Wall clock time and date at job start Wed Apr 1 2020 04:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46932 * 2 1 4 4 N 1.46497 * 109.47205 * 119.99971 * 2 1 3 5 5 C 1.46508 * 120.00041 * 299.54850 * 4 2 1 6 6 C 1.39038 * 120.00176 * 119.54666 * 4 2 1 7 7 C 1.39225 * 119.92870 * 5.46166 * 6 4 2 8 8 C 1.37612 * 120.06469 * 179.72516 * 7 6 4 9 9 C 1.39794 * 119.93212 * 0.54350 * 8 7 6 10 10 C 1.47521 * 120.06826 * 179.69941 * 9 8 7 11 11 O 1.21589 * 119.99966 * 180.02562 * 10 9 8 12 12 N 1.34772 * 120.00037 * 0.03251 * 10 9 8 13 13 C 1.46505 * 120.00389 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.47310 * 186.64690 * 13 12 10 15 15 H 1.08998 * 109.87247 * 299.56824 * 14 13 12 16 16 C 1.54320 * 109.88230 * 178.55300 * 14 13 12 17 17 C 1.55405 * 102.82931 * 218.48063 * 16 14 13 18 18 C 1.54913 * 101.66552 * 35.33817 * 17 16 14 19 19 N 1.47019 * 109.88449 * 60.58473 * 14 13 12 20 20 C 1.36945 * 125.64695 * 298.32057 * 19 14 13 21 21 H 1.08002 * 120.00057 * 330.94504 * 20 19 14 22 22 C 1.38816 * 119.99875 * 150.94643 * 20 19 14 23 23 N 1.31615 * 119.99825 * 165.67376 * 22 20 19 24 24 Si 1.86799 * 120.00036 * 345.67539 * 22 20 19 25 25 H 1.48505 * 109.47326 * 85.38212 * 24 22 20 26 26 H 1.48500 * 109.47231 * 205.38002 * 24 22 20 27 27 H 1.48506 * 109.47060 * 325.38122 * 24 22 20 28 28 C 1.39794 * 119.86097 * 359.73300 * 9 8 7 29 29 C 1.37609 * 119.93391 * 359.97438 * 28 9 8 30 30 H 1.08998 * 109.46685 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47117 * 299.99993 * 1 2 3 32 32 H 1.08997 * 109.46664 * 60.00025 * 1 2 3 33 33 H 1.08994 * 109.47117 * 240.00006 * 2 1 3 34 34 H 1.09002 * 109.47156 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47334 * 300.00055 * 3 2 1 36 36 H 1.09000 * 109.47298 * 60.00505 * 3 2 1 37 37 H 1.08992 * 109.46976 * 89.99685 * 5 4 2 38 38 H 1.08996 * 109.46734 * 330.00026 * 5 4 2 39 39 H 1.09000 * 109.47174 * 209.99782 * 5 4 2 40 40 H 1.07989 * 119.96436 * 359.97438 * 7 6 4 41 41 H 1.08005 * 120.03263 * 180.29959 * 8 7 6 42 42 H 0.97001 * 120.00236 * 359.97438 * 12 10 9 43 43 H 1.09005 * 109.46522 * 306.64570 * 13 12 10 44 44 H 1.08999 * 109.46843 * 66.64480 * 13 12 10 45 45 H 1.09008 * 110.71870 * 336.75188 * 16 14 13 46 46 H 1.08999 * 110.72319 * 100.02706 * 16 14 13 47 47 H 1.08994 * 110.89201 * 277.26342 * 17 16 14 48 48 H 1.08999 * 111.06807 * 153.48060 * 17 16 14 49 49 H 1.08994 * 110.36528 * 204.23698 * 18 17 16 50 50 H 1.08995 * 110.36973 * 81.90985 * 18 17 16 51 51 H 0.97004 * 119.99927 * 180.02562 * 23 22 20 52 52 H 1.08008 * 120.03039 * 179.97438 * 28 9 8 53 53 H 1.07998 * 119.96256 * 179.97438 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6727 -0.1843 2.5268 6 6 2.8100 -1.8265 1.0686 7 6 3.2321 -2.2411 -0.1916 8 6 4.0203 -3.3617 -0.3206 9 6 4.3876 -4.0905 0.8144 10 6 5.2270 -5.2961 0.6790 11 8 5.5454 -5.9293 1.6670 12 7 5.6411 -5.6955 -0.5397 13 6 6.4751 -6.8925 -0.6742 14 6 6.9399 -7.0298 -2.1253 15 1 6.0764 -7.1250 -2.7836 16 6 7.8494 -8.2681 -2.2702 17 6 8.9378 -7.7822 -3.2673 18 6 9.0964 -6.2964 -2.8583 19 7 7.7341 -5.8537 -2.5095 20 6 7.2829 -4.5610 -2.5391 21 1 6.2402 -4.3573 -2.7329 22 6 8.1659 -3.5125 -2.3200 23 7 7.8126 -2.2809 -2.6209 24 14 9.8555 -3.8497 -1.5981 25 1 10.7956 -4.2151 -2.6881 26 1 10.3498 -2.6326 -0.9056 27 1 9.7644 -4.9693 -0.6268 28 6 3.9573 -3.6749 2.0779 29 6 3.1743 -2.5500 2.2009 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 0.7441 -0.6466 2.8614 38 1 1.5445 0.8972 2.4820 39 1 2.4722 -0.4268 3.2268 40 1 2.9440 -1.6804 -1.0684 41 1 4.3515 -3.6801 -1.2980 42 1 5.3868 -5.1906 -1.3280 43 1 7.3435 -6.8053 -0.0212 44 1 5.8961 -7.7722 -0.3933 45 1 8.2957 -8.5330 -1.3116 46 1 7.2927 -9.1093 -2.6832 47 1 8.5890 -7.8691 -4.2962 48 1 9.8706 -8.3279 -3.1257 49 1 9.4829 -5.7123 -3.6934 50 1 9.7563 -6.2088 -1.9953 51 1 8.4298 -1.5483 -2.4682 52 1 4.2392 -4.2361 2.9566 53 1 2.8413 -2.2287 3.1767 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028346676.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:33 Heat of formation + Delta-G solvation = 6.079869 kcal Electronic energy + Delta-G solvation = -31193.290955 eV Core-core repulsion = 27257.852391 eV Total energy + Delta-G solvation = -3935.438564 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.23690 -40.27388 -39.36345 -37.72750 -35.47363 -34.62157 -33.72181 -31.99637 -31.77713 -31.38488 -30.04894 -28.06984 -27.50644 -26.56377 -25.61276 -23.95343 -23.23653 -22.50636 -21.41798 -21.18178 -20.40380 -19.38715 -18.70307 -17.85839 -17.34747 -17.13834 -16.93240 -16.32373 -15.94929 -15.85482 -15.62523 -15.27470 -15.16153 -14.92400 -14.86080 -14.54854 -14.40690 -14.29061 -14.14148 -13.84171 -13.43837 -13.39487 -13.39079 -13.05334 -12.99830 -12.86249 -12.77574 -12.70216 -12.65958 -12.27761 -12.21019 -12.03224 -11.92383 -11.80017 -11.63576 -11.45472 -11.27353 -10.84110 -10.81205 -10.78508 -9.95681 -9.86826 -8.89473 -8.24217 -8.15507 -5.47907 0.12499 0.51092 1.24502 1.35813 1.41482 2.00372 2.11566 2.38986 2.48479 3.03212 3.17896 3.29327 3.71876 3.85009 3.88643 3.97155 4.03121 4.04787 4.16545 4.18170 4.28840 4.31430 4.34086 4.42790 4.47412 4.53199 4.65695 4.68059 4.70987 4.74905 4.75248 4.79516 4.82605 4.88509 4.96296 4.99781 5.02268 5.03579 5.09057 5.16062 5.24223 5.27141 5.29106 5.36654 5.42730 5.49323 5.53927 5.66184 5.77651 5.81477 6.13587 6.33684 6.48759 6.73874 6.79976 7.37179 7.57141 8.18721 9.03076 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.013475 B = 0.003086 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.394858 B = 9071.153085 C =10005.318475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.127 3.873 3 C -0.160 4.160 4 N -0.618 5.618 5 C 0.083 3.917 6 C 0.245 3.755 7 C -0.214 4.214 8 C -0.027 4.027 9 C -0.222 4.222 10 C 0.552 3.448 11 O -0.603 6.603 12 N -0.701 5.701 13 C 0.117 3.883 14 C 0.141 3.859 15 H 0.060 0.940 16 C -0.114 4.114 17 C -0.116 4.116 18 C 0.096 3.904 19 N -0.619 5.619 20 C -0.212 4.212 21 H 0.073 0.927 22 C -0.016 4.016 23 N -0.944 5.944 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.319 1.319 27 H -0.281 1.281 28 C -0.020 4.020 29 C -0.210 4.210 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.041 0.959 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.138 0.862 41 H 0.117 0.883 42 H 0.408 0.592 43 H 0.033 0.967 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.107 0.893 47 H 0.082 0.918 48 H 0.092 0.908 49 H 0.040 0.960 50 H 0.011 0.989 51 H 0.258 0.742 52 H 0.128 0.872 53 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.325 0.986 4.450 15.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.024 3.976 3 C -0.218 4.218 4 N -0.326 5.326 5 C -0.059 4.059 6 C 0.140 3.860 7 C -0.237 4.237 8 C -0.047 4.047 9 C -0.227 4.227 10 C 0.342 3.658 11 O -0.488 6.488 12 N -0.352 5.352 13 C -0.009 4.009 14 C 0.035 3.965 15 H 0.078 0.922 16 C -0.152 4.152 17 C -0.154 4.154 18 C -0.028 4.028 19 N -0.345 5.345 20 C -0.341 4.341 21 H 0.090 0.910 22 C -0.212 4.212 23 N -0.591 5.591 24 Si 0.763 3.237 25 H -0.200 1.200 26 H -0.249 1.249 27 H -0.208 1.208 28 C -0.039 4.039 29 C -0.232 4.232 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.060 0.940 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.104 0.896 39 H 0.088 0.912 40 H 0.156 0.844 41 H 0.135 0.865 42 H 0.247 0.753 43 H 0.051 0.949 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.126 0.874 47 H 0.101 0.899 48 H 0.111 0.889 49 H 0.058 0.942 50 H 0.028 0.972 51 H 0.067 0.933 52 H 0.146 0.854 53 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -14.210 0.961 5.094 15.126 hybrid contribution 1.361 0.638 0.089 1.505 sum -12.849 1.598 5.183 13.947 Atomic orbital electron populations 1.22097 0.93430 1.02180 1.03422 1.21303 0.95228 0.93394 0.87713 1.22152 1.00759 0.95363 1.03529 1.46726 1.52552 1.26068 1.07224 1.21838 1.01016 1.00455 0.82619 1.18069 0.88224 0.86396 0.93358 1.20747 1.05666 1.00248 0.96991 1.21080 0.92870 0.93390 0.97318 1.19662 1.07877 0.99525 0.95626 1.18604 0.79621 0.84529 0.83023 1.90624 1.60962 1.58559 1.38628 1.46020 1.51107 1.29327 1.08778 1.21904 0.93226 0.86839 0.98881 1.21578 0.95237 0.88207 0.91528 0.92176 1.22604 0.96560 0.95996 1.00052 1.22711 0.99787 0.93085 0.99823 1.22112 0.87487 0.96677 0.96540 1.45019 1.09168 1.02857 1.77477 1.18374 0.95302 0.80332 1.40132 0.90973 1.25593 1.00395 0.95014 1.00239 1.69828 1.37372 0.99423 1.52444 0.86181 0.83407 0.74794 0.79278 1.19969 1.24854 1.20758 1.21009 0.92587 0.94564 0.95779 1.20750 1.06229 0.97746 0.98463 0.93152 0.91347 0.90157 0.89815 0.94028 0.90073 0.91045 0.92015 0.89636 0.91151 0.84424 0.86545 0.75277 0.94898 0.90852 0.90972 0.87429 0.89929 0.88931 0.94190 0.97182 0.93322 0.85425 0.82987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.20 71.98 0.66 -1.38 16 2 C 0.13 2.26 3.18 44.99 0.14 2.40 16 3 C -0.16 -2.52 9.16 71.98 0.66 -1.86 16 4 N -0.62 -12.78 2.88 -698.10 -2.01 -14.79 16 5 C 0.08 1.20 9.11 127.77 1.16 2.36 16 6 C 0.25 6.79 6.54 38.47 0.25 7.04 16 7 C -0.21 -6.78 9.27 22.36 0.21 -6.57 16 8 C -0.03 -1.00 9.53 22.50 0.21 -0.78 16 9 C -0.22 -8.75 5.88 -20.08 -0.12 -8.87 16 10 C 0.55 24.55 7.76 86.69 0.67 25.22 16 11 O -0.60 -29.54 16.32 -4.00 -0.07 -29.61 16 12 N -0.70 -29.67 4.74 -466.28 -2.21 -31.88 16 13 C 0.12 4.58 5.20 86.38 0.45 5.03 16 14 C 0.14 5.06 3.35 45.34 0.15 5.21 16 15 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 16 C -0.11 -3.11 6.50 31.87 0.21 -2.90 16 17 C -0.12 -3.33 7.09 32.08 0.23 -3.10 16 18 C 0.10 3.96 4.78 86.86 0.42 4.37 16 19 N -0.62 -27.88 2.82 -668.28 -1.89 -29.76 16 20 C -0.21 -11.23 8.66 84.03 0.73 -10.51 16 21 H 0.07 3.96 6.81 -2.91 -0.02 3.94 16 22 C -0.02 -0.94 5.48 84.86 0.46 -0.48 16 23 N -0.94 -57.32 13.97 21.65 0.30 -57.01 16 24 Si 0.93 48.69 24.36 68.60 1.67 50.36 16 25 H -0.27 -13.47 6.88 99.48 0.68 -12.79 16 26 H -0.32 -17.28 7.11 99.48 0.71 -16.58 16 27 H -0.28 -14.90 6.45 99.48 0.64 -14.26 16 28 C -0.02 -0.67 9.58 22.50 0.22 -0.46 16 29 C -0.21 -5.84 9.13 22.36 0.20 -5.64 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.76 7.68 -2.39 -0.02 0.74 16 32 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.08 1.71 5.29 -2.39 -0.01 1.70 16 34 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 0.91 6.65 -2.39 -0.02 0.89 16 37 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.09 0.95 6.40 -2.39 -0.02 0.93 16 39 H 0.07 1.03 6.43 -2.39 -0.02 1.02 16 40 H 0.14 3.92 5.73 -2.92 -0.02 3.91 16 41 H 0.12 4.51 6.39 -2.91 -0.02 4.49 16 42 H 0.41 17.28 3.98 -92.71 -0.37 16.91 16 43 H 0.03 1.47 8.11 -2.38 -0.02 1.45 16 44 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 45 H 0.07 1.94 7.85 -2.38 -0.02 1.93 16 46 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 47 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 48 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 49 H 0.04 1.75 7.35 -2.39 -0.02 1.73 16 50 H 0.01 0.47 5.10 -2.39 -0.01 0.45 16 51 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 52 H 0.13 4.33 7.64 -2.91 -0.02 4.31 16 53 H 0.15 3.24 6.28 -2.91 -0.02 3.22 16 Total: -1.00 -73.05 402.35 3.18 -69.87 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: 0.46 Total: 33.74 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: 6.92 Total: 9.09 kcal Atomic # 7 Polarization: -127.65 SS G_CDS: -5.80 Total: -133.45 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.07 Total: -29.61 kcal Atomic # 14 Polarization: 48.69 SS G_CDS: 1.67 Total: 50.36 kcal Total: -73.05 3.18 -69.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028346676.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.947 kcal (2) G-P(sol) polarization free energy of solvation -73.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds