C -0.09 -1.86 3.97 -9.07 -0.04 -1.90 16 15 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 16 C -0.10 -1.87 6.36 31.61 0.20 -1.67 16 17 C -0.14 -4.20 6.57 31.85 0.21 -3.99 16 18 C 0.17 6.41 3.06 46.00 0.14 6.55 16 19 H 0.06 2.06 7.13 -2.39 -0.02 2.05 16 20 N -0.74 -36.56 5.20 -318.15 -1.65 -38.22 16 21 C -0.24 -12.99 9.96 84.03 0.84 -12.15 16 22 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 23 C -0.08 -4.56 5.50 84.86 0.47 -4.10 16 24 N -0.97 -60.39 13.06 21.65 0.28 -60.11 16 25 Si 0.97 46.50 29.55 68.60 2.03 48.52 16 26 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 27 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 28 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 29 C -0.10 -3.25 3.65 -9.19 -0.03 -3.29 16 30 H 0.06 2.35 7.79 -2.39 -0.02 2.33 16 31 C 0.12 3.80 6.60 86.52 0.57 4.37 16 32 C -0.11 -2.63 9.27 22.57 0.21 -2.42 16 33 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.04 0.83 6.42 -2.39 -0.02 0.81 16 35 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16 38 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.21 0.42 8.06 -2.91 -0.02 0.39 16 43 H 0.11 1.27 7.21 -2.39 -0.02 1.25 16 44 H 0.10 1.07 5.15 -2.39 -0.01 1.06 16 45 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 46 H 0.09 1.29 7.18 -2.39 -0.02 1.27 16 47 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 49 H 0.37 20.23 7.60 -92.71 -0.70 19.52 16 50 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 51 H 0.05 1.92 7.84 -2.39 -0.02 1.90 16 52 H 0.08 2.55 7.20 -2.39 -0.02 2.53 16 53 H 0.13 3.31 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -77.12 411.92 2.92 -74.20 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: -0.30 Total: 31.50 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: 6.31 Total: -3.52 kcal Atomic # 7 Polarization: -121.23 SS G_CDS: -5.04 Total: -126.27 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.07 Total: -24.43 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Total: -77.12 2.92 -74.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026402929.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.482 kcal (2) G-P(sol) polarization free energy of solvation -77.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds