Wall clock time and date at job start Wed Apr 1 2020 04:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46903 * 109.47227 * 343.35126 * 3 2 1 5 5 C 1.46853 * 110.99574 * 169.99971 * 4 3 2 6 6 C 1.53041 * 109.51808 * 185.83593 * 5 4 3 7 7 C 1.53111 * 109.28121 * 300.82530 * 6 5 4 8 8 C 1.50698 * 109.52334 * 177.56069 * 7 6 5 9 9 O 1.21278 * 119.99946 * 326.30880 * 8 7 6 10 10 N 1.34783 * 120.00347 * 146.31645 * 8 7 6 11 11 C 1.49214 * 126.05553 * 355.12420 * 10 8 7 12 12 C 1.50345 * 104.86429 * 172.93826 * 11 10 8 13 13 H 1.08998 * 109.73768 * 279.05569 * 12 11 10 14 14 C 1.51006 * 125.54637 * 144.29809 * 12 11 10 15 15 C 1.56404 * 101.63214 * 203.98392 * 14 12 11 16 16 C 1.56893 * 105.75418 * 24.56254 * 15 14 12 17 17 H 1.08996 * 110.22198 * 126.56057 * 16 15 14 18 18 N 1.46498 * 111.26259 * 249.43036 * 16 15 14 19 19 C 1.36937 * 119.99640 * 269.69877 * 18 16 15 20 20 H 1.07998 * 120.00426 * 359.97438 * 19 18 16 21 21 C 1.38810 * 120.00113 * 180.02562 * 19 18 16 22 22 N 1.31618 * 119.99970 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 120.00381 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46629 * 359.97438 * 23 21 19 25 25 H 1.48490 * 109.47300 * 119.99521 * 23 21 19 26 26 H 1.48497 * 109.46832 * 239.99804 * 23 21 19 27 27 C 1.50290 * 103.75713 * 8.24294 * 16 15 14 28 28 H 1.09000 * 109.98824 * 79.79665 * 27 16 15 29 29 C 1.49689 * 126.06158 * 175.12975 * 10 8 7 30 30 C 1.53118 * 109.21868 * 57.61944 * 7 6 5 31 31 C 1.46840 * 110.99766 * 294.20897 * 4 3 2 32 32 H 4.40884 * 5.52246 * 179.97438 * 4 1 2 33 33 H 1.08998 * 109.47204 * 223.35027 * 3 2 1 34 34 H 1.09004 * 109.47341 * 103.35288 * 3 2 1 35 35 H 1.08994 * 109.46041 * 65.82602 * 5 4 3 36 36 H 1.09000 * 109.46389 * 305.85351 * 5 4 3 37 37 H 1.08997 * 109.49915 * 180.87792 * 6 5 4 38 38 H 1.09003 * 109.49937 * 60.76420 * 6 5 4 39 39 H 1.09006 * 109.52271 * 297.68751 * 7 6 5 40 40 H 1.09006 * 110.36203 * 54.09028 * 11 10 8 41 41 H 1.09005 * 110.36066 * 291.78413 * 11 10 8 42 42 H 1.09012 * 110.99771 * 322.07958 * 14 12 11 43 43 H 1.08993 * 111.00162 * 85.88116 * 14 12 11 44 44 H 1.09000 * 110.18644 * 144.11992 * 15 14 12 45 45 H 1.08995 * 110.18269 * 265.96084 * 15 14 12 46 46 H 0.96999 * 120.00314 * 89.69472 * 18 16 15 47 47 H 0.97006 * 120.00339 * 180.02562 * 22 21 19 48 48 H 1.08997 * 110.84629 * 36.65825 * 29 10 8 49 49 H 1.09001 * 110.84563 * 273.05251 * 29 10 8 50 50 H 1.08999 * 109.50152 * 62.31889 * 30 7 6 51 51 H 1.08995 * 109.50811 * 182.43949 * 30 7 6 52 52 H 1.09009 * 109.46742 * 294.17534 * 31 4 3 53 53 H 1.08997 * 109.46328 * 54.15689 * 31 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1362 -1.3261 0.3968 5 6 4.5847 -1.4377 0.1819 6 6 5.0348 -2.8724 0.4669 7 6 4.6851 -3.2342 1.9129 8 6 5.0717 -4.6657 2.1815 9 8 4.9900 -5.4920 1.2975 10 7 5.5082 -5.0279 3.4042 11 6 5.7576 -4.1113 4.5549 12 6 6.0552 -5.0204 5.7147 13 1 5.1231 -5.3964 6.1364 14 6 7.0466 -4.7393 6.8185 15 6 7.3859 -6.1838 7.3131 16 6 7.0894 -7.1307 6.0978 17 1 7.9615 -7.7466 5.8785 18 7 5.9191 -7.9738 6.3544 19 6 6.0746 -9.1999 6.9438 20 1 7.0600 -9.5457 7.2192 21 6 4.9659 -9.9991 7.1865 22 7 3.7650 -9.5780 6.8505 23 14 5.1779 -11.6715 7.9913 24 1 6.6173 -11.9079 8.2696 25 1 4.4145 -11.7085 9.2644 26 1 4.6706 -12.7276 7.0790 27 6 6.8163 -6.1825 4.9642 28 1 7.7556 -5.8085 4.5568 29 6 5.8287 -6.4210 3.8484 30 6 3.1784 -3.0626 2.1251 31 6 2.7818 -1.6228 1.7905 32 1 -1.0498 -0.0004 0.0003 33 1 3.0089 0.7481 0.7054 34 1 3.0092 0.2382 -0.9999 35 1 5.1050 -0.7539 0.8524 36 1 4.8193 -1.1818 -0.8514 37 1 6.1123 -2.9511 0.3224 38 1 4.5250 -3.5554 -0.2126 39 1 5.2259 -2.5769 2.5939 40 1 4.8710 -3.5114 4.7609 41 1 6.6126 -3.4674 4.3484 42 1 7.9345 -4.2412 6.4286 43 1 6.5892 -4.1513 7.6141 44 1 8.4354 -6.2461 7.6008 45 1 6.7478 -6.4526 8.1549 46 1 5.0341 -7.6634 6.1068 47 1 2.9901 -10.1363 7.0204 48 1 6.2870 -6.9902 3.0397 49 1 4.9366 -6.9242 4.2212 50 1 2.6386 -3.7488 1.4725 51 1 2.9304 -3.2772 3.1646 52 1 3.3107 -0.9381 2.4536 53 1 1.7070 -1.5016 1.9256 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026425033.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:57 Heat of formation + Delta-G solvation = 30.147229 kcal Electronic energy + Delta-G solvation = -30867.974160 eV Core-core repulsion = 26933.579235 eV Total energy + Delta-G solvation = -3934.394925 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.85990 -40.59189 -39.20085 -36.64701 -35.51981 -35.03349 -33.15374 -32.60172 -31.84844 -30.80895 -29.89271 -28.21729 -26.97269 -25.17618 -25.13067 -24.20001 -23.70369 -21.17707 -21.05851 -20.35299 -19.90949 -19.41641 -19.00731 -18.00093 -17.50745 -16.90612 -16.72399 -16.27757 -15.99098 -15.79983 -15.75034 -15.65796 -15.31037 -14.98017 -14.79258 -14.62659 -14.27080 -14.04030 -13.84258 -13.70554 -13.58582 -13.25037 -13.17065 -12.96950 -12.88976 -12.66413 -12.54342 -12.36148 -12.18158 -12.16468 -12.02522 -11.81140 -11.78201 -11.53214 -11.50077 -11.40570 -11.30444 -11.03129 -10.99539 -10.88384 -10.65456 -9.71620 -9.29684 -8.97559 -7.93904 -5.21007 1.45722 1.46771 1.56159 1.57336 1.77661 1.84668 1.95381 2.56043 2.98833 3.09006 3.40464 3.45017 3.54010 3.74109 3.76107 3.81910 3.94878 4.02413 4.14517 4.20218 4.24656 4.33353 4.35788 4.39589 4.47158 4.49296 4.53483 4.57613 4.62113 4.66334 4.67437 4.71874 4.73974 4.84306 4.85549 4.93046 4.96399 4.99954 5.03861 5.12138 5.13232 5.15930 5.22207 5.23487 5.36789 5.39366 5.45885 5.55185 5.68729 6.04089 6.11099 6.28945 6.52574 6.74380 7.12482 7.34882 8.12774 8.34114 9.29684 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.016087 B = 0.002265 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.066822 B =12361.100645 C =12992.408357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.210 4.210 3 C 0.163 3.837 4 N -0.558 5.558 5 C 0.066 3.934 6 C -0.099 4.099 7 C -0.089 4.089 8 C 0.525 3.475 9 O -0.593 6.593 10 N -0.623 5.623 11 C 0.124 3.876 12 C -0.113 4.113 13 H 0.054 0.946 14 C -0.079 4.079 15 C -0.140 4.140 16 C 0.180 3.820 17 H 0.048 0.952 18 N -0.728 5.728 19 C -0.232 4.232 20 H 0.077 0.923 21 C -0.079 4.079 22 N -0.971 5.971 23 Si 0.968 3.032 24 H -0.265 1.265 25 H -0.295 1.295 26 H -0.299 1.299 27 C -0.118 4.118 28 H 0.101 0.899 29 C 0.131 3.869 30 C -0.101 4.101 31 C 0.068 3.932 32 H 0.238 0.762 33 H 0.075 0.925 34 H 0.111 0.889 35 H 0.061 0.939 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.118 0.882 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.096 0.904 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.044 0.956 46 H 0.372 0.628 47 H 0.248 0.752 48 H 0.054 0.946 49 H 0.044 0.956 50 H 0.047 0.953 51 H 0.076 0.924 52 H 0.060 0.940 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.910 26.856 -9.194 28.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.210 4.210 3 C 0.037 3.963 4 N -0.283 5.283 5 C -0.061 4.061 6 C -0.137 4.137 7 C -0.111 4.111 8 C 0.315 3.685 9 O -0.474 6.474 10 N -0.357 5.357 11 C 0.004 3.996 12 C -0.132 4.132 13 H 0.072 0.928 14 C -0.117 4.117 15 C -0.181 4.181 16 C 0.070 3.930 17 H 0.066 0.934 18 N -0.368 5.368 19 C -0.364 4.364 20 H 0.095 0.905 21 C -0.271 4.271 22 N -0.622 5.622 23 Si 0.798 3.202 24 H -0.189 1.189 25 H -0.222 1.222 26 H -0.227 1.227 27 C -0.138 4.138 28 H 0.119 0.881 29 C 0.009 3.991 30 C -0.139 4.139 31 C -0.060 4.060 32 H 0.254 0.746 33 H 0.093 0.907 34 H 0.129 0.871 35 H 0.080 0.920 36 H 0.113 0.887 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.136 0.864 40 H 0.109 0.891 41 H 0.123 0.877 42 H 0.114 0.886 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.063 0.937 46 H 0.205 0.795 47 H 0.057 0.943 48 H 0.073 0.927 49 H 0.062 0.938 50 H 0.066 0.934 51 H 0.095 0.905 52 H 0.078 0.922 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.749 25.952 -9.959 28.049 hybrid contribution -0.751 -1.385 0.851 1.791 sum 2.998 24.567 -9.108 26.372 Atomic orbital electron populations 1.25652 0.96941 0.99053 1.00521 1.23429 0.95256 1.01358 1.00962 1.19089 0.84414 0.89753 1.03012 1.61797 1.15230 1.28641 1.22659 1.22086 0.85780 0.95320 1.02918 1.21445 1.01405 0.97147 0.93692 1.21355 0.98382 0.90866 1.00453 1.21082 0.75521 0.91800 0.80050 1.90674 1.56070 1.55272 1.45383 1.50023 1.65271 1.08537 1.11857 1.21492 1.03044 0.91593 0.83476 1.22166 0.99094 0.96354 0.95617 0.92763 1.21644 0.98035 0.95845 0.96154 1.23820 1.00942 0.94913 0.98404 1.20605 0.89736 0.90368 0.92260 0.93372 1.42579 1.04906 1.16949 1.72399 1.19680 0.93151 0.93900 1.29683 0.90504 1.25506 0.95292 1.02411 1.03845 1.69822 0.98092 1.38904 1.55378 0.85140 0.77697 0.80110 0.77256 1.18877 1.22214 1.22686 1.22323 0.98587 0.98462 0.94451 0.88074 1.21165 0.97949 0.83624 0.96349 1.21454 0.92985 0.97747 1.01716 1.21986 1.01047 0.94778 0.88171 0.74563 0.90678 0.87096 0.92045 0.88701 0.90268 0.92843 0.86358 0.89104 0.87738 0.88588 0.90476 0.90691 0.93741 0.79516 0.94308 0.92713 0.93773 0.93367 0.90529 0.92237 0.90964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.13 19.25 74.32 1.43 -1.69 16 2 C -0.21 -3.51 12.34 31.12 0.38 -3.12 16 3 C 0.16 2.04 5.46 84.50 0.46 2.50 16 4 N -0.56 -8.89 4.64 -907.43 -4.21 -13.10 16 5 C 0.07 0.84 5.46 86.33 0.47 1.31 16 6 C -0.10 -1.87 5.07 30.65 0.16 -1.72 16 7 C -0.09 -1.81 2.29 -11.46 -0.03 -1.83 16 8 C 0.53 16.01 6.89 87.66 0.60 16.62 16 9 O -0.59 -24.13 16.51 -3.02 -0.05 -24.18 16 10 N -0.62 -18.04 3.43 -815.12 -2.79 -20.83 16 11 C 0.12 2.49 5.84 85.00 0.50 2.99 16 12 C -0.11 -2.88 2.72 -10.56 -0.03 -2.91 16 13 H 0.05 1.78 7.63 -2.39 -0.02 1.76 16 14 C -0.08 -1.69 6.71 31.13 0.21 -1.48 16 15 C -0.14 -4.22 6.80 33.14 0.23 -3.99 16 16 C 0.18 6.65 3.47 45.48 0.16 6.80 16 17 H 0.05 1.83 8.09 -2.39 -0.02 1.81 16 18 N -0.73 -35.67 4.84 -320.63 -1.55 -37.22 16 19 C -0.23 -12.73 9.96 84.03 0.84 -11.89 16 20 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 21 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 22 N -0.97 -60.19 13.06 21.65 0.28 -59.91 16 23 Si 0.97 46.76 29.55 68.60 2.03 48.79 16 24 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 26 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 27 C -0.12 -3.63 2.60 -10.61 -0.03 -3.66 16 28 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 29 C 0.13 4.76 6.53 85.08 0.56 5.32 16 30 C -0.10 -2.08 5.37 30.65 0.16 -1.92 16 31 C 0.07 1.09 5.30 86.33 0.46 1.54 16 32 H 0.24 2.10 7.80 -4.43 -0.03 2.06 16 33 H 0.08 0.67 8.12 -2.39 -0.02 0.65 16 34 H 0.11 1.06 7.99 -2.39 -0.02 1.04 16 35 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.09 0.97 8.02 -2.39 -0.02 0.95 16 37 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.05 1.38 7.78 -2.39 -0.02 1.36 16 39 H 0.12 1.62 7.15 -2.38 -0.02 1.60 16 40 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 41 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 42 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 43 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.04 1.61 8.01 -2.39 -0.02 1.59 16 46 H 0.37 19.89 6.14 -92.71 -0.57 19.33 16 47 H 0.25 15.03 8.31 -92.70 -0.77 14.26 16 48 H 0.05 2.16 8.06 -2.39 -0.02 2.15 16 49 H 0.04 1.94 6.90 -2.39 -0.02 1.93 16 50 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 51 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 52 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 53 H 0.07 1.28 7.11 -2.39 -0.02 1.26 16 Total: -1.00 -75.93 415.38 1.01 -74.92 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: 0.31 Total: 32.74 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 6.99 Total: -1.21 kcal Atomic # 7 Polarization: -122.79 SS G_CDS: -8.27 Total: -131.06 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.05 Total: -24.18 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -75.93 1.01 -74.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026425033.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.066 kcal (2) G-P(sol) polarization free energy of solvation -75.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds