Wall clock time and date at job start Wed Apr 1 2020 04:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47129 * 2 1 4 4 N 1.46500 * 109.47182 * 239.99730 * 2 1 3 5 5 C 1.46497 * 119.99803 * 55.30811 * 4 2 1 6 6 C 1.39051 * 119.99954 * 235.30724 * 4 2 1 7 7 C 1.39211 * 119.93012 * 5.53044 * 6 4 2 8 8 C 1.37617 * 120.06912 * 179.76611 * 7 6 4 9 9 C 1.39798 * 119.92429 * 0.48442 * 8 7 6 10 10 C 1.47525 * 120.06776 * 179.78913 * 9 8 7 11 11 O 1.21590 * 120.00141 * 179.97438 * 10 9 8 12 12 N 1.34785 * 119.99605 * 359.97438 * 10 9 8 13 13 C 1.46499 * 119.99750 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47079 * 180.02562 * 13 12 10 15 15 H 1.08995 * 110.88995 * 302.57929 * 14 13 12 16 16 C 1.55158 * 111.00541 * 178.65064 * 14 13 12 17 17 C 1.54319 * 102.94531 * 206.42774 * 16 14 13 18 18 N 1.47030 * 107.27273 * 22.19352 * 17 16 14 19 19 C 1.36930 * 125.65173 * 181.02916 * 18 17 16 20 20 H 1.07996 * 120.00232 * 180.02562 * 19 18 17 21 21 C 1.38812 * 119.99852 * 0.03214 * 19 18 17 22 22 N 1.31615 * 120.00302 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00012 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47133 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46898 * 120.00321 * 23 21 19 26 26 H 1.48502 * 109.47286 * 240.00619 * 23 21 19 27 27 C 1.47431 * 108.69923 * 1.05953 * 18 17 16 28 28 C 1.39796 * 119.86442 * 359.77058 * 9 8 7 29 29 C 1.37603 * 119.93168 * 359.97438 * 28 9 8 30 30 H 1.08995 * 109.47306 * 60.00201 * 1 2 3 31 31 H 1.09000 * 109.46972 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47492 * 299.99931 * 1 2 3 33 33 H 1.09005 * 109.47298 * 119.99796 * 2 1 3 34 34 H 1.09005 * 109.46864 * 300.00061 * 3 2 1 35 35 H 1.08999 * 109.46877 * 59.99693 * 3 2 1 36 36 H 1.09000 * 109.47097 * 180.02562 * 3 2 1 37 37 H 1.09005 * 109.47294 * 89.99965 * 5 4 2 38 38 H 1.09000 * 109.46978 * 210.00071 * 5 4 2 39 39 H 1.08999 * 109.47415 * 329.99948 * 5 4 2 40 40 H 1.07996 * 119.97190 * 359.97438 * 7 6 4 41 41 H 1.07993 * 120.04017 * 180.25835 * 8 7 6 42 42 H 0.96996 * 119.99765 * 0.02562 * 12 10 9 43 43 H 1.08996 * 109.47401 * 300.00686 * 13 12 10 44 44 H 1.09003 * 109.47110 * 60.00134 * 13 12 10 45 45 H 1.09005 * 110.72006 * 324.79207 * 16 14 13 46 46 H 1.08995 * 110.72184 * 88.05886 * 16 14 13 47 47 H 1.09001 * 109.88271 * 262.77653 * 17 16 14 48 48 H 1.09001 * 110.01103 * 141.67933 * 17 16 14 49 49 H 0.96998 * 120.00715 * 179.97438 * 22 21 19 50 50 H 1.08997 * 110.36650 * 217.03344 * 27 18 17 51 51 H 1.09000 * 110.45732 * 94.75703 * 27 18 17 52 52 H 1.08001 * 120.03095 * 179.97438 * 28 9 8 53 53 H 1.07999 * 119.96654 * 179.97438 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 1.5817 -0.2529 -2.5242 6 6 2.8963 -1.7616 -1.0708 7 6 3.2203 -2.2501 0.1919 8 6 4.0851 -3.3130 0.3190 9 6 4.6463 -3.8957 -0.8211 10 6 5.5774 -5.0322 -0.6883 11 8 6.0645 -5.5384 -1.6808 12 7 5.8882 -5.5095 0.5333 13 6 6.8124 -6.6385 0.6653 14 6 6.9922 -6.9800 2.1457 15 1 7.3543 -6.1159 2.7027 16 6 7.9401 -8.1952 2.3250 17 6 7.4801 -8.7971 3.6695 18 7 6.0992 -8.3475 3.8993 19 6 5.3341 -8.6475 4.9946 20 1 4.3261 -8.2672 5.0697 21 6 5.8542 -9.4402 6.0085 22 7 7.0828 -9.9031 5.9174 23 14 4.8101 -9.8500 7.5024 24 1 3.4758 -9.2132 7.3635 25 1 4.6473 -11.3226 7.6035 26 1 5.4772 -9.3404 8.7274 27 6 5.6746 -7.5209 2.7548 28 6 4.3231 -3.3993 -2.0874 29 6 3.4536 -2.3397 -2.2081 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.1300 1.4425 -0.0005 37 1 2.2700 0.5030 -2.9022 38 1 1.5708 -1.1061 -3.2026 39 1 0.5794 0.1699 -2.4562 40 1 2.7899 -1.7967 1.0725 41 1 4.3328 -3.6942 1.2986 42 1 5.4993 -5.1059 1.3250 43 1 6.4070 -7.5032 0.1399 44 1 7.7769 -6.3708 0.2339 45 1 7.8052 -8.9123 1.5152 46 1 8.9785 -7.8691 2.3836 47 1 8.1242 -8.4424 4.4742 48 1 7.5124 -9.8855 3.6214 49 1 7.4464 -10.4567 6.6260 50 1 5.0472 -6.6967 3.0942 51 1 5.1399 -8.1277 2.0241 52 1 4.7554 -3.8472 -2.9700 53 1 3.2038 -1.9555 -3.1861 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029018052.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:52 Heat of formation + Delta-G solvation = 1.603602 kcal Electronic energy + Delta-G solvation = -29650.591693 eV Core-core repulsion = 25714.959023 eV Total energy + Delta-G solvation = -3935.632670 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.27616 -40.25631 -39.22341 -37.75529 -36.03775 -34.37509 -33.67090 -32.00368 -31.75918 -30.71157 -29.62801 -28.08956 -27.59957 -27.10388 -25.40403 -23.89637 -23.23244 -22.10978 -21.47697 -21.28729 -20.45345 -19.27727 -18.77434 -17.96825 -17.36799 -16.85019 -16.60021 -16.29652 -16.01295 -15.81324 -15.63702 -15.57974 -15.11505 -14.90189 -14.63459 -14.47985 -14.40787 -13.97176 -13.86205 -13.82142 -13.52496 -13.45193 -13.32237 -13.09651 -13.00174 -12.82602 -12.75403 -12.70012 -12.62695 -12.19942 -11.97023 -11.92356 -11.90400 -11.84142 -11.53464 -11.45233 -11.44820 -10.90388 -10.82962 -10.70433 -10.05568 -9.96373 -8.88690 -8.26166 -7.83838 -5.19394 0.09946 0.50561 1.46552 1.47803 1.58041 1.97115 2.10838 2.26453 2.50393 3.00933 3.34438 3.61218 3.71257 3.78912 3.86812 3.96787 4.02734 4.05263 4.05929 4.16051 4.29499 4.32259 4.41799 4.46257 4.52980 4.63587 4.65430 4.70051 4.72869 4.75259 4.79926 4.82046 4.88450 4.93029 4.97840 4.98632 5.07344 5.09314 5.09889 5.25830 5.28409 5.36256 5.37698 5.40332 5.47084 5.47757 5.55142 5.69055 5.78834 5.79510 6.21320 6.31431 6.48579 6.61168 7.11531 7.28378 7.79153 8.43929 9.26978 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.012262 B = 0.002083 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.914603 B =13438.509849 C =15305.298609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.129 3.871 3 C -0.158 4.158 4 N -0.617 5.617 5 C 0.081 3.919 6 C 0.244 3.756 7 C -0.215 4.215 8 C -0.031 4.031 9 C -0.221 4.221 10 C 0.560 3.440 11 O -0.593 6.593 12 N -0.716 5.716 13 C 0.145 3.855 14 C -0.095 4.095 15 H 0.090 0.910 16 C -0.123 4.123 17 C 0.183 3.817 18 N -0.629 5.629 19 C -0.239 4.239 20 H 0.084 0.916 21 C -0.070 4.070 22 N -0.953 5.953 23 Si 0.979 3.021 24 H -0.264 1.264 25 H -0.295 1.295 26 H -0.291 1.291 27 C 0.138 3.862 28 C -0.019 4.019 29 C -0.212 4.212 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.048 0.952 37 H 0.056 0.944 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.146 0.854 41 H 0.139 0.861 42 H 0.409 0.591 43 H 0.057 0.943 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.086 0.914 47 H 0.013 0.987 48 H 0.004 0.996 49 H 0.246 0.754 50 H 0.050 0.950 51 H 0.017 0.983 52 H 0.124 0.876 53 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.016 25.928 -15.953 32.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.026 3.974 3 C -0.217 4.217 4 N -0.325 5.325 5 C -0.062 4.062 6 C 0.138 3.862 7 C -0.237 4.237 8 C -0.051 4.051 9 C -0.227 4.227 10 C 0.350 3.650 11 O -0.475 6.475 12 N -0.368 5.368 13 C 0.021 3.979 14 C -0.115 4.115 15 H 0.109 0.891 16 C -0.161 4.161 17 C 0.058 3.942 18 N -0.355 5.355 19 C -0.368 4.368 20 H 0.102 0.898 21 C -0.263 4.263 22 N -0.602 5.602 23 Si 0.807 3.193 24 H -0.188 1.188 25 H -0.222 1.222 26 H -0.218 1.218 27 C 0.013 3.987 28 C -0.038 4.038 29 C -0.234 4.234 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.164 0.836 41 H 0.157 0.843 42 H 0.247 0.753 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.088 0.912 46 H 0.105 0.895 47 H 0.032 0.968 48 H 0.022 0.978 49 H 0.055 0.945 50 H 0.068 0.932 51 H 0.034 0.966 52 H 0.142 0.858 53 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.822 25.640 -16.471 32.688 hybrid contribution -0.269 -0.759 1.307 1.535 sum -12.091 24.881 -15.164 31.547 Atomic orbital electron populations 1.22150 0.94038 1.02243 1.03400 1.21307 0.94868 0.93398 0.87828 1.22142 1.01037 0.95314 1.03170 1.46761 1.47002 1.31488 1.07235 1.21833 1.00779 1.00565 0.82974 1.18172 0.87744 0.86501 0.93818 1.20841 1.05082 1.01138 0.96599 1.21208 0.92877 0.93366 0.97600 1.19573 1.06180 1.01402 0.95503 1.18573 0.80677 0.83001 0.82699 1.90712 1.56232 1.62066 1.38510 1.45866 1.47726 1.34716 1.08463 1.21155 0.93404 0.88447 0.94906 1.22418 0.96403 0.98424 0.94250 0.89137 1.22724 0.99419 0.96656 0.97351 1.20923 0.85062 0.95413 0.92823 1.44821 1.12466 1.58739 1.19473 1.19515 0.96151 1.25486 0.95691 0.89787 1.25687 0.98037 1.00690 1.01886 1.70200 1.15944 1.39843 1.34229 0.84996 0.78255 0.77076 0.78928 1.18775 1.22211 1.21831 1.21737 0.95145 0.93169 0.88647 1.21014 0.93284 0.93243 0.96301 1.20747 1.03461 1.00854 0.98379 0.91505 0.93079 0.90191 0.88881 0.91922 0.90281 0.93325 0.92577 0.90941 0.89692 0.83609 0.84312 0.75330 0.92448 0.90814 0.91162 0.89537 0.96824 0.97800 0.94477 0.93205 0.96552 0.85773 0.83775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 9.08 71.98 0.65 -0.44 16 2 C 0.13 1.15 3.19 44.99 0.14 1.29 16 3 C -0.16 -1.15 9.26 71.98 0.67 -0.49 16 4 N -0.62 -7.21 2.88 -698.09 -2.01 -9.22 16 5 C 0.08 0.62 9.28 127.77 1.19 1.80 16 6 C 0.24 4.02 6.54 38.47 0.25 4.27 16 7 C -0.21 -3.62 9.29 22.36 0.21 -3.42 16 8 C -0.03 -0.61 9.53 22.50 0.21 -0.40 16 9 C -0.22 -5.46 5.88 -20.07 -0.12 -5.58 16 10 C 0.56 16.76 7.76 86.69 0.67 17.43 16 11 O -0.59 -22.00 16.34 -4.00 -0.07 -22.07 16 12 N -0.72 -19.10 5.36 -466.28 -2.50 -21.60 16 13 C 0.14 4.21 5.12 86.38 0.44 4.65 16 14 C -0.10 -3.09 3.11 -9.40 -0.03 -3.11 16 15 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 16 C -0.12 -4.45 6.42 31.78 0.20 -4.25 16 17 C 0.18 9.14 5.38 86.73 0.47 9.61 16 18 N -0.63 -32.43 3.39 -691.96 -2.35 -34.77 16 19 C -0.24 -13.46 10.28 84.03 0.86 -12.60 16 20 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 21 C -0.07 -4.04 5.49 84.86 0.47 -3.58 16 22 N -0.95 -58.13 10.31 21.65 0.22 -57.91 16 23 Si 0.98 46.00 29.55 68.60 2.03 48.03 16 24 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 25 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 26 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 27 C 0.14 5.48 6.41 86.86 0.56 6.03 16 28 C -0.02 -0.42 9.58 22.50 0.22 -0.21 16 29 C -0.21 -3.78 9.13 22.36 0.20 -3.58 16 30 H 0.07 0.36 6.53 -2.39 -0.02 0.35 16 31 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.09 0.87 5.28 -2.38 -0.01 0.85 16 34 H 0.06 0.40 7.79 -2.38 -0.02 0.38 16 35 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.06 0.38 8.14 -2.38 -0.02 0.36 16 38 H 0.07 0.55 6.43 -2.39 -0.02 0.53 16 39 H 0.08 0.41 6.19 -2.39 -0.01 0.39 16 40 H 0.15 1.87 5.71 -2.91 -0.02 1.85 16 41 H 0.14 2.25 6.39 -2.91 -0.02 2.23 16 42 H 0.41 9.16 6.35 -92.71 -0.59 8.57 16 43 H 0.06 1.82 8.10 -2.39 -0.02 1.80 16 44 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.07 2.42 8.04 -2.38 -0.02 2.40 16 46 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 47 H 0.01 0.75 7.38 -2.39 -0.02 0.74 16 48 H 0.00 0.21 7.50 -2.39 -0.02 0.20 16 49 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 50 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 51 H 0.02 0.68 8.00 -2.39 -0.02 0.66 16 52 H 0.12 2.98 7.64 -2.91 -0.02 2.95 16 53 H 0.14 1.93 6.28 -2.91 -0.02 1.91 16 Total: -1.00 -74.52 412.89 2.91 -71.61 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.32 Total: 18.50 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: 7.27 Total: 7.44 kcal Atomic # 7 Polarization: -116.87 SS G_CDS: -6.63 Total: -123.50 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.07 Total: -22.07 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -74.52 2.91 -71.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029018052.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.213 kcal (2) G-P(sol) polarization free energy of solvation -74.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds