Wall clock time and date at job start Wed Apr 1 2020 03:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.46883 * 2 1 4 4 C 1.52999 * 109.47093 * 119.99974 * 2 1 3 5 5 H 1.09003 * 109.46860 * 295.52120 * 4 2 1 6 6 C 1.50700 * 109.47013 * 175.51827 * 4 2 1 7 7 O 1.21279 * 119.99973 * 336.06346 * 6 4 2 8 8 N 1.34772 * 119.99893 * 156.06449 * 6 4 2 9 9 C 1.46924 * 120.63041 * 355.05715 * 8 6 4 10 10 C 1.53195 * 108.77565 * 126.41499 * 9 8 6 11 11 C 1.53037 * 109.31508 * 54.63538 * 10 9 8 12 12 C 1.53047 * 109.53520 * 298.63316 * 11 10 9 13 13 H 1.09001 * 109.52275 * 301.40040 * 12 11 10 14 14 N 1.46497 * 109.49717 * 181.31468 * 12 11 10 15 15 C 1.46500 * 120.00413 * 300.16533 * 14 12 11 16 16 C 1.36944 * 119.99534 * 120.15895 * 14 12 11 17 17 H 1.07999 * 120.00087 * 22.40571 * 16 14 12 18 18 C 1.38817 * 119.99726 * 202.39441 * 16 14 12 19 19 N 1.31612 * 120.00010 * 10.81763 * 18 16 14 20 20 Si 1.86803 * 119.99689 * 190.82067 * 18 16 14 21 21 H 1.48496 * 109.47160 * 59.99984 * 20 18 16 22 22 H 1.48497 * 109.47056 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47019 * 299.99960 * 20 18 16 24 24 C 1.46930 * 120.63078 * 175.07642 * 8 6 4 25 25 C 1.50704 * 109.47081 * 55.51642 * 4 2 1 26 26 C 1.38668 * 120.41746 * 239.72137 * 25 4 2 27 27 C 1.38636 * 118.41974 * 179.78517 * 26 25 4 28 28 C 1.38222 * 119.15758 * 0.50976 * 27 26 25 29 29 N 1.31859 * 120.76415 * 359.73157 * 28 27 26 30 30 C 1.31883 * 121.72766 * 359.97438 * 29 28 27 31 31 H 1.08994 * 109.46847 * 300.00266 * 1 2 3 32 32 H 1.08999 * 109.46764 * 59.99965 * 1 2 3 33 33 H 1.08997 * 109.47041 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46856 * 240.00127 * 2 1 3 35 35 H 1.09003 * 109.47340 * 176.85165 * 3 2 1 36 36 H 1.09008 * 109.47346 * 296.84907 * 3 2 1 37 37 H 1.08998 * 109.47472 * 56.85019 * 3 2 1 38 38 H 1.09003 * 109.58832 * 246.20085 * 9 8 6 39 39 H 1.09001 * 109.58918 * 6.62323 * 9 8 6 40 40 H 1.09002 * 109.49784 * 174.58547 * 10 9 8 41 41 H 1.09004 * 109.49504 * 294.67874 * 10 9 8 42 42 H 1.08998 * 109.45884 * 178.61467 * 11 10 9 43 43 H 1.08994 * 109.45351 * 58.64472 * 11 10 9 44 44 H 1.09004 * 109.47107 * 94.39911 * 15 14 12 45 45 H 1.08996 * 109.46915 * 214.39916 * 15 14 12 46 46 H 1.08996 * 109.47092 * 334.40402 * 15 14 12 47 47 H 0.97006 * 119.99853 * 179.97438 * 19 18 16 48 48 H 1.08998 * 109.58303 * 353.37461 * 24 8 6 49 49 H 1.09001 * 109.58404 * 113.65821 * 24 8 6 50 50 H 1.08006 * 120.79210 * 0.02562 * 26 25 4 51 51 H 1.07991 * 120.41742 * 180.22210 * 27 26 25 52 52 H 1.08000 * 119.62194 * 179.70541 * 28 27 26 53 53 H 1.07998 * 119.61869 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.7437 -0.1631 2.1374 6 6 3.5430 -0.8181 1.1950 7 8 4.1154 -0.7724 0.1267 8 7 4.2509 -0.9556 2.3335 9 6 3.5829 -0.9042 3.6411 10 6 3.9530 -2.1620 4.4335 11 6 5.4767 -2.2818 4.5104 12 6 6.0516 -2.4141 3.0982 13 1 5.6230 -3.2899 2.6110 14 7 7.5073 -2.5602 3.1745 15 6 8.3178 -1.5076 3.7921 16 6 8.1103 -3.6808 2.6686 17 1 7.6086 -4.2710 1.9161 18 6 9.3667 -4.0579 3.1229 19 7 9.8870 -3.4727 4.1807 20 14 10.3188 -5.3960 2.2328 21 1 10.5550 -4.9832 0.8261 22 1 11.6220 -5.6113 2.9115 23 1 9.5361 -6.6578 2.2536 24 6 5.7054 -1.1592 2.2907 25 6 1.4491 -2.1064 1.3060 26 6 0.6679 -2.4928 2.3847 27 6 0.1413 -3.7752 2.3922 28 6 0.4192 -4.6235 1.3369 29 7 1.1705 -4.2235 0.3298 30 6 1.6832 -3.0092 0.2865 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 3.1285 1.4431 0.0564 36 1 1.7235 1.9398 -0.9169 37 1 1.6313 1.9724 0.8604 38 1 3.9127 -0.0193 4.1854 39 1 2.5029 -0.8667 3.4986 40 1 3.5424 -2.0914 5.4408 41 1 3.5437 -3.0402 3.9341 42 1 5.7427 -3.1626 5.0947 43 1 5.8872 -1.3920 4.9876 44 1 8.4900 -1.7499 4.8409 45 1 9.2741 -1.4346 3.2743 46 1 7.7922 -0.5554 3.7209 47 1 10.7647 -3.7365 4.4984 48 1 6.0257 -1.2898 1.2571 49 1 6.2083 -0.2939 2.7225 50 1 0.4712 -1.8096 3.1977 51 1 -0.4744 -4.1086 3.2144 52 1 0.0168 -5.6257 1.3374 53 1 2.2935 -2.7172 -0.5553 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027632099.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:09 Heat of formation + Delta-G solvation = -1.808188 kcal Electronic energy + Delta-G solvation = -32330.114442 eV Core-core repulsion = 28394.333826 eV Total energy + Delta-G solvation = -3935.780616 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.04612 -40.67500 -39.13448 -37.03029 -36.80118 -34.07340 -33.43584 -32.89112 -32.42233 -30.66974 -28.68458 -28.08332 -27.89383 -26.15292 -25.30015 -24.60399 -23.47934 -23.07211 -21.87928 -20.59072 -19.73502 -18.83898 -18.39674 -18.10362 -17.21810 -17.00775 -16.87735 -16.63735 -15.90912 -15.79109 -15.36865 -15.26870 -15.17460 -15.05990 -14.64975 -14.50034 -14.40466 -14.08785 -13.93034 -13.74932 -13.69614 -13.50519 -13.28673 -13.00736 -12.92463 -12.86210 -12.72856 -12.53001 -12.32820 -12.19112 -12.07440 -11.95018 -11.86674 -11.80738 -11.73431 -11.53965 -11.41150 -10.99962 -10.70409 -10.57873 -10.36307 -9.86145 -9.70419 -8.78758 -7.87136 -5.35486 0.12531 0.37426 1.40872 1.43366 1.50000 1.58595 1.96671 2.47001 2.84231 3.25567 3.44995 3.47730 3.59154 3.68705 3.73385 3.87890 3.97435 4.03912 4.07471 4.10910 4.14525 4.20744 4.23611 4.33738 4.41412 4.48588 4.61518 4.66216 4.70066 4.72438 4.75632 4.82550 4.83887 4.85992 4.89102 4.99160 5.01867 5.03493 5.12225 5.20883 5.25072 5.26762 5.27260 5.39262 5.42793 5.46077 5.47009 5.51639 5.59864 5.70684 5.79385 6.28519 6.46087 7.04957 7.11080 7.16817 7.82689 8.24355 9.14924 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.012710 B = 0.003327 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.477250 B = 8412.782122 C = 8997.728780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.076 4.076 3 C -0.145 4.145 4 C -0.047 4.047 5 H 0.137 0.863 6 C 0.515 3.485 7 O -0.581 6.581 8 N -0.604 5.604 9 C 0.102 3.898 10 C -0.120 4.120 11 C -0.122 4.122 12 C 0.171 3.829 13 H 0.034 0.966 14 N -0.611 5.611 15 C 0.183 3.817 16 C -0.269 4.269 17 H 0.056 0.944 18 C -0.044 4.044 19 N -0.933 5.933 20 Si 0.964 3.036 21 H -0.283 1.283 22 H -0.287 1.287 23 H -0.278 1.278 24 C 0.114 3.886 25 C -0.121 4.121 26 C -0.061 4.061 27 C -0.158 4.158 28 C 0.079 3.921 29 N -0.518 5.518 30 C 0.087 3.913 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.032 0.968 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.116 0.884 40 H 0.108 0.892 41 H 0.053 0.947 42 H 0.039 0.961 43 H 0.061 0.939 44 H 0.009 0.991 45 H 0.013 0.987 46 H 0.030 0.970 47 H 0.250 0.750 48 H 0.051 0.949 49 H 0.067 0.933 50 H 0.177 0.823 51 H 0.174 0.826 52 H 0.173 0.827 53 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.757 8.670 1.920 28.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.095 4.095 3 C -0.202 4.202 4 C -0.068 4.068 5 H 0.155 0.845 6 C 0.304 3.696 7 O -0.461 6.461 8 N -0.336 5.336 9 C -0.019 4.019 10 C -0.158 4.158 11 C -0.161 4.161 12 C 0.063 3.937 13 H 0.052 0.948 14 N -0.333 5.333 15 C 0.038 3.962 16 C -0.399 4.399 17 H 0.074 0.926 18 C -0.240 4.240 19 N -0.579 5.579 20 Si 0.792 3.208 21 H -0.209 1.209 22 H -0.212 1.212 23 H -0.203 1.203 24 C -0.011 4.011 25 C -0.124 4.124 26 C -0.087 4.087 27 C -0.177 4.177 28 C -0.078 4.078 29 N -0.227 5.227 30 C -0.069 4.069 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.134 0.866 40 H 0.126 0.874 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.080 0.920 44 H 0.027 0.973 45 H 0.032 0.968 46 H 0.048 0.952 47 H 0.059 0.941 48 H 0.069 0.931 49 H 0.085 0.915 50 H 0.194 0.806 51 H 0.191 0.809 52 H 0.190 0.810 53 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -26.099 8.086 0.754 27.333 hybrid contribution 1.582 -0.614 -0.221 1.711 sum -24.517 7.472 0.534 25.636 Atomic orbital electron populations 1.21770 0.92464 1.01723 1.03296 1.20964 0.97094 0.96103 0.95358 1.21829 1.00123 0.95137 1.03131 1.20419 0.88727 0.94300 1.03371 0.84494 1.21093 0.90512 0.74962 0.82993 1.90676 1.72873 1.51878 1.30676 1.48253 1.07350 1.70608 1.07360 1.22161 0.98904 0.98987 0.81871 1.21859 0.94222 0.97797 1.01944 1.21921 0.96336 1.01142 0.96717 1.20656 0.83412 0.94657 0.94989 0.94764 1.44072 1.01010 1.18951 1.69314 1.20489 0.92514 0.87396 0.95803 1.19399 1.01135 1.03515 1.15872 0.92583 1.25669 0.99846 1.00988 0.97469 1.70196 1.17653 1.45522 1.24516 0.85393 0.77931 0.79463 0.77973 1.20925 1.21229 1.20340 1.21873 0.80261 0.98588 1.00353 1.20350 1.00168 0.95286 0.96584 1.21929 0.93156 0.96992 0.96629 1.22518 1.00888 0.94087 1.00220 1.23312 0.93665 1.01239 0.89594 1.67651 1.10010 1.17061 1.28023 1.22471 0.96875 0.89379 0.98184 0.90188 0.91907 0.93480 0.92835 0.94897 0.91761 0.90352 0.89207 0.86566 0.87379 0.92798 0.94165 0.91991 0.97308 0.96775 0.95206 0.94079 0.93068 0.91481 0.80563 0.80881 0.80974 0.85752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.88 71.98 0.64 -1.15 16 2 C -0.08 -1.45 1.94 -10.79 -0.02 -1.47 16 3 C -0.14 -2.62 9.01 71.98 0.65 -1.97 16 4 C -0.05 -0.88 1.19 -12.28 -0.01 -0.90 16 5 H 0.14 1.53 6.11 -2.39 -0.01 1.51 16 6 C 0.52 15.05 5.66 87.66 0.50 15.54 16 7 O -0.58 -22.57 14.65 -3.03 -0.04 -22.61 16 8 N -0.60 -17.16 2.97 -818.90 -2.43 -19.60 16 9 C 0.10 1.87 6.27 86.36 0.54 2.41 16 10 C -0.12 -2.62 6.08 30.67 0.19 -2.43 16 11 C -0.12 -4.10 5.14 30.62 0.16 -3.94 16 12 C 0.17 7.20 2.74 45.07 0.12 7.32 16 13 H 0.03 1.61 7.86 -2.39 -0.02 1.59 16 14 N -0.61 -31.74 2.82 -702.33 -1.98 -33.72 16 15 C 0.18 9.16 8.02 127.77 1.02 10.18 16 16 C -0.27 -15.66 9.61 84.03 0.81 -14.85 16 17 H 0.06 3.30 7.81 -2.91 -0.02 3.28 16 18 C -0.04 -2.56 5.14 84.86 0.44 -2.13 16 19 N -0.93 -55.89 10.56 21.65 0.23 -55.66 16 20 Si 0.96 47.08 29.57 68.60 2.03 49.11 16 21 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 22 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 23 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 24 C 0.11 4.30 5.77 86.36 0.50 4.80 16 25 C -0.12 -2.36 3.22 -19.77 -0.06 -2.43 16 26 C -0.06 -0.77 9.19 22.47 0.21 -0.56 16 27 C -0.16 -1.99 10.11 22.36 0.23 -1.76 16 28 C 0.08 1.49 11.18 84.68 0.95 2.44 16 29 N -0.52 -14.11 10.36 -195.85 -2.03 -16.14 16 30 C 0.09 2.36 10.04 84.67 0.85 3.21 16 31 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 33 H 0.05 0.71 7.08 -2.39 -0.02 0.69 16 34 H 0.05 1.36 7.14 -2.39 -0.02 1.34 16 35 H 0.03 0.80 6.72 -2.39 -0.02 0.78 16 36 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.12 1.24 4.43 -2.39 -0.01 1.23 16 40 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.05 1.30 8.14 -2.38 -0.02 1.29 16 42 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.06 2.03 7.71 -2.39 -0.02 2.02 16 44 H 0.01 0.47 7.41 -2.38 -0.02 0.45 16 45 H 0.01 0.76 7.19 -2.39 -0.02 0.74 16 46 H 0.03 1.26 6.36 -2.39 -0.02 1.25 16 47 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 48 H 0.05 2.31 7.04 -2.39 -0.02 2.29 16 49 H 0.07 2.45 6.50 -2.39 -0.02 2.44 16 50 H 0.18 0.70 7.65 -2.91 -0.02 0.68 16 51 H 0.17 0.88 8.06 -2.92 -0.02 0.85 16 52 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 53 H 0.12 3.96 7.64 -2.91 -0.02 3.94 16 Total: -1.00 -78.70 405.67 4.35 -74.36 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 0.89 Total: 11.93 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: 7.69 Total: 12.33 kcal Atomic # 7 Polarization: -118.90 SS G_CDS: -6.21 Total: -125.12 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.04 Total: -22.61 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -78.70 4.35 -74.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027632099.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.550 kcal (2) G-P(sol) polarization free energy of solvation -78.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds