Wall clock time and date at job start Wed Apr 1 2020 03:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47359 * 2 1 4 4 C 1.53003 * 109.47394 * 120.00314 * 2 1 3 5 5 H 1.08994 * 109.47014 * 304.88443 * 4 2 1 6 6 C 1.50696 * 109.46654 * 64.88586 * 4 2 1 7 7 O 1.21278 * 120.00661 * 34.31160 * 6 4 2 8 8 N 1.34777 * 119.99588 * 214.30850 * 6 4 2 9 9 C 1.46928 * 120.63286 * 354.26618 * 8 6 4 10 10 C 1.53193 * 108.77313 * 126.39075 * 9 8 6 11 11 C 1.53038 * 109.31357 * 54.64198 * 10 9 8 12 12 C 1.53039 * 109.53656 * 298.62972 * 11 10 9 13 13 H 1.08993 * 109.50178 * 301.38632 * 12 11 10 14 14 N 1.46503 * 109.49958 * 181.31459 * 12 11 10 15 15 C 1.46497 * 119.99865 * 300.00429 * 14 12 11 16 16 C 1.36931 * 119.99808 * 120.00315 * 14 12 11 17 17 H 1.08008 * 120.00080 * 325.51368 * 16 14 12 18 18 C 1.38812 * 120.00203 * 145.79830 * 16 14 12 19 19 N 1.31621 * 119.99582 * 4.42771 * 18 16 14 20 20 Si 1.86804 * 120.00184 * 184.43749 * 18 16 14 21 21 H 1.48501 * 109.47145 * 89.99413 * 20 18 16 22 22 H 1.48496 * 109.46770 * 209.99314 * 20 18 16 23 23 H 1.48501 * 109.46872 * 329.99343 * 20 18 16 24 24 C 1.46931 * 120.63483 * 174.27030 * 8 6 4 25 25 C 1.50693 * 109.46838 * 184.88198 * 4 2 1 26 26 C 1.38654 * 120.79502 * 299.71664 * 25 4 2 27 27 C 1.38209 * 119.15869 * 179.75759 * 26 25 4 28 28 N 1.31865 * 120.76644 * 0.53316 * 27 26 25 29 29 C 1.31866 * 121.72613 * 359.74014 * 28 27 26 30 30 C 1.38201 * 120.76831 * 359.97438 * 29 28 27 31 31 H 1.09007 * 109.47120 * 304.95613 * 1 2 3 32 32 H 1.08997 * 109.47498 * 64.95815 * 1 2 3 33 33 H 1.09004 * 109.47072 * 184.95816 * 1 2 3 34 34 H 1.09004 * 109.46745 * 240.00361 * 2 1 3 35 35 H 1.08997 * 109.47440 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.46965 * 300.00461 * 3 2 1 37 37 H 1.09004 * 109.46681 * 59.99700 * 3 2 1 38 38 H 1.09005 * 109.58320 * 6.60681 * 9 8 6 39 39 H 1.08991 * 109.59119 * 246.17951 * 9 8 6 40 40 H 1.09000 * 109.49963 * 294.68675 * 10 9 8 41 41 H 1.09004 * 109.52081 * 174.60874 * 10 9 8 42 42 H 1.09001 * 109.45766 * 178.61164 * 11 10 9 43 43 H 1.08996 * 109.45952 * 58.65016 * 11 10 9 44 44 H 1.09005 * 109.47264 * 274.88248 * 15 14 12 45 45 H 1.08998 * 109.47406 * 34.88771 * 15 14 12 46 46 H 1.09003 * 109.46728 * 154.88609 * 15 14 12 47 47 H 0.97003 * 119.99549 * 180.02562 * 19 18 16 48 48 H 1.09000 * 109.58681 * 113.81739 * 24 8 6 49 49 H 1.09009 * 109.58235 * 353.39630 * 24 8 6 50 50 H 1.08001 * 120.41523 * 0.02562 * 26 25 4 51 51 H 1.08000 * 119.60930 * 180.25618 * 27 26 25 52 52 H 1.08008 * 119.61644 * 179.97438 * 29 28 27 53 53 H 1.07998 * 120.42510 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6071 -0.2606 2.1370 6 6 1.6389 -2.1727 1.1900 7 8 1.5945 -2.7466 0.1226 8 7 1.3296 -2.8330 2.3235 9 6 1.4986 -2.1907 3.6340 10 6 0.1752 -2.2788 4.4006 11 6 -0.2730 -3.7404 4.4703 12 6 -0.4988 -4.2746 3.0541 13 1 -1.2516 -3.6671 2.5518 14 7 -0.9580 -5.6641 3.1229 15 6 -0.1165 -6.6831 3.7552 16 6 -2.1736 -6.0103 2.5964 17 1 -2.9996 -5.3158 2.6422 18 6 -2.3462 -7.2561 2.0089 19 7 -1.3687 -8.1371 2.0352 20 14 -3.9656 -7.6820 1.1809 21 1 -3.9077 -7.2908 -0.2505 22 1 -4.2053 -9.1438 1.2852 23 1 -5.0711 -6.9501 1.8498 24 6 0.8170 -4.2091 2.2722 25 6 3.5421 -0.6174 1.3110 26 6 4.3320 -1.1367 0.2966 27 6 5.7061 -1.0181 0.3854 28 7 6.2666 -0.4293 1.4237 29 6 5.5472 0.0710 2.4091 30 6 4.1675 -0.0052 2.3866 31 1 -0.3634 0.5888 0.8423 32 1 -0.3634 0.4350 -0.9310 33 1 -0.3633 -1.0239 0.0888 34 1 1.8932 -0.5138 -0.8901 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9563 -0.8899 37 1 1.6766 1.9563 0.8900 38 1 1.7718 -1.1445 3.4956 39 1 2.2803 -2.7035 4.1943 40 1 -0.5836 -1.6897 3.8855 41 1 0.3127 -1.8918 5.4104 42 1 -1.2019 -3.8087 5.0366 43 1 0.4973 -4.3333 4.9635 44 1 0.5982 -7.0670 3.0271 45 1 0.4212 -6.2411 4.5939 46 1 -0.7429 -7.4995 4.1147 47 1 -1.4892 -9.0075 1.6244 48 1 1.5431 -4.8865 2.7214 49 1 0.6404 -4.4948 1.2351 50 1 3.8789 -1.6238 -0.5542 51 1 6.3281 -1.4163 -0.4026 52 1 6.0420 0.5458 3.2435 53 1 3.5837 0.4067 3.1964 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027546086.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:58 Heat of formation + Delta-G solvation = -4.148316 kcal Electronic energy + Delta-G solvation = -32099.543000 eV Core-core repulsion = 28163.660909 eV Total energy + Delta-G solvation = -3935.882091 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.02719 -40.69845 -39.10924 -37.13360 -36.77816 -34.07390 -33.45371 -32.83648 -32.12160 -30.80628 -28.92512 -28.04778 -28.01656 -26.19798 -25.27788 -24.48220 -23.50899 -23.05053 -21.90263 -20.56655 -19.79583 -18.84274 -18.39896 -17.96036 -17.14060 -16.94332 -16.85383 -16.50598 -16.03853 -15.76689 -15.51366 -15.28969 -15.21797 -15.13319 -14.57723 -14.51412 -14.45544 -14.38439 -14.00031 -13.77604 -13.62290 -13.45811 -13.25173 -13.01043 -12.91120 -12.83294 -12.63207 -12.55452 -12.26219 -12.20387 -12.15204 -12.05361 -11.95328 -11.78026 -11.73258 -11.52463 -11.36670 -11.02825 -10.63669 -10.43230 -10.33213 -10.06736 -9.69302 -8.63008 -7.93060 -5.47423 0.20800 0.22070 1.40864 1.43997 1.51524 1.56742 1.94857 2.45553 2.85204 3.25076 3.43970 3.45513 3.60378 3.62320 3.65544 3.84676 4.01394 4.05568 4.08186 4.13157 4.18097 4.24187 4.24426 4.34997 4.36990 4.43662 4.61806 4.63372 4.69473 4.73329 4.78079 4.79190 4.88196 4.90999 4.95169 4.96368 4.96769 5.02877 5.06344 5.16134 5.22050 5.24648 5.30724 5.35626 5.41699 5.43581 5.49806 5.56542 5.61456 5.67168 5.77927 6.35595 6.45234 7.03829 7.12559 7.15602 7.81071 8.29776 9.11778 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.014546 B = 0.003035 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.450163 B = 9222.628590 C = 9627.393493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.075 4.075 3 C -0.136 4.136 4 C -0.054 4.054 5 H 0.135 0.865 6 C 0.516 3.484 7 O -0.585 6.585 8 N -0.604 5.604 9 C 0.099 3.901 10 C -0.122 4.122 11 C -0.124 4.124 12 C 0.169 3.831 13 H 0.046 0.954 14 N -0.609 5.609 15 C 0.180 3.820 16 C -0.274 4.274 17 H 0.065 0.935 18 C -0.040 4.040 19 N -0.931 5.931 20 Si 0.964 3.036 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.264 1.264 24 C 0.117 3.883 25 C -0.031 4.031 26 C -0.175 4.175 27 C 0.089 3.911 28 N -0.509 5.509 29 C 0.095 3.905 30 C -0.154 4.154 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.024 0.976 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.118 0.882 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.111 0.889 42 H 0.057 0.943 43 H 0.059 0.941 44 H -0.014 1.014 45 H 0.027 0.973 46 H 0.030 0.970 47 H 0.250 0.750 48 H 0.049 0.951 49 H 0.040 0.960 50 H 0.118 0.882 51 H 0.164 0.836 52 H 0.187 0.813 53 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.532 23.996 5.169 26.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.094 4.094 3 C -0.193 4.193 4 C -0.075 4.075 5 H 0.153 0.847 6 C 0.304 3.696 7 O -0.465 6.465 8 N -0.336 5.336 9 C -0.022 4.022 10 C -0.160 4.160 11 C -0.163 4.163 12 C 0.061 3.939 13 H 0.065 0.935 14 N -0.331 5.331 15 C 0.035 3.965 16 C -0.404 4.404 17 H 0.083 0.917 18 C -0.236 4.236 19 N -0.576 5.576 20 Si 0.792 3.208 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.189 1.189 24 C -0.008 4.008 25 C -0.040 4.040 26 C -0.195 4.195 27 C -0.066 4.066 28 N -0.219 5.219 29 C -0.062 4.062 30 C -0.174 4.174 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.136 0.864 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.129 0.871 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.005 0.995 45 H 0.045 0.955 46 H 0.049 0.951 47 H 0.059 0.941 48 H 0.068 0.932 49 H 0.059 0.941 50 H 0.136 0.864 51 H 0.181 0.819 52 H 0.204 0.796 53 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 11.412 23.554 4.616 26.577 hybrid contribution -1.790 -1.713 -1.269 2.783 sum 9.622 21.842 3.347 24.101 Atomic orbital electron populations 1.21844 0.94507 1.00720 1.03328 1.20977 0.96087 0.97044 0.95323 1.21781 1.00691 0.93401 1.03394 1.20534 0.92614 0.90953 1.03422 0.84707 1.21041 0.75988 0.89472 0.83054 1.90678 1.54676 1.70247 1.30861 1.48347 1.63450 1.14314 1.07503 1.22187 0.98550 0.99643 0.81824 1.21903 0.96584 0.95267 1.02246 1.21916 1.01264 0.96855 0.96282 1.20796 0.92476 0.85509 0.95083 0.93524 1.44019 1.18222 1.04142 1.66759 1.20487 0.92754 0.90697 0.92569 1.19433 0.88980 1.00665 1.31336 0.91744 1.26094 1.00780 0.97998 0.98753 1.70185 1.33554 1.06350 1.47492 0.85324 0.79983 0.76887 0.78623 1.21612 1.21636 1.18870 1.21906 0.96503 0.82205 1.00184 1.19858 0.93604 0.95910 0.94601 1.22124 0.95627 1.01240 1.00467 1.22895 0.92378 0.95186 0.96155 1.67705 1.42007 1.09860 1.02308 1.23328 0.91303 0.95035 0.96539 1.22399 0.96386 0.99933 0.98639 0.90178 0.91600 0.95701 0.92474 0.93027 0.91740 0.90285 0.86400 0.90365 0.91324 0.87070 0.92392 0.92206 0.99535 0.95464 0.95141 0.94067 0.93218 0.94126 0.86373 0.81910 0.79606 0.80694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.08 71.98 0.65 -2.41 16 2 C -0.08 -1.51 2.02 -10.79 -0.02 -1.53 16 3 C -0.14 -1.86 8.87 71.98 0.64 -1.22 16 4 C -0.05 -1.08 1.28 -12.29 -0.02 -1.09 16 5 H 0.14 1.74 5.78 -2.39 -0.01 1.72 16 6 C 0.52 15.91 5.33 87.66 0.47 16.37 16 7 O -0.58 -24.12 15.01 -3.02 -0.05 -24.16 16 8 N -0.60 -18.13 2.97 -818.88 -2.43 -20.56 16 9 C 0.10 1.87 6.30 86.36 0.54 2.41 16 10 C -0.12 -2.34 6.08 30.67 0.19 -2.15 16 11 C -0.12 -3.73 5.10 30.62 0.16 -3.58 16 12 C 0.17 6.92 2.75 45.07 0.12 7.04 16 13 H 0.05 2.04 7.89 -2.39 -0.02 2.02 16 14 N -0.61 -31.00 2.80 -702.34 -1.97 -32.97 16 15 C 0.18 9.02 7.97 127.77 1.02 10.04 16 16 C -0.27 -15.43 9.46 84.03 0.79 -14.63 16 17 H 0.06 3.54 7.83 -2.91 -0.02 3.52 16 18 C -0.04 -2.29 5.33 84.86 0.45 -1.84 16 19 N -0.93 -56.40 10.69 21.65 0.23 -56.17 16 20 Si 0.96 46.07 29.56 68.60 2.03 48.10 16 21 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 22 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 23 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 24 C 0.12 4.75 5.77 86.36 0.50 5.25 16 25 C -0.03 -0.58 3.29 -19.67 -0.06 -0.65 16 26 C -0.17 -4.02 8.98 22.36 0.20 -3.82 16 27 C 0.09 1.92 11.18 84.68 0.95 2.86 16 28 N -0.51 -10.61 10.36 -195.84 -2.03 -12.64 16 29 C 0.09 1.39 11.18 84.68 0.95 2.34 16 30 C -0.15 -1.96 9.66 22.36 0.22 -1.74 16 31 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.02 0.69 7.07 -2.38 -0.02 0.68 16 34 H 0.06 1.48 7.22 -2.39 -0.02 1.46 16 35 H 0.05 0.76 7.07 -2.39 -0.02 0.75 16 36 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.12 1.30 5.24 -2.38 -0.01 1.29 16 39 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 42 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.06 1.80 6.75 -2.39 -0.02 1.78 16 44 H -0.01 -0.76 7.80 -2.38 -0.02 -0.78 16 45 H 0.03 1.15 6.48 -2.39 -0.02 1.14 16 46 H 0.03 1.66 6.97 -2.39 -0.02 1.64 16 47 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 48 H 0.05 2.08 7.51 -2.39 -0.02 2.06 16 49 H 0.04 2.03 7.04 -2.38 -0.02 2.01 16 50 H 0.12 3.18 7.39 -2.91 -0.02 3.16 16 51 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 52 H 0.19 1.45 8.06 -2.91 -0.02 1.42 16 53 H 0.18 0.78 8.01 -2.91 -0.02 0.76 16 Total: -1.00 -77.24 407.99 4.41 -72.83 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.88 Total: 13.93 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 7.74 Total: 11.65 kcal Atomic # 7 Polarization: -116.14 SS G_CDS: -6.20 Total: -122.34 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.05 Total: -24.16 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -77.24 4.41 -72.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027546086.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.684 kcal (2) G-P(sol) polarization free energy of solvation -77.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds