Wall clock time and date at job start Wed Apr 1 2020 04:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46903 * 109.46670 * 181.57067 * 3 2 1 5 5 C 1.46849 * 110.99799 * 190.00091 * 4 3 2 6 6 C 1.53038 * 109.52215 * 185.84008 * 5 4 3 7 7 C 1.53117 * 109.27870 * 300.82024 * 6 5 4 8 8 C 1.50698 * 109.52346 * 177.55957 * 7 6 5 9 9 O 1.21281 * 119.99905 * 326.29450 * 8 7 6 10 10 N 1.34774 * 120.00125 * 146.29381 * 8 7 6 11 11 C 1.49625 * 126.07329 * 175.11131 * 10 8 7 12 12 C 1.51522 * 102.49464 * 154.34936 * 11 10 8 13 13 H 1.08994 * 111.13453 * 287.40870 * 12 11 10 14 14 C 1.51566 * 123.33563 * 151.62707 * 12 11 10 15 15 C 1.56330 * 101.81931 * 207.99137 * 14 12 11 16 16 C 1.56003 * 105.76821 * 25.43720 * 15 14 12 17 17 H 1.09000 * 110.53062 * 248.19291 * 16 15 14 18 18 N 1.46498 * 110.52712 * 125.58298 * 16 15 14 19 19 C 1.36941 * 120.00065 * 88.34321 * 18 16 15 20 20 H 1.08005 * 119.99646 * 359.97438 * 19 18 16 21 21 C 1.38809 * 120.00187 * 180.02562 * 19 18 16 22 22 N 1.31620 * 119.99699 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 120.00040 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47214 * 269.99979 * 23 21 19 25 25 H 1.48494 * 109.47293 * 30.00338 * 23 21 19 26 26 H 1.48503 * 109.47004 * 150.00014 * 23 21 19 27 27 C 1.49707 * 104.10963 * 6.89255 * 16 15 14 28 28 H 1.08993 * 108.54566 * 78.04102 * 27 16 15 29 29 C 1.49284 * 126.07332 * 355.11370 * 10 8 7 30 30 C 1.53121 * 109.21405 * 57.62436 * 7 6 5 31 31 C 1.46846 * 111.00255 * 314.21141 * 4 3 2 32 32 H 4.40886 * 5.52221 * 180.02562 * 4 1 2 33 33 H 1.08992 * 109.47221 * 61.57497 * 3 2 1 34 34 H 1.08998 * 109.46865 * 301.57123 * 3 2 1 35 35 H 1.08996 * 109.45989 * 65.82368 * 5 4 3 36 36 H 1.09004 * 109.45249 * 305.84668 * 5 4 3 37 37 H 1.08994 * 109.50140 * 180.87679 * 6 5 4 38 38 H 1.09001 * 109.53637 * 60.77730 * 6 5 4 39 39 H 1.08996 * 109.52292 * 297.68895 * 7 6 5 40 40 H 1.08997 * 110.79999 * 36.10232 * 11 10 8 41 41 H 1.08993 * 110.96984 * 272.68027 * 11 10 8 42 42 H 1.08998 * 110.96063 * 89.85749 * 14 12 11 43 43 H 1.09010 * 110.95977 * 326.12677 * 14 12 11 44 44 H 1.09002 * 110.19219 * 266.36641 * 15 14 12 45 45 H 1.09000 * 110.25868 * 144.54674 * 15 14 12 46 46 H 0.97001 * 120.00320 * 268.34774 * 18 16 15 47 47 H 0.97003 * 120.00151 * 179.97438 * 22 21 19 48 48 H 1.09005 * 110.39180 * 292.40965 * 29 10 8 49 49 H 1.08997 * 110.39743 * 54.68946 * 29 10 8 50 50 H 1.09008 * 109.50188 * 62.31677 * 30 7 6 51 51 H 1.08991 * 109.50576 * 182.43651 * 30 7 6 52 52 H 1.08999 * 109.46217 * 294.17904 * 31 4 3 53 53 H 1.09006 * 109.46287 * 54.15226 * 31 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 1.3854 0.0380 5 6 4.5833 1.4388 -0.1988 6 6 5.0801 2.8737 -0.0085 7 6 4.3496 3.7958 -0.9885 8 6 4.7909 5.2192 -0.7651 9 8 5.0723 5.5986 0.3520 10 7 4.8728 6.0708 -1.8065 11 6 5.1935 7.5302 -1.7281 12 6 5.7791 7.8111 -3.0971 13 1 6.7755 7.3800 -3.1943 14 6 5.7011 9.1646 -3.7746 15 6 5.7331 8.7682 -5.2865 16 6 5.1752 7.3129 -5.3551 17 1 5.9623 6.6148 -5.6402 18 7 4.0561 7.2357 -6.2973 19 6 4.2928 6.9845 -7.6225 20 1 5.3047 6.8437 -7.9731 21 6 3.2325 6.9118 -8.5154 22 7 3.4602 6.6708 -9.7892 23 14 1.4826 7.1560 -7.9092 24 1 0.9104 5.8458 -7.5079 25 1 1.4868 8.0730 -6.7413 26 1 0.6595 7.7434 -8.9968 27 6 4.7072 7.0354 -3.9605 28 1 3.7466 7.5287 -3.8126 29 6 4.6596 5.7255 -3.2431 30 6 2.8403 3.6853 -0.7548 31 6 2.4087 2.2265 -0.9220 32 1 -1.0502 -0.0004 0.0002 33 1 3.0096 -0.4883 -0.9037 34 1 3.0096 -0.5372 0.8756 35 1 4.7971 1.1123 -1.2165 36 1 5.0910 0.7820 0.5077 37 1 6.1523 2.9158 -0.1994 38 1 4.8794 3.1964 1.0132 39 1 4.5825 3.4984 -2.0110 40 1 5.9275 7.7237 -0.9460 41 1 4.2913 8.1195 -1.5646 42 1 6.5618 9.7809 -3.5148 43 1 4.7698 9.6728 -3.5244 44 1 6.7562 8.7968 -5.6614 45 1 5.1014 9.4409 -5.8666 46 1 3.1474 7.3626 -5.9826 47 1 2.7192 6.6197 -10.4131 48 1 5.4550 5.0702 -3.5984 49 1 3.6880 5.2507 -3.3796 50 1 2.6029 4.0207 0.2548 51 1 2.3135 4.3069 -1.4787 52 1 2.6328 1.8964 -1.9363 53 1 1.3371 2.1419 -0.7409 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026425032.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:52 Heat of formation + Delta-G solvation = 34.638923 kcal Electronic energy + Delta-G solvation = -30914.089955 eV Core-core repulsion = 26979.889805 eV Total energy + Delta-G solvation = -3934.200151 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.88774 -40.63206 -39.27332 -36.87093 -35.60528 -35.09679 -33.28314 -32.97204 -31.82717 -30.77032 -30.31421 -28.23741 -27.12335 -25.22093 -24.43512 -24.24770 -23.74257 -21.58802 -21.09519 -20.62721 -20.01178 -19.50718 -19.01203 -18.05618 -17.63060 -16.99616 -16.66648 -16.32736 -16.09395 -16.03187 -15.80272 -15.71147 -15.13778 -15.02199 -14.71705 -14.52277 -14.34062 -14.31527 -14.03445 -13.75587 -13.64949 -13.43116 -13.22885 -13.09277 -13.01187 -12.68076 -12.53244 -12.37288 -12.20966 -12.17083 -12.09327 -11.84310 -11.77635 -11.62980 -11.60124 -11.41923 -11.33662 -11.09194 -11.03953 -10.96222 -10.69847 -9.74950 -9.33740 -9.27779 -7.99247 -5.32056 1.39430 1.41912 1.49351 1.54048 1.72805 1.79810 1.90050 2.50530 2.90349 3.03272 3.31920 3.41141 3.44261 3.50855 3.70106 3.77726 3.87563 3.91794 4.09602 4.16239 4.18210 4.30195 4.33875 4.37972 4.40882 4.46448 4.50274 4.54246 4.57155 4.65365 4.66722 4.67489 4.69142 4.75550 4.82124 4.86358 4.87893 4.90977 4.98053 5.05059 5.08471 5.10622 5.17580 5.20132 5.32374 5.34412 5.48408 5.52903 5.82514 5.96676 6.04833 6.25414 6.42698 6.67479 7.07864 7.11314 7.87786 8.05957 9.22412 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.009290 B = 0.003003 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3013.358869 B = 9320.588602 C =11553.134165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.216 4.216 3 C 0.161 3.839 4 N -0.548 5.548 5 C 0.061 3.939 6 C -0.095 4.095 7 C -0.100 4.100 8 C 0.535 3.465 9 O -0.580 6.580 10 N -0.623 5.623 11 C 0.123 3.877 12 C -0.105 4.105 13 H 0.093 0.907 14 C -0.089 4.089 15 C -0.139 4.139 16 C 0.197 3.803 17 H 0.054 0.946 18 N -0.747 5.747 19 C -0.223 4.223 20 H 0.059 0.941 21 C -0.064 4.064 22 N -0.986 5.986 23 Si 0.950 3.050 24 H -0.278 1.278 25 H -0.252 1.252 26 H -0.301 1.301 27 C -0.125 4.125 28 H 0.071 0.929 29 C 0.127 3.873 30 C -0.096 4.096 31 C 0.061 3.939 32 H 0.241 0.759 33 H 0.069 0.931 34 H 0.112 0.888 35 H 0.048 0.952 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.100 0.900 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.052 0.948 46 H 0.365 0.635 47 H 0.256 0.744 48 H 0.080 0.920 49 H 0.080 0.920 50 H 0.062 0.938 51 H 0.074 0.926 52 H 0.041 0.959 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.584 -8.919 22.375 24.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.217 4.217 3 C 0.035 3.965 4 N -0.273 5.273 5 C -0.067 4.067 6 C -0.133 4.133 7 C -0.121 4.121 8 C 0.325 3.675 9 O -0.461 6.461 10 N -0.357 5.357 11 C 0.002 3.998 12 C -0.124 4.124 13 H 0.111 0.889 14 C -0.128 4.128 15 C -0.180 4.180 16 C 0.089 3.911 17 H 0.072 0.928 18 N -0.390 5.390 19 C -0.354 4.354 20 H 0.077 0.923 21 C -0.255 4.255 22 N -0.636 5.636 23 Si 0.778 3.222 24 H -0.204 1.204 25 H -0.177 1.177 26 H -0.228 1.228 27 C -0.144 4.144 28 H 0.089 0.911 29 C 0.006 3.994 30 C -0.135 4.135 31 C -0.067 4.067 32 H 0.258 0.742 33 H 0.086 0.914 34 H 0.130 0.870 35 H 0.066 0.934 36 H 0.117 0.883 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.118 0.882 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.103 0.897 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.198 0.802 47 H 0.065 0.935 48 H 0.099 0.901 49 H 0.099 0.901 50 H 0.081 0.919 51 H 0.093 0.907 52 H 0.059 0.941 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.780 -8.648 23.315 24.879 hybrid contribution -1.209 -0.003 -1.305 1.779 sum -0.429 -8.651 22.010 23.653 Atomic orbital electron populations 1.25696 0.96885 0.98409 1.00274 1.23297 0.95150 1.01902 1.01308 1.19176 0.84395 0.89784 1.03130 1.62054 1.04788 1.08793 1.51650 1.22133 0.86635 0.96726 1.01164 1.21412 0.99320 0.93457 0.99123 1.21383 0.97619 0.90576 1.02566 1.20680 0.76156 0.87819 0.82822 1.90663 1.51742 1.79219 1.24443 1.49946 1.69121 1.09806 1.06845 1.21676 1.00260 0.80553 0.97340 1.22500 0.98916 0.97955 0.93065 0.88920 1.21799 1.02888 0.94884 0.93189 1.23589 1.00765 0.97380 0.96245 1.20096 0.89541 0.95189 0.86294 0.92835 1.42865 1.04596 1.86842 1.04662 1.19021 0.93680 1.38315 0.84343 0.92347 1.25445 1.01850 1.02873 0.95359 1.69880 1.31836 1.58560 1.03373 0.85481 0.80701 0.78389 0.77618 1.20449 1.17681 1.22850 1.21843 1.00481 0.96596 0.95526 0.91061 1.21052 1.02468 0.96921 0.78979 1.21423 0.92694 0.96887 1.02446 1.22053 0.98858 0.92022 0.93783 0.74206 0.91361 0.86993 0.93365 0.88265 0.90439 0.91601 0.88192 0.90355 0.90685 0.89684 0.90965 0.91863 0.92890 0.80193 0.93520 0.90148 0.90145 0.91907 0.90722 0.94080 0.90364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.95 19.01 74.32 1.41 -1.54 16 2 C -0.22 -3.73 11.51 31.13 0.36 -3.37 16 3 C 0.16 2.30 5.77 84.50 0.49 2.78 16 4 N -0.55 -9.27 4.79 -907.44 -4.35 -13.62 16 5 C 0.06 0.87 5.42 86.33 0.47 1.33 16 6 C -0.09 -1.74 5.07 30.65 0.16 -1.58 16 7 C -0.10 -2.00 2.30 -11.46 -0.03 -2.03 16 8 C 0.54 13.71 6.89 87.66 0.60 14.32 16 9 O -0.58 -18.90 16.51 -3.03 -0.05 -18.95 16 10 N -0.62 -14.65 3.43 -815.64 -2.79 -17.45 16 11 C 0.12 2.70 6.73 85.29 0.57 3.27 16 12 C -0.10 -2.24 3.14 -9.97 -0.03 -2.27 16 13 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 14 C -0.09 -1.91 6.62 31.28 0.21 -1.70 16 15 C -0.14 -4.08 6.74 32.79 0.22 -3.86 16 16 C 0.20 6.51 3.43 44.98 0.15 6.67 16 17 H 0.05 1.87 8.10 -2.39 -0.02 1.85 16 18 N -0.75 -31.80 4.91 -323.01 -1.59 -33.39 16 19 C -0.22 -11.95 10.45 84.03 0.88 -11.08 16 20 H 0.06 3.46 8.06 -2.91 -0.02 3.44 16 21 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 22 N -0.99 -61.70 13.97 21.65 0.30 -61.39 16 23 Si 0.95 43.84 27.74 68.60 1.90 45.74 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 25 H -0.25 -10.43 6.52 99.48 0.65 -9.78 16 26 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 27 C -0.12 -3.19 2.19 -11.22 -0.02 -3.22 16 28 H 0.07 1.90 7.75 -2.39 -0.02 1.88 16 29 C 0.13 2.89 5.86 84.69 0.50 3.39 16 30 C -0.10 -1.90 5.36 30.65 0.16 -1.74 16 31 C 0.06 1.10 5.07 86.33 0.44 1.54 16 32 H 0.24 2.00 7.80 -4.41 -0.03 1.97 16 33 H 0.07 0.83 8.08 -2.39 -0.02 0.81 16 34 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.10 1.09 8.12 -2.38 -0.02 1.07 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.49 7.78 -2.39 -0.02 1.47 16 39 H 0.10 1.78 7.15 -2.39 -0.02 1.76 16 40 H 0.08 1.76 8.04 -2.39 -0.02 1.74 16 41 H 0.07 1.59 8.14 -2.39 -0.02 1.58 16 42 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 44 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.05 1.79 7.98 -2.39 -0.02 1.78 16 46 H 0.36 15.03 5.51 -92.71 -0.51 14.52 16 47 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 48 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 49 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 50 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 51 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 52 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 53 H 0.08 1.50 6.36 -2.38 -0.02 1.48 16 Total: -1.00 -70.49 414.03 0.73 -69.76 By element: Atomic # 1 Polarization: 31.25 SS G_CDS: 0.30 Total: 31.55 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 7.00 Total: -2.25 kcal Atomic # 7 Polarization: -117.42 SS G_CDS: -8.43 Total: -125.85 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.05 Total: -18.95 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.90 Total: 45.74 kcal Total: -70.49 0.73 -69.76 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026425032.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.396 kcal (2) G-P(sol) polarization free energy of solvation -70.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds