Wall clock time and date at job start Wed Apr 1 2020 04:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46633 * 2 1 4 4 N 1.46493 * 109.47003 * 120.00079 * 2 1 3 5 5 C 1.46501 * 120.00030 * 296.08298 * 4 2 1 6 6 C 1.39040 * 120.00072 * 116.08944 * 4 2 1 7 7 C 1.39222 * 119.93128 * 5.05367 * 6 4 2 8 8 C 1.37609 * 120.07077 * 179.72637 * 7 6 4 9 9 C 1.39788 * 119.92614 * 0.55400 * 8 7 6 10 10 C 1.47530 * 120.06497 * 179.70100 * 9 8 7 11 11 O 1.21600 * 119.99605 * 180.02562 * 10 9 8 12 12 N 1.34776 * 119.99990 * 0.02562 * 10 9 8 13 13 C 1.46501 * 119.99733 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.46859 * 185.04656 * 13 12 10 15 15 H 1.08993 * 109.87435 * 304.58159 * 14 13 12 16 16 C 1.54330 * 109.87718 * 65.59616 * 14 13 12 17 17 C 1.55160 * 102.93985 * 141.60932 * 16 14 13 18 18 C 1.54909 * 101.57919 * 324.49588 * 17 16 14 19 19 N 1.47014 * 109.88125 * 183.56004 * 14 13 12 20 20 C 1.36942 * 125.65064 * 61.61248 * 19 14 13 21 21 H 1.08000 * 119.99139 * 8.82029 * 20 19 14 22 22 C 1.38803 * 120.00496 * 188.82064 * 20 19 14 23 23 N 1.31620 * 119.99972 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00337 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46666 * 60.00148 * 24 22 20 26 26 H 1.48499 * 109.47231 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47216 * 300.00177 * 24 22 20 28 28 C 1.39792 * 119.86811 * 359.72095 * 9 8 7 29 29 C 1.37602 * 119.92859 * 0.02562 * 28 9 8 30 30 H 1.09002 * 109.46956 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47415 * 299.99927 * 1 2 3 32 32 H 1.09000 * 109.47390 * 59.99821 * 1 2 3 33 33 H 1.08998 * 109.47115 * 240.00730 * 2 1 3 34 34 H 1.08996 * 109.46777 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47378 * 300.00185 * 3 2 1 36 36 H 1.08994 * 109.47058 * 60.00104 * 3 2 1 37 37 H 1.08998 * 109.47425 * 90.00611 * 5 4 2 38 38 H 1.09006 * 109.47031 * 210.00217 * 5 4 2 39 39 H 1.09001 * 109.47180 * 329.99705 * 5 4 2 40 40 H 1.08000 * 119.96401 * 359.97438 * 7 6 4 41 41 H 1.08000 * 120.03611 * 180.25109 * 8 7 6 42 42 H 0.96992 * 119.99962 * 359.97438 * 12 10 9 43 43 H 1.08996 * 109.47333 * 305.04919 * 13 12 10 44 44 H 1.09000 * 109.46920 * 65.05191 * 13 12 10 45 45 H 1.08995 * 110.71592 * 259.97043 * 16 14 13 46 46 H 1.09006 * 110.72058 * 23.06779 * 16 14 13 47 47 H 1.09000 * 111.00473 * 82.57024 * 17 16 14 48 48 H 1.08995 * 111.00280 * 206.42595 * 17 16 14 49 49 H 1.09003 * 110.36289 * 155.85240 * 18 17 16 50 50 H 1.09000 * 110.36661 * 278.05676 * 18 17 16 51 51 H 0.97004 * 120.00144 * 179.97438 * 23 22 20 52 52 H 1.07999 * 120.03609 * 179.97438 * 28 9 8 53 53 H 1.08004 * 119.97004 * 180.02562 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7365 -0.1420 2.5250 6 6 2.7493 -1.8666 1.0702 7 6 3.1067 -2.3305 -0.1929 8 6 3.8350 -3.4910 -0.3206 9 6 4.2059 -4.2106 0.8190 10 6 4.9810 -5.4587 0.6853 11 8 5.3026 -6.0838 1.6775 12 7 5.3326 -5.9060 -0.5365 13 6 6.1028 -7.1451 -0.6692 14 6 6.4756 -7.3591 -2.1376 15 1 5.5763 -7.3496 -2.7533 16 6 7.4409 -6.2478 -2.6012 17 6 8.4293 -7.0088 -3.5239 18 6 8.5358 -8.3766 -2.8046 19 7 7.1752 -8.6426 -2.2939 20 6 6.6522 -9.8763 -2.0113 21 1 5.6028 -9.9769 -1.7767 22 6 7.4707 -10.9972 -2.0265 23 7 8.7497 -10.8743 -2.3119 24 14 6.7574 -12.6799 -1.6403 25 1 5.6900 -13.0019 -2.6212 26 1 7.8303 -13.7033 -1.7233 27 1 6.1849 -12.6723 -0.2702 28 6 3.8406 -3.7453 2.0856 29 6 3.1168 -2.5813 2.2070 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 3.1298 1.4426 0.0005 35 1 1.6765 1.9564 -0.8900 36 1 1.6765 1.9563 0.8899 37 1 0.7965 -0.5512 2.8952 38 1 2.5432 -0.4103 3.2073 39 1 1.6604 0.9434 2.4613 40 1 2.8156 -1.7767 -1.0732 41 1 4.1154 -3.8482 -1.3005 42 1 5.0757 -5.4075 -1.3278 43 1 7.0108 -7.0745 -0.0704 44 1 5.5022 -7.9853 -0.3207 45 1 6.9054 -5.4801 -3.1596 46 1 7.9627 -5.8103 -1.7500 47 1 8.0172 -7.1255 -4.5262 48 1 9.3971 -6.5084 -3.5569 49 1 8.8339 -9.1533 -3.5088 50 1 9.2483 -8.3180 -1.9817 51 1 9.3218 -11.6576 -2.3221 52 1 4.1254 -4.2992 2.9679 53 1 2.8346 -2.2210 3.1853 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028346677.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:38 Heat of formation + Delta-G solvation = 3.288857 kcal Electronic energy + Delta-G solvation = -29932.061434 eV Core-core repulsion = 25996.501842 eV Total energy + Delta-G solvation = -3935.559591 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.28512 -40.26240 -39.22449 -37.74477 -35.78436 -34.41904 -33.70475 -32.00488 -31.57756 -31.00058 -29.77886 -28.06075 -27.48729 -26.70456 -25.67907 -23.92343 -23.22376 -22.03750 -21.57154 -21.21635 -20.48499 -19.35438 -18.66398 -17.91295 -17.45906 -16.86250 -16.38935 -16.27606 -16.06948 -15.71599 -15.68068 -15.61809 -15.09916 -14.90376 -14.66553 -14.45370 -14.39822 -13.93010 -13.84824 -13.63477 -13.52083 -13.46089 -13.32139 -13.09565 -12.97028 -12.88742 -12.80847 -12.69798 -12.64315 -12.18084 -12.06429 -11.91788 -11.83465 -11.71190 -11.45088 -11.43039 -11.39428 -10.96147 -10.83356 -10.69475 -10.06635 -9.96355 -8.89524 -8.25678 -7.84643 -5.23056 0.09663 0.50641 1.43852 1.47735 1.53237 1.96776 2.11265 2.22199 2.51341 3.00671 3.31586 3.69779 3.73197 3.84843 3.92915 3.99263 4.01891 4.04813 4.18040 4.26197 4.30464 4.33507 4.42138 4.46047 4.52712 4.56145 4.65347 4.70155 4.73707 4.76983 4.81557 4.89245 4.96400 4.99277 4.99509 5.00310 5.10515 5.15366 5.22408 5.26516 5.29660 5.37463 5.38435 5.40833 5.48513 5.53087 5.58406 5.68816 5.78243 5.80343 6.24929 6.32162 6.49213 6.65439 7.09421 7.32068 7.76929 8.41649 9.23478 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.019120 B = 0.001992 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.068696 B =14051.554813 C =14684.281148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.129 3.871 3 C -0.160 4.160 4 N -0.617 5.617 5 C 0.080 3.920 6 C 0.244 3.756 7 C -0.210 4.210 8 C -0.027 4.027 9 C -0.219 4.219 10 C 0.552 3.448 11 O -0.603 6.603 12 N -0.705 5.705 13 C 0.130 3.870 14 C 0.148 3.852 15 H 0.053 0.947 16 C -0.113 4.113 17 C -0.132 4.132 18 C 0.166 3.834 19 N -0.612 5.612 20 C -0.237 4.237 21 H 0.077 0.923 22 C -0.064 4.064 23 N -0.947 5.947 24 Si 0.974 3.026 25 H -0.273 1.273 26 H -0.292 1.292 27 H -0.285 1.285 28 C -0.023 4.023 29 C -0.212 4.212 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.052 0.948 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.154 0.846 41 H 0.147 0.853 42 H 0.413 0.587 43 H 0.034 0.966 44 H 0.031 0.969 45 H 0.106 0.894 46 H 0.062 0.938 47 H 0.072 0.928 48 H 0.082 0.918 49 H 0.050 0.950 50 H -0.014 1.014 51 H 0.247 0.753 52 H 0.116 0.884 53 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.792 30.780 1.856 35.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.027 3.973 3 C -0.218 4.218 4 N -0.324 5.324 5 C -0.062 4.062 6 C 0.138 3.862 7 C -0.232 4.232 8 C -0.046 4.046 9 C -0.224 4.224 10 C 0.343 3.657 11 O -0.486 6.486 12 N -0.357 5.357 13 C 0.003 3.997 14 C 0.041 3.959 15 H 0.071 0.929 16 C -0.150 4.150 17 C -0.171 4.171 18 C 0.041 3.959 19 N -0.336 5.336 20 C -0.366 4.366 21 H 0.095 0.905 22 C -0.257 4.257 23 N -0.595 5.595 24 Si 0.802 3.198 25 H -0.198 1.198 26 H -0.218 1.218 27 H -0.211 1.211 28 C -0.043 4.043 29 C -0.234 4.234 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.071 0.929 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.171 0.829 41 H 0.165 0.835 42 H 0.251 0.749 43 H 0.053 0.947 44 H 0.049 0.951 45 H 0.125 0.875 46 H 0.081 0.919 47 H 0.090 0.910 48 H 0.101 0.899 49 H 0.069 0.931 50 H 0.004 0.996 51 H 0.057 0.943 52 H 0.134 0.866 53 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -16.608 30.302 2.540 34.648 hybrid contribution 0.084 -1.578 0.502 1.658 sum -16.523 28.724 3.042 33.277 Atomic orbital electron populations 1.22151 0.94466 1.01975 1.03176 1.21327 0.94552 0.93661 0.87793 1.22151 1.01258 0.95022 1.03369 1.46761 1.55734 1.22707 1.07217 1.21824 1.01217 1.00069 0.83072 1.18166 0.88336 0.85843 0.93827 1.20867 1.06241 0.99521 0.96555 1.21224 0.93046 0.92891 0.97469 1.19524 1.09373 0.97683 0.95819 1.18840 0.78796 0.85283 0.82778 1.90731 1.58159 1.60634 1.39042 1.45713 1.55748 1.25830 1.08416 1.21689 0.93703 0.84913 0.99391 1.21330 0.95977 0.86938 0.91652 0.92922 1.22602 0.96858 0.96319 0.99268 1.22864 0.99802 0.95763 0.98631 1.21483 0.85139 0.94513 0.94757 1.44846 1.12451 1.00676 1.75634 1.19293 0.93454 0.84065 1.39811 0.90517 1.25627 0.96035 1.01639 1.02433 1.70131 1.04783 1.28795 1.55836 0.85226 0.77041 0.79444 0.78093 1.19836 1.21831 1.21113 1.20989 0.92734 0.94315 0.96272 1.20710 1.06947 0.97223 0.98566 0.93420 0.92093 0.90108 0.88486 0.92930 0.90026 0.91751 0.92763 0.91098 0.89550 0.82871 0.83541 0.74916 0.94706 0.95083 0.87530 0.91891 0.90968 0.89921 0.93117 0.99586 0.94347 0.86585 0.83982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 9.25 71.98 0.67 -0.38 16 2 C 0.13 1.00 3.19 44.99 0.14 1.14 16 3 C -0.16 -0.88 9.09 71.98 0.65 -0.22 16 4 N -0.62 -7.00 2.88 -698.10 -2.01 -9.01 16 5 C 0.08 0.64 9.26 127.77 1.18 1.82 16 6 C 0.24 4.04 6.54 38.47 0.25 4.29 16 7 C -0.21 -3.31 9.29 22.36 0.21 -3.11 16 8 C -0.03 -0.52 9.53 22.50 0.21 -0.30 16 9 C -0.22 -5.93 5.88 -20.08 -0.12 -6.05 16 10 C 0.55 19.60 7.76 86.69 0.67 20.28 16 11 O -0.60 -27.46 16.33 -4.03 -0.07 -27.53 16 12 N -0.70 -22.50 5.29 -466.26 -2.47 -24.97 16 13 C 0.13 5.35 5.08 86.38 0.44 5.79 16 14 C 0.15 5.88 3.20 45.35 0.15 6.02 16 15 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 16 C -0.11 -3.52 6.15 31.79 0.20 -3.33 16 17 C -0.13 -4.66 7.09 31.99 0.23 -4.43 16 18 C 0.17 8.26 5.57 86.79 0.48 8.74 16 19 N -0.61 -31.54 3.14 -667.46 -2.09 -33.63 16 20 C -0.24 -13.57 9.76 84.03 0.82 -12.75 16 21 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 22 C -0.06 -3.75 5.48 84.86 0.47 -3.29 16 23 N -0.95 -58.07 10.37 21.65 0.22 -57.84 16 24 Si 0.97 47.51 29.55 68.60 2.03 49.54 16 25 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 26 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 27 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 28 C -0.02 -0.60 9.58 22.50 0.22 -0.38 16 29 C -0.21 -4.11 9.14 22.36 0.20 -3.90 16 30 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.37 7.77 -2.39 -0.02 0.35 16 32 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.10 0.71 5.27 -2.39 -0.01 0.69 16 34 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.06 0.30 6.54 -2.39 -0.02 0.28 16 37 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.07 0.58 6.41 -2.38 -0.02 0.57 16 39 H 0.09 0.41 6.23 -2.39 -0.01 0.39 16 40 H 0.15 1.58 5.71 -2.91 -0.02 1.56 16 41 H 0.15 2.07 6.39 -2.91 -0.02 2.05 16 42 H 0.41 9.65 6.38 -92.71 -0.59 9.06 16 43 H 0.03 1.64 8.05 -2.39 -0.02 1.62 16 44 H 0.03 1.48 7.89 -2.39 -0.02 1.46 16 45 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 46 H 0.06 2.01 7.79 -2.38 -0.02 1.99 16 47 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 48 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 49 H 0.05 2.85 6.51 -2.39 -0.02 2.83 16 50 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 51 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 52 H 0.12 3.30 7.64 -2.91 -0.02 3.27 16 53 H 0.14 2.16 6.27 -2.91 -0.02 2.15 16 Total: -1.00 -78.41 412.14 3.00 -75.41 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.32 Total: 18.09 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 7.07 Total: 9.95 kcal Atomic # 7 Polarization: -119.11 SS G_CDS: -6.35 Total: -125.45 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.07 Total: -27.53 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.54 kcal Total: -78.41 3.00 -75.41 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028346677.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.699 kcal (2) G-P(sol) polarization free energy of solvation -78.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds