Wall clock time and date at job start Wed Apr 1 2020 03:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47215 * 2 1 4 4 C 1.53009 * 109.47179 * 119.99642 * 2 1 3 5 5 H 1.08991 * 109.46686 * 304.90015 * 4 2 1 6 6 C 1.50694 * 109.46825 * 64.90084 * 4 2 1 7 7 O 1.21280 * 120.00362 * 34.39598 * 6 4 2 8 8 N 1.34780 * 119.99996 * 214.39129 * 6 4 2 9 9 C 1.46921 * 120.62811 * 354.33772 * 8 6 4 10 10 C 1.53190 * 108.77875 * 126.41183 * 9 8 6 11 11 C 1.53041 * 109.30898 * 54.63301 * 10 9 8 12 12 C 1.53043 * 109.54330 * 298.63826 * 11 10 9 13 13 H 1.09002 * 109.51872 * 301.40206 * 12 11 10 14 14 N 1.46491 * 109.50255 * 181.31740 * 12 11 10 15 15 C 1.46500 * 120.00007 * 300.16327 * 14 12 11 16 16 C 1.36939 * 120.00456 * 120.15887 * 14 12 11 17 17 H 1.08001 * 119.99471 * 334.89832 * 16 14 12 18 18 C 1.38806 * 120.00204 * 154.89611 * 16 14 12 19 19 N 1.31610 * 119.99997 * 4.71807 * 18 16 14 20 20 Si 1.86806 * 119.99856 * 184.71659 * 18 16 14 21 21 H 1.48499 * 109.46902 * 89.99985 * 20 18 16 22 22 H 1.48498 * 109.46966 * 210.00003 * 20 18 16 23 23 H 1.48502 * 109.47149 * 330.00131 * 20 18 16 24 24 C 1.46924 * 120.63114 * 174.36117 * 8 6 4 25 25 C 1.50700 * 109.47057 * 184.89827 * 4 2 1 26 26 C 1.38678 * 120.41522 * 120.00013 * 25 4 2 27 27 C 1.38624 * 118.41976 * 180.02562 * 26 25 4 28 28 C 1.38229 * 119.16146 * 359.97438 * 27 26 25 29 29 N 1.31854 * 120.76619 * 0.02562 * 28 27 26 30 30 C 1.31894 * 121.72126 * 359.69869 * 29 28 27 31 31 H 1.08993 * 109.47401 * 304.96458 * 1 2 3 32 32 H 1.09004 * 109.46947 * 64.96855 * 1 2 3 33 33 H 1.09009 * 109.46864 * 184.96564 * 1 2 3 34 34 H 1.09002 * 109.47528 * 239.99718 * 2 1 3 35 35 H 1.08999 * 109.47467 * 180.02562 * 3 2 1 36 36 H 1.09011 * 109.46904 * 299.99565 * 3 2 1 37 37 H 1.08992 * 109.47169 * 59.99426 * 3 2 1 38 38 H 1.09000 * 109.58666 * 246.19929 * 9 8 6 39 39 H 1.08997 * 109.58792 * 6.47939 * 9 8 6 40 40 H 1.09001 * 109.49880 * 174.58227 * 10 9 8 41 41 H 1.08994 * 109.49749 * 294.68743 * 10 9 8 42 42 H 1.09000 * 109.46125 * 178.61204 * 11 10 9 43 43 H 1.08999 * 109.46125 * 58.65838 * 11 10 9 44 44 H 1.09005 * 109.46937 * 264.84912 * 15 14 12 45 45 H 1.08997 * 109.47086 * 24.84496 * 15 14 12 46 46 H 1.09000 * 109.47466 * 144.85144 * 15 14 12 47 47 H 0.97009 * 119.99801 * 180.02562 * 19 18 16 48 48 H 1.09003 * 109.58843 * 113.79829 * 24 8 6 49 49 H 1.08992 * 109.70630 * 353.44175 * 24 8 6 50 50 H 1.08003 * 120.78724 * 0.02562 * 26 25 4 51 51 H 1.08004 * 120.41873 * 179.97438 * 27 26 25 52 52 H 1.07994 * 119.61624 * 179.97438 * 28 27 26 53 53 H 1.08001 * 119.61366 * 180.30773 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.6068 -0.2605 2.1370 6 6 1.6392 -2.1727 1.1902 7 8 1.5966 -2.7470 0.1229 8 7 1.3282 -2.8326 2.3234 9 6 1.4936 -2.1891 3.6338 10 6 0.1689 -2.2787 4.3980 11 6 -0.2772 -3.7410 4.4676 12 6 -0.4994 -4.2765 3.0512 13 1 -1.2519 -3.6704 2.5466 14 7 -0.9566 -5.6665 3.1201 15 6 -0.1165 -6.6832 3.7578 16 6 -2.1694 -6.0156 2.5884 17 1 -2.9497 -5.2752 2.4916 18 6 -2.3957 -7.3208 2.1740 19 7 -1.4797 -8.2438 2.3766 20 14 -4.0007 -7.7674 1.3288 21 1 -3.8534 -7.5903 -0.1383 22 1 -4.3391 -9.1826 1.6251 23 1 -5.0853 -6.8842 1.8275 24 6 0.8178 -4.2094 2.2719 25 6 3.5421 -0.6170 1.3115 26 6 4.1592 -0.0030 2.3910 27 6 5.5435 0.0704 2.4055 28 6 6.2575 -0.4674 1.3511 29 7 5.6370 -1.0440 0.3407 30 6 4.3221 -1.1367 0.2962 31 1 -0.3634 0.5889 0.8421 32 1 -0.3633 0.4348 -0.9312 33 1 -0.3633 -1.0239 0.0890 34 1 1.8934 -0.5139 -0.8899 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9563 -0.8901 37 1 1.6766 1.9563 0.8899 38 1 2.2750 -2.7005 4.1960 39 1 1.7680 -1.1434 3.4953 40 1 0.3045 -1.8912 5.4077 41 1 -0.5897 -1.6912 3.8810 42 1 -1.2071 -3.8104 5.0321 43 1 0.4929 -4.3324 4.9627 44 1 0.4776 -7.1919 2.9986 45 1 0.5470 -6.2061 4.4790 46 1 -0.7491 -7.4082 4.2701 47 1 -1.6377 -9.1559 2.0867 48 1 1.5441 -4.8856 2.7230 49 1 0.6441 -4.4984 1.2354 50 1 3.5752 0.4081 3.2012 51 1 6.0575 0.5419 3.2301 52 1 7.3361 -0.4138 1.3546 53 1 3.8494 -1.6206 -0.5457 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027632097.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:59 Heat of formation + Delta-G solvation = -0.668436 kcal Electronic energy + Delta-G solvation = -32088.290995 eV Core-core repulsion = 28152.559803 eV Total energy + Delta-G solvation = -3935.731193 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.03364 -40.69538 -39.09674 -37.06136 -36.79969 -34.07137 -33.45732 -32.81825 -32.43330 -30.67925 -28.67934 -28.09011 -27.92501 -26.15572 -25.25230 -24.59714 -23.48290 -23.04443 -21.87992 -20.54551 -19.78147 -18.85821 -18.39317 -18.08982 -17.20215 -16.98362 -16.88375 -16.66078 -15.82910 -15.75423 -15.48235 -15.25982 -15.18734 -15.06819 -14.56908 -14.47387 -14.36765 -14.02546 -13.94049 -13.75357 -13.61365 -13.51018 -13.42725 -13.07079 -13.00253 -12.79272 -12.74282 -12.51662 -12.19846 -12.16935 -12.13225 -12.03543 -11.88526 -11.74821 -11.71300 -11.52635 -11.38089 -10.98350 -10.65508 -10.59296 -10.36240 -9.87819 -9.68689 -8.75931 -7.87718 -5.35899 0.12011 0.36638 1.41316 1.44806 1.51971 1.59094 1.95998 2.46953 2.83916 3.27747 3.45102 3.47313 3.60797 3.67022 3.73425 3.86427 4.00638 4.06079 4.07430 4.10921 4.15445 4.21856 4.24855 4.36678 4.38505 4.47486 4.63091 4.64821 4.69799 4.70648 4.78342 4.79829 4.86143 4.88493 4.94765 4.96948 5.00134 5.06449 5.16500 5.20936 5.23069 5.27446 5.31690 5.36551 5.42371 5.43820 5.50337 5.57516 5.61004 5.75238 5.79340 6.31537 6.46775 7.04282 7.13165 7.17508 7.84207 8.27419 9.15163 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.014822 B = 0.003002 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.573144 B = 9325.835580 C = 9737.267788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 C -0.134 4.134 4 C -0.046 4.046 5 H 0.136 0.864 6 C 0.514 3.486 7 O -0.586 6.586 8 N -0.604 5.604 9 C 0.100 3.900 10 C -0.121 4.121 11 C -0.124 4.124 12 C 0.170 3.830 13 H 0.048 0.952 14 N -0.613 5.613 15 C 0.185 3.815 16 C -0.266 4.266 17 H 0.070 0.930 18 C -0.049 4.049 19 N -0.937 5.937 20 Si 0.966 3.034 21 H -0.291 1.291 22 H -0.291 1.291 23 H -0.265 1.265 24 C 0.116 3.884 25 C -0.124 4.124 26 C -0.062 4.062 27 C -0.158 4.158 28 C 0.080 3.920 29 N -0.518 5.518 30 C 0.088 3.912 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.024 0.976 34 H 0.053 0.947 35 H 0.049 0.951 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.119 0.881 40 H 0.111 0.889 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.059 0.941 44 H -0.010 1.010 45 H 0.027 0.973 46 H 0.027 0.973 47 H 0.248 0.752 48 H 0.050 0.950 49 H 0.041 0.959 50 H 0.177 0.823 51 H 0.175 0.825 52 H 0.176 0.824 53 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.161 25.755 6.660 29.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.096 4.096 3 C -0.191 4.191 4 C -0.068 4.068 5 H 0.154 0.846 6 C 0.303 3.697 7 O -0.466 6.466 8 N -0.336 5.336 9 C -0.021 4.021 10 C -0.160 4.160 11 C -0.164 4.164 12 C 0.062 3.938 13 H 0.066 0.934 14 N -0.336 5.336 15 C 0.041 3.959 16 C -0.396 4.396 17 H 0.088 0.912 18 C -0.244 4.244 19 N -0.584 5.584 20 Si 0.794 3.206 21 H -0.218 1.218 22 H -0.217 1.217 23 H -0.190 1.190 24 C -0.010 4.010 25 C -0.127 4.127 26 C -0.088 4.088 27 C -0.177 4.177 28 C -0.077 4.077 29 N -0.227 5.227 30 C -0.068 4.068 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.137 0.863 40 H 0.129 0.871 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.008 0.992 45 H 0.045 0.955 46 H 0.046 0.954 47 H 0.057 0.943 48 H 0.068 0.932 49 H 0.060 0.940 50 H 0.194 0.806 51 H 0.193 0.807 52 H 0.193 0.807 53 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 12.611 24.907 5.402 28.436 hybrid contribution -1.383 -1.382 -0.612 2.049 sum 11.228 23.525 4.791 26.504 Atomic orbital electron populations 1.21837 0.94460 1.00734 1.03289 1.20993 0.96124 0.97072 0.95437 1.21760 1.00551 0.93422 1.03360 1.20418 0.92505 0.90630 1.03215 0.84648 1.21148 0.75861 0.89661 0.83012 1.90682 1.54716 1.70311 1.30938 1.48330 1.63550 1.14185 1.07543 1.22181 0.98502 0.99673 0.81792 1.21900 0.96625 0.95165 1.02272 1.21937 1.01250 0.96931 0.96233 1.20768 0.92609 0.85199 0.95235 0.93405 1.44130 1.18574 1.04301 1.66580 1.20511 0.92331 0.89890 0.93184 1.19544 0.90899 0.95109 1.34042 0.91246 1.25909 1.01292 0.97006 1.00209 1.70270 1.35603 1.01632 1.50848 0.85277 0.79792 0.77091 0.78396 1.21810 1.21706 1.18984 1.21926 0.96457 0.82349 1.00236 1.20358 0.94361 1.01121 0.96839 1.21945 0.95446 0.94793 0.96572 1.22536 0.94571 1.00211 1.00414 1.23361 1.01900 0.93032 0.89400 1.67681 1.10872 1.16304 1.27820 1.22503 0.89600 0.96505 0.98187 0.90087 0.91719 0.95670 0.92802 0.93238 0.91900 0.90113 0.90387 0.86314 0.87063 0.91275 0.92476 0.92236 0.99195 0.95496 0.95378 0.94282 0.93201 0.94009 0.80581 0.80710 0.80654 0.85680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.08 71.98 0.65 -2.41 16 2 C -0.08 -1.59 2.02 -10.79 -0.02 -1.61 16 3 C -0.13 -1.88 8.87 71.98 0.64 -1.24 16 4 C -0.05 -0.92 1.27 -12.28 -0.02 -0.94 16 5 H 0.14 1.69 5.76 -2.39 -0.01 1.68 16 6 C 0.51 15.99 5.32 87.65 0.47 16.46 16 7 O -0.59 -24.53 14.92 -3.03 -0.05 -24.57 16 8 N -0.60 -18.07 2.97 -818.94 -2.43 -20.50 16 9 C 0.10 1.84 6.30 86.36 0.54 2.39 16 10 C -0.12 -2.30 6.08 30.67 0.19 -2.12 16 11 C -0.12 -3.75 5.13 30.62 0.16 -3.59 16 12 C 0.17 6.93 2.74 45.07 0.12 7.05 16 13 H 0.05 2.08 7.88 -2.39 -0.02 2.06 16 14 N -0.61 -31.41 2.82 -702.35 -1.98 -33.40 16 15 C 0.19 9.45 7.88 127.77 1.01 10.46 16 16 C -0.27 -15.07 9.59 84.03 0.81 -14.27 16 17 H 0.07 3.82 7.81 -2.91 -0.02 3.80 16 18 C -0.05 -2.85 5.39 84.86 0.46 -2.39 16 19 N -0.94 -57.04 10.10 21.65 0.22 -56.82 16 20 Si 0.97 46.65 29.56 68.60 2.03 48.67 16 21 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 22 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 24 C 0.12 4.66 5.77 86.36 0.50 5.16 16 25 C -0.12 -2.39 3.29 -19.77 -0.07 -2.45 16 26 C -0.06 -0.71 9.67 22.47 0.22 -0.49 16 27 C -0.16 -1.69 10.11 22.36 0.23 -1.47 16 28 C 0.08 1.34 11.18 84.69 0.95 2.28 16 29 N -0.52 -13.14 10.36 -195.84 -2.03 -15.17 16 30 C 0.09 2.32 10.02 84.67 0.85 3.17 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.02 0.70 7.08 -2.38 -0.02 0.68 16 34 H 0.05 1.45 7.15 -2.39 -0.02 1.44 16 35 H 0.05 0.76 7.06 -2.39 -0.02 0.74 16 36 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.08 0.75 8.14 -2.39 -0.02 0.74 16 38 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.12 1.24 5.22 -2.39 -0.01 1.23 16 40 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.06 1.80 6.71 -2.39 -0.02 1.78 16 44 H -0.01 -0.59 7.48 -2.38 -0.02 -0.61 16 45 H 0.03 1.15 6.45 -2.39 -0.02 1.14 16 46 H 0.03 1.55 6.97 -2.39 -0.02 1.53 16 47 H 0.25 14.68 8.31 -92.70 -0.77 13.91 16 48 H 0.05 2.07 7.52 -2.39 -0.02 2.05 16 49 H 0.04 2.07 7.05 -2.39 -0.02 2.05 16 50 H 0.18 0.55 8.00 -2.91 -0.02 0.53 16 51 H 0.18 0.51 8.06 -2.91 -0.02 0.49 16 52 H 0.18 1.93 8.06 -2.91 -0.02 1.90 16 53 H 0.13 3.97 7.21 -2.91 -0.02 3.95 16 Total: -1.00 -79.99 406.69 4.31 -75.68 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.88 Total: 12.14 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 7.68 Total: 13.97 kcal Atomic # 7 Polarization: -119.66 SS G_CDS: -6.23 Total: -125.89 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.05 Total: -24.57 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.67 kcal Total: -79.99 4.31 -75.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027632097.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.007 kcal (2) G-P(sol) polarization free energy of solvation -79.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds