Wall clock time and date at job start Wed Apr 1 2020 03:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46782 * 2 1 4 4 C 1.53001 * 109.47547 * 119.99900 * 2 1 3 5 5 C 1.50691 * 109.47481 * 175.00264 * 4 2 1 6 6 C 1.35455 * 126.06849 * 269.96150 * 5 4 2 7 7 N 1.35529 * 108.87436 * 180.02562 * 6 5 4 8 8 H 0.96998 * 125.68415 * 180.02562 * 7 6 5 9 9 C 1.37654 * 108.64410 * 359.97438 * 7 6 5 10 10 C 1.46683 * 126.23542 * 180.26304 * 9 7 6 11 11 O 1.21696 * 119.99755 * 187.89936 * 10 9 7 12 12 N 1.34776 * 119.99858 * 7.89238 * 10 9 7 13 13 C 1.48344 * 128.19236 * 6.25178 * 12 10 9 14 14 C 1.54915 * 104.07393 * 138.25803 * 13 12 10 15 15 H 1.09001 * 112.54984 * 263.89602 * 14 13 12 16 16 C 1.53559 * 108.94516 * 139.48343 * 14 13 12 17 17 C 1.53950 * 106.03307 * 229.12593 * 16 14 13 18 18 C 1.53963 * 104.88703 * 29.55932 * 17 16 14 19 19 H 1.08998 * 110.14213 * 211.29284 * 18 17 16 20 20 N 1.46502 * 110.19509 * 89.61221 * 18 17 16 21 21 C 1.36939 * 120.00214 * 138.94587 * 20 18 17 22 22 H 1.08008 * 119.99697 * 0.02562 * 21 20 18 23 23 C 1.38809 * 120.00312 * 179.97438 * 21 20 18 24 24 N 1.31626 * 119.99918 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00033 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47191 * 90.00288 * 25 23 21 27 27 H 1.48504 * 109.47098 * 210.00264 * 25 23 21 28 28 H 1.48495 * 109.47133 * 329.99948 * 25 23 21 29 29 C 1.53548 * 106.03368 * 330.44060 * 18 17 16 30 30 H 1.08997 * 111.66082 * 254.94145 * 29 18 17 31 31 C 1.48347 * 128.19333 * 186.56154 * 12 10 9 32 32 C 1.37877 * 107.53154 * 0.02562 * 9 7 6 33 33 H 1.09001 * 109.47438 * 299.99440 * 1 2 3 34 34 H 1.08992 * 109.47273 * 60.00106 * 1 2 3 35 35 H 1.09003 * 109.46392 * 179.97438 * 1 2 3 36 36 H 1.09001 * 109.47438 * 240.00560 * 2 1 3 37 37 H 1.09002 * 109.47417 * 60.00163 * 3 2 1 38 38 H 1.09001 * 109.46971 * 179.97438 * 3 2 1 39 39 H 1.09002 * 109.47300 * 299.99869 * 3 2 1 40 40 H 1.09001 * 109.46766 * 54.99946 * 4 2 1 41 41 H 1.09005 * 109.46851 * 295.00846 * 4 2 1 42 42 H 1.08004 * 125.56247 * 0.02562 * 6 5 4 43 43 H 1.09006 * 110.47188 * 256.99218 * 13 12 10 44 44 H 1.09005 * 110.47791 * 19.59269 * 13 12 10 45 45 H 1.09000 * 110.13569 * 109.98054 * 16 14 13 46 46 H 1.08997 * 110.13917 * 348.26737 * 16 14 13 47 47 H 1.09000 * 110.35614 * 270.70992 * 17 16 14 48 48 H 1.09000 * 110.35875 * 148.40915 * 17 16 14 49 49 H 0.97000 * 120.00006 * 318.95124 * 20 18 17 50 50 H 0.96992 * 119.99794 * 180.02562 * 24 23 21 51 51 H 1.09002 * 110.47251 * 340.41121 * 31 12 10 52 52 H 1.09005 * 110.46489 * 103.00764 * 31 12 10 53 53 H 1.07997 * 126.45390 * 179.97438 * 32 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5419 -0.8293 1.1889 6 6 4.2468 -1.8473 0.6398 7 7 5.5701 -1.5889 0.7777 8 1 6.2928 -2.1580 0.4700 9 6 5.7178 -0.3836 1.4261 10 6 6.9871 0.2667 1.7688 11 8 6.9913 1.2618 2.4694 12 7 8.1488 -0.2378 1.3078 13 6 8.3485 -1.3521 0.3492 14 6 9.4910 -0.8562 -0.5721 15 1 9.1199 -0.4048 -1.4922 16 6 10.4436 -2.0260 -0.8587 17 6 11.8627 -1.4955 -0.5854 18 6 11.6806 -0.4207 0.5018 19 1 12.4321 0.3604 0.3870 20 7 11.7815 -1.0252 1.8325 21 6 12.4614 -0.3773 2.8291 22 1 12.9228 0.5796 2.6343 23 6 12.5565 -0.9498 4.0901 24 7 11.9937 -2.1157 4.3277 25 14 13.4833 -0.0657 5.4498 26 1 12.5484 0.8165 6.1934 27 1 14.0678 -1.0642 6.3807 28 1 14.5704 0.7534 4.8562 29 6 10.2758 0.1620 0.2910 30 1 10.3148 1.1513 -0.1649 31 6 9.5302 0.1856 1.6439 32 6 4.4552 0.1035 1.6900 33 1 -0.3634 0.5137 0.8900 34 1 -0.3633 0.5138 -0.8899 35 1 -0.3632 -1.0277 -0.0005 36 1 1.8934 -0.5137 -0.8900 37 1 1.6766 1.9564 0.8900 38 1 3.1299 1.4426 0.0005 39 1 1.6766 1.9564 -0.8900 40 1 1.6055 -1.7198 1.2951 41 1 1.7516 -0.1583 2.1370 42 1 3.8234 -2.7223 0.1689 43 1 8.6466 -2.2590 0.8755 44 1 7.4403 -1.5262 -0.2278 45 1 10.3532 -2.3372 -1.8994 46 1 10.2214 -2.8621 -0.1957 47 1 12.2828 -1.0535 -1.4889 48 1 12.5041 -2.2982 -0.2214 49 1 11.3668 -1.8845 2.0076 50 1 12.0599 -2.5156 5.2089 51 1 9.5295 1.1925 2.0613 52 1 9.9850 -0.5172 2.3421 53 1 4.2167 1.0307 2.1898 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026402932.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:19 Heat of formation + Delta-G solvation = 7.216394 kcal Electronic energy + Delta-G solvation = -31127.673257 eV Core-core repulsion = 27192.283977 eV Total energy + Delta-G solvation = -3935.389281 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.48980 -41.16757 -39.44901 -37.23072 -36.56328 -35.13541 -32.75574 -32.46868 -31.18472 -30.08789 -29.76232 -27.89856 -27.33865 -26.54835 -25.50188 -25.03081 -22.65254 -21.57998 -21.08140 -20.93149 -20.05495 -19.92204 -19.42557 -18.46171 -17.57313 -17.07324 -16.64463 -16.35707 -16.24560 -15.73350 -15.67667 -15.30969 -15.10472 -15.04777 -14.69313 -14.45823 -14.18888 -14.07639 -14.01466 -13.71254 -13.58901 -13.23287 -13.08112 -13.03629 -12.89053 -12.77803 -12.38528 -12.31898 -12.25290 -12.20133 -11.97358 -11.76354 -11.60761 -11.57619 -11.44026 -11.42964 -11.39270 -11.38055 -11.09739 -10.96544 -9.93509 -9.70025 -9.08401 -8.88088 -7.96533 -5.21781 0.45216 1.43229 1.46437 1.51849 1.75580 1.85677 2.21123 2.32725 2.53924 3.35060 3.38126 3.48618 3.70805 3.85457 4.02259 4.08719 4.10188 4.18589 4.23592 4.31147 4.34268 4.40551 4.43380 4.51604 4.54989 4.58865 4.71653 4.73234 4.83087 4.83591 4.87931 4.92284 4.99422 5.03780 5.07667 5.11230 5.16081 5.18002 5.19838 5.22419 5.33250 5.38516 5.39810 5.45766 5.49092 5.54666 5.57756 5.61119 5.62536 5.84699 5.96936 6.26761 6.48350 6.56430 7.02494 7.34440 8.09512 8.31937 9.25745 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.015217 B = 0.002609 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.599602 B =10729.308118 C =11673.490591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.149 4.149 4 C -0.038 4.038 5 C -0.182 4.182 6 C 0.043 3.957 7 N -0.531 5.531 8 H 0.426 0.574 9 C -0.074 4.074 10 C 0.591 3.409 11 O -0.593 6.593 12 N -0.624 5.624 13 C 0.097 3.903 14 C -0.084 4.084 15 H 0.107 0.893 16 C -0.105 4.105 17 C -0.125 4.125 18 C 0.168 3.832 19 H 0.054 0.946 20 N -0.715 5.715 21 C -0.233 4.233 22 H 0.072 0.928 23 C -0.069 4.069 24 N -0.962 5.962 25 Si 0.957 3.043 26 H -0.299 1.299 27 H -0.296 1.296 28 H -0.269 1.269 29 C -0.117 4.117 30 H 0.079 0.921 31 C 0.107 3.893 32 C -0.113 4.113 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.048 0.952 38 H 0.041 0.959 39 H 0.054 0.946 40 H 0.088 0.912 41 H 0.060 0.940 42 H 0.214 0.786 43 H 0.080 0.920 44 H 0.097 0.903 45 H 0.096 0.904 46 H 0.062 0.938 47 H 0.085 0.915 48 H 0.057 0.943 49 H 0.376 0.624 50 H 0.249 0.751 51 H 0.031 0.969 52 H 0.098 0.902 53 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.276 -3.454 -17.481 26.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.104 4.104 3 C -0.206 4.206 4 C -0.076 4.076 5 C -0.187 4.187 6 C -0.093 4.093 7 N -0.133 5.133 8 H 0.271 0.729 9 C -0.186 4.186 10 C 0.384 3.616 11 O -0.475 6.475 12 N -0.355 5.355 13 C -0.025 4.025 14 C -0.103 4.103 15 H 0.125 0.875 16 C -0.143 4.143 17 C -0.164 4.164 18 C 0.058 3.942 19 H 0.073 0.927 20 N -0.354 5.354 21 C -0.365 4.365 22 H 0.090 0.910 23 C -0.261 4.261 24 N -0.613 5.613 25 Si 0.788 3.212 26 H -0.227 1.227 27 H -0.222 1.222 28 H -0.194 1.194 29 C -0.139 4.139 30 H 0.098 0.902 31 C -0.015 4.015 32 C -0.140 4.140 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.106 0.894 41 H 0.079 0.921 42 H 0.231 0.769 43 H 0.098 0.902 44 H 0.114 0.886 45 H 0.114 0.886 46 H 0.081 0.919 47 H 0.104 0.896 48 H 0.075 0.925 49 H 0.209 0.791 50 H 0.057 0.943 51 H 0.050 0.950 52 H 0.115 0.885 53 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -19.026 -2.858 -17.019 25.687 hybrid contribution 1.127 0.471 1.630 2.037 sum -17.899 -2.386 -15.389 23.725 Atomic orbital electron populations 1.21831 0.94346 1.02305 1.01745 1.21063 0.95793 0.95545 0.98047 1.21872 1.00592 0.96911 1.01240 1.20059 0.88060 1.01577 0.97871 1.19605 0.96378 0.95896 1.06863 1.22562 0.81417 1.01789 1.03549 1.42637 1.09149 1.16857 1.44622 0.72852 1.19996 0.93558 0.92407 1.12684 1.17251 0.82227 0.82971 0.79192 1.90775 1.87052 1.27946 1.41734 1.49236 1.05563 1.35595 1.45112 1.23185 0.99692 0.89398 0.90223 1.22614 0.94375 0.95878 0.97482 0.87459 1.22100 0.93201 0.96228 1.02731 1.22494 0.97574 0.98134 0.98173 1.20999 0.93426 0.94740 0.85046 0.92745 1.42569 1.62897 1.22891 1.07078 1.19560 1.24839 1.01517 0.90577 0.90982 1.25344 1.02976 0.98016 0.99797 1.69759 1.50974 1.18647 1.21930 0.85375 0.78494 0.77397 0.79967 1.22658 1.22231 1.19369 1.23122 0.97426 0.99489 0.93867 0.90241 1.22910 0.79196 1.00308 0.99131 1.21244 0.90230 1.00315 1.02245 0.92957 0.92572 0.91624 0.90891 0.93311 0.94015 0.92727 0.89380 0.92081 0.76948 0.90199 0.88562 0.88584 0.91945 0.89595 0.92461 0.79081 0.94252 0.94991 0.88455 0.85567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.19 71.98 0.66 -0.90 16 2 C -0.09 -1.17 2.91 -10.79 -0.03 -1.21 16 3 C -0.15 -2.58 8.92 71.98 0.64 -1.94 16 4 C -0.04 -0.57 5.18 29.85 0.15 -0.41 16 5 C -0.18 -3.64 4.79 -20.12 -0.10 -3.74 16 6 C 0.04 0.69 11.80 83.48 0.99 1.68 16 7 N -0.53 -10.88 5.39 -183.61 -0.99 -11.87 16 8 H 0.43 6.87 5.51 -92.71 -0.51 6.36 16 9 C -0.07 -2.24 6.86 40.35 0.28 -1.96 16 10 C 0.59 23.21 7.88 86.45 0.68 23.89 16 11 O -0.59 -28.83 17.17 -4.34 -0.07 -28.91 16 12 N -0.62 -22.12 3.31 -810.34 -2.68 -24.80 16 13 C 0.10 2.40 5.48 86.68 0.48 2.87 16 14 C -0.08 -1.96 3.95 -9.32 -0.04 -2.00 16 15 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 16 C -0.10 -2.21 6.37 31.10 0.20 -2.01 16 17 C -0.13 -3.34 6.50 31.24 0.20 -3.14 16 18 C 0.17 5.91 3.53 45.50 0.16 6.07 16 19 H 0.05 2.00 7.91 -2.39 -0.02 1.98 16 20 N -0.72 -32.77 2.89 -320.52 -0.93 -33.70 16 21 C -0.23 -12.38 9.39 84.03 0.79 -11.59 16 22 H 0.07 3.76 7.74 -2.91 -0.02 3.74 16 23 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 24 N -0.96 -57.42 13.06 21.65 0.28 -57.13 16 25 Si 0.96 46.78 29.55 68.60 2.03 48.81 16 26 H -0.30 -14.94 7.11 99.48 0.71 -14.24 16 27 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 28 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 29 C -0.12 -3.77 3.93 -9.47 -0.04 -3.80 16 30 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 31 C 0.11 4.40 6.27 86.53 0.54 4.95 16 32 C -0.11 -3.20 9.27 22.57 0.21 -2.99 16 33 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.04 0.90 6.41 -2.39 -0.02 0.88 16 39 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 42 H 0.21 1.38 8.06 -2.91 -0.02 1.36 16 43 H 0.08 2.02 7.22 -2.38 -0.02 2.00 16 44 H 0.10 1.71 5.14 -2.38 -0.01 1.70 16 45 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.06 1.41 7.13 -2.39 -0.02 1.39 16 47 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 48 H 0.06 1.74 8.09 -2.39 -0.02 1.72 16 49 H 0.38 18.49 7.65 -92.71 -0.71 17.78 16 50 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 51 H 0.03 1.50 7.84 -2.39 -0.02 1.48 16 52 H 0.10 4.77 5.18 -2.38 -0.01 4.76 16 53 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -73.82 408.36 3.58 -70.24 By element: Atomic # 1 Polarization: 37.32 SS G_CDS: -0.30 Total: 37.01 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 6.24 Total: 0.35 kcal Atomic # 7 Polarization: -123.19 SS G_CDS: -4.31 Total: -127.51 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -0.07 Total: -28.91 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -73.82 3.58 -70.24 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026402932.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.457 kcal (2) G-P(sol) polarization free energy of solvation -73.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds