Wall clock time and date at job start Wed Apr 1 2020 04:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46900 * 109.47269 * 358.47357 * 3 2 1 5 5 C 1.46844 * 111.00139 * 65.78430 * 4 3 2 6 6 C 1.53042 * 109.52608 * 185.84143 * 5 4 3 7 7 C 1.53119 * 109.27752 * 300.82679 * 6 5 4 8 8 C 1.50699 * 109.52541 * 177.55657 * 7 6 5 9 9 O 1.21284 * 119.99565 * 325.08692 * 8 7 6 10 10 N 1.34777 * 120.00217 * 145.08338 * 8 7 6 11 11 C 1.48342 * 128.19548 * 4.75387 * 10 8 7 12 12 C 1.54883 * 104.09558 * 138.19547 * 11 10 8 13 13 H 1.08999 * 112.10670 * 263.91214 * 12 11 10 14 14 C 1.54149 * 108.65000 * 138.74954 * 12 11 10 15 15 C 1.54832 * 104.35132 * 224.15937 * 14 12 11 16 16 C 1.56522 * 103.25238 * 37.79326 * 15 14 12 17 17 H 1.09000 * 110.38700 * 80.94992 * 16 15 14 18 18 N 1.46506 * 111.28870 * 204.04143 * 16 15 14 19 19 C 1.36940 * 119.99806 * 269.44274 * 18 16 15 20 20 H 1.08003 * 119.99970 * 359.97438 * 19 18 16 21 21 C 1.38806 * 119.99603 * 179.97438 * 19 18 16 22 22 N 1.31621 * 120.00123 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 120.00409 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47242 * 89.99741 * 23 21 19 25 25 H 1.48501 * 109.47305 * 210.00326 * 23 21 19 26 26 H 1.48504 * 109.46874 * 330.00102 * 23 21 19 27 27 C 1.54143 * 103.55233 * 322.71253 * 16 15 14 28 28 H 1.09004 * 111.89351 * 259.63456 * 27 16 15 29 29 C 1.48339 * 128.19789 * 185.08036 * 10 8 7 30 30 C 1.53123 * 109.16422 * 57.64977 * 7 6 5 31 31 C 1.46839 * 111.00237 * 190.00060 * 4 3 2 32 32 H 4.40888 * 5.52101 * 179.97438 * 4 1 2 33 33 H 1.08998 * 109.47015 * 238.47117 * 3 2 1 34 34 H 1.09003 * 109.46954 * 118.47163 * 3 2 1 35 35 H 1.08998 * 109.46345 * 65.82745 * 5 4 3 36 36 H 1.09000 * 109.46767 * 305.85814 * 5 4 3 37 37 H 1.08993 * 109.50867 * 180.88174 * 6 5 4 38 38 H 1.09001 * 109.50246 * 60.76341 * 6 5 4 39 39 H 1.09005 * 109.52083 * 297.74545 * 7 6 5 40 40 H 1.09000 * 110.46511 * 256.93560 * 11 10 8 41 41 H 1.08999 * 110.46583 * 19.52349 * 11 10 8 42 42 H 1.09000 * 110.45584 * 342.88322 * 14 12 11 43 43 H 1.09006 * 110.45358 * 105.32120 * 14 12 11 44 44 H 1.08993 * 110.75897 * 156.53929 * 15 14 12 45 45 H 1.09005 * 110.76089 * 279.92472 * 15 14 12 46 46 H 0.96991 * 120.00046 * 89.43638 * 18 16 15 47 47 H 0.96999 * 120.00416 * 180.02562 * 22 21 19 48 48 H 1.09008 * 110.46347 * 340.47076 * 29 10 8 49 49 H 1.08995 * 110.46911 * 103.05906 * 29 10 8 50 50 H 1.09002 * 109.50008 * 62.28657 * 30 7 6 51 51 H 1.08998 * 109.50415 * 182.36875 * 30 7 6 52 52 H 1.08998 * 109.46598 * 54.14014 * 31 4 3 53 53 H 1.09002 * 109.46365 * 294.17602 * 31 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1363 -1.3836 0.0369 5 6 2.7819 -2.1004 -1.1947 6 6 3.1782 -3.5727 -1.0617 7 6 4.6852 -3.6696 -0.8081 8 6 5.0718 -5.1135 -0.6166 9 8 4.3103 -5.8766 -0.0610 10 7 6.2638 -5.5569 -1.0627 11 6 7.3642 -4.7718 -1.6738 12 6 8.6465 -5.3558 -1.0306 13 1 8.9790 -4.7699 -0.1738 14 6 9.7302 -5.4830 -2.1195 15 6 10.3534 -6.8799 -1.8794 16 6 9.1216 -7.7580 -1.4774 17 1 8.5765 -8.0770 -2.3658 18 7 9.5323 -8.9184 -0.6829 19 6 9.8415 -10.0989 -1.3043 20 1 9.7822 -10.1745 -2.3801 21 6 10.2311 -11.1981 -0.5516 22 7 10.5278 -12.3329 -1.1488 23 14 10.3343 -11.0670 1.3090 24 1 9.0249 -11.4358 1.9046 25 1 11.3844 -11.9884 1.8126 26 1 10.6758 -9.6726 1.6887 27 6 8.2584 -6.8029 -0.6296 28 1 8.3867 -6.9790 0.4384 29 6 6.7834 -6.9463 -1.0650 30 6 5.0348 -2.8747 0.4531 31 6 4.5846 -1.4227 0.2761 32 1 -1.0498 -0.0004 0.0002 33 1 3.0091 0.5382 0.8759 34 1 3.0091 0.4907 -0.9034 35 1 3.3109 -1.6568 -2.0382 36 1 1.7072 -2.0273 -1.3612 37 1 2.9294 -4.1011 -1.9819 38 1 2.6392 -4.0207 -0.2270 39 1 5.2253 -3.2569 -1.6602 40 1 7.3788 -4.9132 -2.7545 41 1 7.2605 -3.7150 -1.4281 42 1 9.2813 -5.4314 -3.1115 43 1 10.4822 -4.7028 -2.0014 44 1 10.8187 -7.2570 -2.7900 45 1 11.0732 -6.8464 -1.0616 46 1 9.5853 -8.8505 0.2832 47 1 10.7997 -13.1012 -0.6228 48 1 6.2334 -7.5600 -0.3514 49 1 6.7212 -7.3749 -2.0652 50 1 4.5249 -3.3117 1.3117 51 1 6.1122 -2.9050 0.6154 52 1 4.8192 -0.8573 1.1779 53 1 5.1052 -0.9822 -0.5742 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026425031.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:48 Heat of formation + Delta-G solvation = 17.015823 kcal Electronic energy + Delta-G solvation = -30622.988102 eV Core-core repulsion = 26688.023756 eV Total energy + Delta-G solvation = -3934.964345 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.63655 -40.35984 -39.14475 -36.73695 -35.53450 -34.97128 -33.13149 -33.08911 -31.88684 -30.91568 -29.88286 -28.26605 -26.71590 -25.40945 -24.39415 -24.23680 -23.77632 -21.70660 -21.02523 -20.52068 -19.93268 -19.31123 -19.01308 -18.24997 -17.26651 -17.16964 -16.69814 -16.35524 -16.17819 -15.97193 -15.69670 -15.41721 -15.19812 -14.83616 -14.69625 -14.55191 -14.42523 -14.02354 -13.95807 -13.84834 -13.59810 -13.50863 -13.12530 -13.05207 -12.91488 -12.62876 -12.52510 -12.21083 -12.19418 -12.11228 -11.92131 -11.83739 -11.75700 -11.54869 -11.51775 -11.43565 -11.39847 -11.30635 -11.03513 -10.96698 -10.66283 -9.78249 -9.29920 -9.26655 -8.03042 -5.35139 1.35056 1.38573 1.44926 1.56208 1.77376 1.91126 1.94889 2.46705 3.08736 3.24867 3.33871 3.45425 3.53978 3.64132 3.68483 3.79167 3.84009 3.91212 4.15955 4.19382 4.21877 4.35363 4.36337 4.40559 4.45533 4.47766 4.53492 4.57498 4.58186 4.64568 4.67584 4.71743 4.74124 4.81158 4.84667 4.90891 4.93803 5.01491 5.04740 5.07858 5.14277 5.15103 5.19357 5.29216 5.34207 5.42140 5.48661 5.59201 5.78279 6.03706 6.11535 6.22043 6.59551 6.73859 7.07836 7.12486 7.85836 8.02473 9.18466 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.022136 B = 0.002097 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.600168 B =13346.478822 C =13844.093779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.210 4.210 3 C 0.163 3.837 4 N -0.558 5.558 5 C 0.067 3.933 6 C -0.098 4.098 7 C -0.090 4.090 8 C 0.531 3.469 9 O -0.595 6.595 10 N -0.623 5.623 11 C 0.105 3.895 12 C -0.089 4.089 13 H 0.105 0.895 14 C -0.100 4.100 15 C -0.141 4.141 16 C 0.176 3.824 17 H 0.053 0.947 18 N -0.749 5.749 19 C -0.225 4.225 20 H 0.059 0.941 21 C -0.065 4.065 22 N -0.983 5.983 23 Si 0.950 3.050 24 H -0.285 1.285 25 H -0.296 1.296 26 H -0.251 1.251 27 C -0.105 4.105 28 H 0.071 0.929 29 C 0.112 3.888 30 C -0.101 4.101 31 C 0.064 3.936 32 H 0.238 0.762 33 H 0.111 0.889 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.052 0.948 39 H 0.118 0.882 40 H 0.092 0.908 41 H 0.114 0.886 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.050 0.950 45 H 0.054 0.946 46 H 0.363 0.637 47 H 0.256 0.744 48 H 0.048 0.952 49 H 0.074 0.926 50 H 0.051 0.949 51 H 0.092 0.908 52 H 0.096 0.904 53 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.931 34.049 -1.065 36.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.210 4.210 3 C 0.037 3.963 4 N -0.283 5.283 5 C -0.061 4.061 6 C -0.137 4.137 7 C -0.111 4.111 8 C 0.322 3.678 9 O -0.475 6.475 10 N -0.356 5.356 11 C -0.016 4.016 12 C -0.109 4.109 13 H 0.123 0.877 14 C -0.138 4.138 15 C -0.181 4.181 16 C 0.068 3.932 17 H 0.071 0.929 18 N -0.391 5.391 19 C -0.356 4.356 20 H 0.077 0.923 21 C -0.256 4.256 22 N -0.634 5.634 23 Si 0.778 3.222 24 H -0.212 1.212 25 H -0.223 1.223 26 H -0.176 1.176 27 C -0.126 4.126 28 H 0.090 0.910 29 C -0.011 4.011 30 C -0.139 4.139 31 C -0.063 4.063 32 H 0.254 0.746 33 H 0.129 0.871 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.136 0.864 40 H 0.110 0.890 41 H 0.132 0.868 42 H 0.101 0.899 43 H 0.108 0.892 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.196 0.804 47 H 0.065 0.935 48 H 0.067 0.933 49 H 0.092 0.908 50 H 0.070 0.930 51 H 0.110 0.890 52 H 0.114 0.886 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.623 33.305 -0.525 35.621 hybrid contribution 0.198 -1.209 0.553 1.344 sum -12.425 32.096 0.028 34.417 Atomic orbital electron populations 1.25654 0.96955 0.98801 1.00819 1.23449 0.95292 1.01508 1.00776 1.19095 0.84393 0.89419 1.03400 1.61799 1.15381 1.13975 1.37150 1.21994 1.00934 0.92595 0.90558 1.21408 0.93615 0.96721 1.01919 1.21359 0.98309 0.89542 1.01930 1.21028 0.79124 0.91152 0.76523 1.90692 1.52332 1.59704 1.44807 1.49375 1.15970 1.09779 1.60429 1.23092 0.83207 0.97154 0.98179 1.22802 0.95279 0.93530 0.99243 0.87672 1.22321 0.97418 0.95830 0.98221 1.23320 0.98309 0.96158 1.00353 1.21660 0.93560 0.85231 0.92778 0.92921 1.42817 1.82184 1.09160 1.04914 1.19042 1.35774 0.88348 0.92398 0.92294 1.25450 1.02422 0.95478 1.02252 1.69872 1.54654 1.02692 1.36206 0.85479 0.77162 0.78178 0.81366 1.21186 1.22252 1.17583 1.22935 0.93306 0.96658 0.99687 0.91009 1.22442 0.93647 0.84088 1.00970 1.21521 1.02042 0.94981 0.95380 1.22099 0.85718 0.95648 1.02788 0.74566 0.87076 0.90760 0.92569 0.91174 0.91329 0.92950 0.86361 0.88963 0.86828 0.89850 0.89224 0.93138 0.92763 0.80379 0.93479 0.93344 0.90779 0.93041 0.88993 0.88596 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.76 19.25 74.32 1.43 -1.33 16 2 C -0.21 -3.12 12.34 31.13 0.38 -2.74 16 3 C 0.16 1.70 5.46 84.50 0.46 2.16 16 4 N -0.56 -7.44 4.63 -907.47 -4.21 -11.65 16 5 C 0.07 0.93 5.30 86.33 0.46 1.39 16 6 C -0.10 -1.82 5.08 30.65 0.16 -1.67 16 7 C -0.09 -1.48 2.07 -11.46 -0.02 -1.51 16 8 C 0.53 13.89 6.92 87.66 0.61 14.49 16 9 O -0.59 -22.07 16.50 -3.04 -0.05 -22.12 16 10 N -0.62 -14.61 3.31 -805.82 -2.66 -17.28 16 11 C 0.10 1.49 6.18 86.67 0.54 2.03 16 12 C -0.09 -1.60 3.97 -9.04 -0.04 -1.63 16 13 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 14 C -0.10 -1.76 6.38 31.61 0.20 -1.56 16 15 C -0.14 -4.10 6.65 32.45 0.22 -3.89 16 16 C 0.18 6.21 3.15 46.61 0.15 6.35 16 17 H 0.05 1.99 7.14 -2.39 -0.02 1.97 16 18 N -0.75 -34.40 5.06 -315.32 -1.59 -35.99 16 19 C -0.22 -12.73 10.44 84.03 0.88 -11.85 16 20 H 0.06 3.65 8.06 -2.91 -0.02 3.62 16 21 C -0.06 -3.85 5.50 84.86 0.47 -3.38 16 22 N -0.98 -63.63 13.97 21.65 0.30 -63.33 16 23 Si 0.95 46.45 27.73 68.60 1.90 48.35 16 24 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 25 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 26 H -0.25 -11.04 6.52 99.48 0.65 -10.39 16 27 C -0.11 -2.97 3.59 -9.19 -0.03 -3.00 16 28 H 0.07 2.22 7.79 -2.38 -0.02 2.20 16 29 C 0.11 3.32 6.58 86.52 0.57 3.89 16 30 C -0.10 -1.40 5.36 30.65 0.16 -1.23 16 31 C 0.06 0.59 5.46 86.33 0.47 1.06 16 32 H 0.24 1.66 7.80 -4.43 -0.03 1.62 16 33 H 0.11 0.83 7.99 -2.39 -0.02 0.81 16 34 H 0.07 0.53 8.12 -2.39 -0.02 0.51 16 35 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.07 1.10 7.11 -2.39 -0.02 1.09 16 37 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.05 1.33 7.78 -2.39 -0.02 1.31 16 39 H 0.12 1.20 6.99 -2.38 -0.02 1.19 16 40 H 0.09 1.11 7.21 -2.39 -0.02 1.09 16 41 H 0.11 0.83 7.09 -2.39 -0.02 0.81 16 42 H 0.08 1.25 7.18 -2.39 -0.02 1.23 16 43 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 44 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 46 H 0.36 16.32 5.46 -92.71 -0.51 15.81 16 47 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 48 H 0.05 1.74 7.85 -2.38 -0.02 1.73 16 49 H 0.07 2.22 7.21 -2.39 -0.02 2.21 16 50 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 51 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 52 H 0.10 0.66 8.02 -2.39 -0.02 0.64 16 53 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 Total: -1.00 -80.03 412.00 1.06 -78.96 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: 0.32 Total: 25.46 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: 7.05 Total: -2.41 kcal Atomic # 7 Polarization: -120.08 SS G_CDS: -8.16 Total: -128.24 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.05 Total: -22.12 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 1.90 Total: 48.35 kcal Total: -80.03 1.06 -78.96 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026425031.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.978 kcal (2) G-P(sol) polarization free energy of solvation -80.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds