Wall clock time and date at job start Wed Apr 1 2020 03:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47108 * 2 1 4 4 C 1.52998 * 109.47087 * 120.00495 * 2 1 3 5 5 C 1.50693 * 109.47570 * 64.99348 * 4 2 1 6 6 C 1.35457 * 126.06679 * 89.97317 * 5 4 2 7 7 N 1.35534 * 108.87565 * 180.02562 * 6 5 4 8 8 H 0.97000 * 125.67818 * 179.97438 * 7 6 5 9 9 C 1.37651 * 108.64199 * 0.02562 * 7 6 5 10 10 C 1.46673 * 126.23576 * 179.97438 * 9 7 6 11 11 O 1.21689 * 120.00261 * 188.01636 * 10 9 7 12 12 N 1.34778 * 119.99832 * 8.01972 * 10 9 7 13 13 C 1.49631 * 126.06975 * 358.02478 * 12 10 9 14 14 C 1.51524 * 102.49260 * 154.37212 * 13 12 10 15 15 H 1.08998 * 111.12500 * 288.14025 * 14 13 12 16 16 C 1.51558 * 123.79904 * 151.79651 * 14 13 12 17 17 C 1.55467 * 102.21980 * 208.28774 * 16 14 13 18 18 C 1.56004 * 105.84152 * 24.94237 * 17 16 14 19 19 H 1.09001 * 110.64578 * 125.97716 * 18 17 16 20 20 N 1.46505 * 110.52422 * 248.66688 * 18 17 16 21 21 C 1.36939 * 119.99909 * 269.56932 * 20 18 17 22 22 H 1.07997 * 119.99890 * 359.97438 * 21 20 18 23 23 C 1.38814 * 119.99828 * 180.27311 * 21 20 18 24 24 N 1.31619 * 119.99846 * 359.72429 * 23 21 20 25 25 Si 1.86791 * 119.99861 * 179.72313 * 23 21 20 26 26 H 1.48500 * 109.47194 * 90.00007 * 25 23 21 27 27 H 1.48496 * 109.47318 * 210.00391 * 25 23 21 28 28 H 1.48508 * 109.47246 * 330.00229 * 25 23 21 29 29 C 1.49700 * 103.99005 * 7.29157 * 18 17 16 30 30 H 1.08997 * 108.55001 * 77.97674 * 29 18 17 31 31 C 1.49285 * 126.07581 * 178.04564 * 12 10 9 32 32 C 1.37879 * 107.53215 * 0.26216 * 9 7 6 33 33 H 1.08998 * 109.47705 * 59.99553 * 1 2 3 34 34 H 1.09005 * 109.47366 * 180.02562 * 1 2 3 35 35 H 1.09002 * 109.46849 * 299.99873 * 1 2 3 36 36 H 1.09002 * 109.46849 * 240.00127 * 2 1 3 37 37 H 1.09000 * 109.47066 * 180.02562 * 3 2 1 38 38 H 1.09001 * 109.47367 * 300.00003 * 3 2 1 39 39 H 1.08997 * 109.47550 * 60.00121 * 3 2 1 40 40 H 1.09004 * 109.46882 * 304.99515 * 4 2 1 41 41 H 1.09001 * 109.47095 * 184.99875 * 4 2 1 42 42 H 1.08001 * 125.55896 * 0.02675 * 6 5 4 43 43 H 1.08996 * 110.80446 * 36.11937 * 13 12 10 44 44 H 1.08999 * 110.80114 * 272.62096 * 13 12 10 45 45 H 1.09002 * 110.96134 * 325.94364 * 16 14 13 46 46 H 1.09000 * 110.96311 * 89.65130 * 16 14 13 47 47 H 1.08995 * 109.87286 * 265.99117 * 17 16 14 48 48 H 1.08999 * 110.42940 * 144.18861 * 17 16 14 49 49 H 0.97002 * 119.99820 * 89.56574 * 20 18 17 50 50 H 0.96996 * 119.99502 * 179.97438 * 24 23 21 51 51 H 1.09001 * 110.39208 * 54.79314 * 31 12 10 52 52 H 1.08996 * 110.39690 * 292.39403 * 31 12 10 53 53 H 1.08005 * 126.45241 * 179.73267 * 32 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6412 -2.1733 1.1889 6 6 2.3655 -3.1770 0.6386 7 7 1.6805 -4.3384 0.7759 8 1 1.9758 -5.2093 0.4674 9 6 0.4954 -4.0761 1.4251 10 6 -0.5388 -5.0567 1.7718 11 8 -1.6081 -4.6822 2.2157 12 7 -0.3047 -6.3727 1.5989 13 6 0.9385 -6.9787 1.0276 14 6 0.9442 -8.3611 1.6481 15 1 1.1854 -8.3140 2.7100 16 6 1.5775 -9.5746 0.9974 17 6 0.7234 -10.7395 1.5723 18 6 -0.6543 -10.1119 1.9489 19 1 -1.4686 -10.6588 1.4735 20 7 -0.8300 -10.0933 3.4032 21 6 -1.4219 -11.1544 4.0350 22 1 -1.7597 -12.0046 3.4610 23 6 -1.5935 -11.1343 5.4123 24 7 -1.1823 -10.0979 6.1117 25 14 -2.4080 -12.5782 6.2731 26 1 -1.3731 -13.5682 6.6659 27 1 -3.1170 -12.0959 7.4854 28 1 -3.3813 -13.2186 5.3523 29 6 -0.5753 -8.7167 1.4119 30 1 -0.7429 -8.7495 0.3354 31 6 -1.2396 -7.4845 1.9428 32 6 0.4546 -2.7225 1.6843 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3634 -1.0277 0.0005 35 1 -0.3633 0.5138 0.8900 36 1 1.8933 -0.5138 -0.8900 37 1 3.1300 1.4424 -0.0005 38 1 1.6767 1.9563 -0.8900 39 1 1.6767 1.9563 0.8899 40 1 1.6054 -0.2618 2.1369 41 1 3.1263 -0.6445 1.2951 42 1 3.3313 -3.0694 0.1674 43 1 1.8196 -6.4140 1.3321 44 1 0.8743 -7.0422 -0.0586 45 1 1.4789 -9.5315 -0.0873 46 1 2.6234 -9.6718 1.2884 47 1 1.2053 -11.1493 2.4599 48 1 0.5893 -11.5190 0.8223 49 1 -0.5269 -9.3295 3.9186 50 1 -1.3026 -10.0838 7.0740 51 1 -2.2039 -7.3338 1.4574 52 1 -1.3642 -7.5556 3.0232 53 1 -0.3425 -2.1877 2.1795 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026402930.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:09 Heat of formation + Delta-G solvation = 13.565404 kcal Electronic energy + Delta-G solvation = -30650.455145 eV Core-core repulsion = 26715.341178 eV Total energy + Delta-G solvation = -3935.113967 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.55882 -41.47229 -39.58757 -37.24149 -36.76926 -35.11256 -32.68042 -32.52141 -31.33808 -30.26543 -29.83023 -27.89752 -27.47929 -26.67295 -25.23802 -24.97317 -22.64833 -21.66518 -21.15245 -20.99870 -20.34169 -19.94276 -19.37375 -18.62634 -17.50287 -17.03649 -16.75464 -16.35801 -15.97250 -15.76941 -15.63273 -15.50887 -15.28491 -14.92427 -14.74568 -14.59763 -14.39544 -14.08732 -13.90812 -13.69452 -13.57523 -13.33955 -13.11345 -13.03344 -12.90464 -12.78626 -12.66056 -12.40917 -12.31187 -12.26684 -12.09134 -11.93336 -11.75251 -11.60557 -11.55021 -11.39754 -11.39651 -11.24548 -10.97830 -10.91715 -9.99042 -9.68504 -9.05624 -8.99310 -7.94443 -5.22039 0.44758 1.45011 1.46655 1.54799 1.63868 1.76780 2.22399 2.31000 2.55434 2.90381 3.39573 3.46199 3.68677 3.84467 4.00590 4.04406 4.09177 4.11740 4.16588 4.23039 4.24090 4.33594 4.42298 4.44141 4.52618 4.54374 4.60646 4.66015 4.80690 4.81661 4.86535 4.87272 4.92635 4.94252 5.01904 5.07618 5.10650 5.14134 5.18504 5.20329 5.20985 5.32995 5.34621 5.38859 5.42662 5.51916 5.54690 5.61684 5.66829 5.84744 5.96731 6.27632 6.34414 6.55389 6.96903 7.33468 8.11537 8.32371 9.28987 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.019144 B = 0.002217 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.246459 B =12628.100362 C =13390.133067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.086 4.086 3 C -0.145 4.145 4 C -0.038 4.038 5 C -0.184 4.184 6 C 0.046 3.954 7 N -0.530 5.530 8 H 0.429 0.571 9 C -0.074 4.074 10 C 0.592 3.408 11 O -0.587 6.587 12 N -0.623 5.623 13 C 0.110 3.890 14 C -0.111 4.111 15 H 0.057 0.943 16 C -0.081 4.081 17 C -0.139 4.139 18 C 0.183 3.817 19 H 0.053 0.947 20 N -0.731 5.731 21 C -0.233 4.233 22 H 0.079 0.921 23 C -0.081 4.081 24 N -0.972 5.972 25 Si 0.970 3.030 26 H -0.287 1.287 27 H -0.302 1.302 28 H -0.269 1.269 29 C -0.120 4.120 30 H 0.103 0.897 31 C 0.136 3.864 32 C -0.113 4.113 33 H 0.053 0.947 34 H 0.041 0.959 35 H 0.047 0.953 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.051 0.949 40 H 0.059 0.941 41 H 0.088 0.912 42 H 0.214 0.786 43 H 0.093 0.907 44 H 0.115 0.885 45 H 0.101 0.899 46 H 0.078 0.922 47 H 0.043 0.957 48 H 0.077 0.923 49 H 0.370 0.630 50 H 0.248 0.752 51 H 0.063 0.937 52 H 0.037 0.963 53 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.362 16.072 -20.263 29.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.105 4.105 3 C -0.203 4.203 4 C -0.076 4.076 5 C -0.190 4.190 6 C -0.091 4.091 7 N -0.132 5.132 8 H 0.275 0.725 9 C -0.187 4.187 10 C 0.384 3.616 11 O -0.468 6.468 12 N -0.357 5.357 13 C -0.010 4.010 14 C -0.130 4.130 15 H 0.075 0.925 16 C -0.119 4.119 17 C -0.179 4.179 18 C 0.074 3.926 19 H 0.072 0.928 20 N -0.370 5.370 21 C -0.365 4.365 22 H 0.097 0.903 23 C -0.273 4.273 24 N -0.623 5.623 25 Si 0.800 3.200 26 H -0.214 1.214 27 H -0.229 1.229 28 H -0.193 1.193 29 C -0.140 4.140 30 H 0.122 0.878 31 C 0.015 3.985 32 C -0.141 4.141 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.107 0.893 42 H 0.231 0.769 43 H 0.111 0.889 44 H 0.133 0.867 45 H 0.119 0.881 46 H 0.097 0.903 47 H 0.062 0.938 48 H 0.096 0.904 49 H 0.202 0.798 50 H 0.056 0.944 51 H 0.082 0.918 52 H 0.055 0.945 53 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 13.685 15.965 -20.068 29.067 hybrid contribution -1.048 -0.971 1.629 2.167 sum 12.637 14.993 -18.439 26.917 Atomic orbital electron populations 1.21874 0.96499 1.01061 1.01192 1.21066 0.94977 0.96310 0.98126 1.21831 1.01476 0.95243 1.01704 1.20054 1.01377 0.88419 0.97766 1.19616 0.95379 0.96951 1.07071 1.22554 0.99728 0.83547 1.03258 1.42689 1.14565 1.11323 1.44632 0.72476 1.19912 0.90888 0.94739 1.13133 1.17268 0.86152 0.80713 0.77489 1.90804 1.27253 1.79793 1.48941 1.49791 1.19033 1.04363 1.62501 1.22226 0.85803 0.93200 0.99790 1.22511 0.96059 0.94186 1.00264 0.92475 1.21628 0.98725 0.90665 1.00841 1.23504 0.95897 0.98463 1.00080 1.20388 0.96069 0.92608 0.83575 0.92846 1.42614 1.71463 1.20447 1.02501 1.19661 1.29127 0.97301 0.90376 0.90310 1.25545 1.03737 1.00436 0.97548 1.69831 1.54717 1.31938 1.05863 0.85182 0.78111 0.78939 0.77807 1.21401 1.22910 1.19336 1.21926 0.96709 0.93454 1.01914 0.87838 1.20744 0.92555 0.85899 0.99347 1.21254 0.99231 0.91188 1.02407 0.92806 0.93945 0.93370 0.90850 0.91589 0.92633 0.93011 0.92186 0.89349 0.76899 0.88946 0.86706 0.88071 0.90340 0.93797 0.90390 0.79778 0.94366 0.91846 0.94483 0.85724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 8.91 71.98 0.64 -1.85 16 2 C -0.09 -1.11 2.91 -10.80 -0.03 -1.14 16 3 C -0.15 -1.47 9.19 71.98 0.66 -0.81 16 4 C -0.04 -0.53 5.18 29.85 0.15 -0.37 16 5 C -0.18 -3.36 4.79 -20.12 -0.10 -3.46 16 6 C 0.05 0.61 11.80 83.48 0.99 1.60 16 7 N -0.53 -8.92 5.41 -183.62 -0.99 -9.92 16 8 H 0.43 4.86 5.21 -92.71 -0.48 4.38 16 9 C -0.07 -2.01 6.87 40.35 0.28 -1.73 16 10 C 0.59 20.80 7.84 86.45 0.68 21.47 16 11 O -0.59 -26.28 17.26 -4.31 -0.07 -26.35 16 12 N -0.62 -19.09 3.43 -819.81 -2.81 -21.90 16 13 C 0.11 2.16 5.27 85.29 0.45 2.61 16 14 C -0.11 -2.76 3.07 -10.03 -0.03 -2.79 16 15 H 0.06 1.89 7.88 -2.39 -0.02 1.87 16 16 C -0.08 -1.61 6.58 30.97 0.20 -1.41 16 17 C -0.14 -4.04 6.71 32.48 0.22 -3.82 16 18 C 0.18 6.60 3.47 44.97 0.16 6.75 16 19 H 0.05 1.96 8.09 -2.39 -0.02 1.94 16 20 N -0.73 -35.82 4.85 -323.01 -1.57 -37.38 16 21 C -0.23 -12.76 9.96 84.03 0.84 -11.92 16 22 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 23 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 24 N -0.97 -61.09 13.06 21.65 0.28 -60.80 16 25 Si 0.97 46.94 29.55 68.60 2.03 48.97 16 26 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 27 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 28 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 29 C -0.12 -3.58 2.26 -11.19 -0.03 -3.60 16 30 H 0.10 2.43 8.00 -2.39 -0.02 2.41 16 31 C 0.14 4.90 6.67 84.78 0.57 5.47 16 32 C -0.11 -2.98 9.24 22.57 0.21 -2.77 16 33 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.04 0.88 6.40 -2.38 -0.02 0.86 16 35 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 36 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 37 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.21 0.86 8.06 -2.91 -0.02 0.84 16 43 H 0.09 1.43 5.55 -2.39 -0.01 1.42 16 44 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.04 1.57 7.98 -2.39 -0.02 1.55 16 48 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 49 H 0.37 20.13 6.72 -92.71 -0.62 19.50 16 50 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 51 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 52 H 0.04 1.68 7.22 -2.39 -0.02 1.66 16 53 H 0.12 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -78.32 412.25 2.98 -75.34 By element: Atomic # 1 Polarization: 34.24 SS G_CDS: -0.20 Total: 34.04 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: 6.32 Total: -1.99 kcal Atomic # 7 Polarization: -124.91 SS G_CDS: -5.09 Total: -130.00 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.07 Total: -26.35 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -78.32 2.98 -75.34 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026402930.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.906 kcal (2) G-P(sol) polarization free energy of solvation -78.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds