Wall clock time and date at job start Wed Apr 1 2020 04:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46923 * 2 1 4 4 N 1.46503 * 109.46718 * 119.99197 * 2 1 3 5 5 C 1.46497 * 120.00376 * 304.68798 * 4 2 1 6 6 C 1.39051 * 119.99522 * 124.68104 * 4 2 1 7 7 C 1.39214 * 119.93237 * 354.17535 * 6 4 2 8 8 C 1.37615 * 120.06979 * 179.97438 * 7 6 4 9 9 C 1.39789 * 119.92715 * 359.97438 * 8 7 6 10 10 C 1.47522 * 120.06728 * 179.97438 * 9 8 7 11 11 O 1.21605 * 119.99937 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00523 * 180.02562 * 10 9 8 13 13 C 1.46502 * 120.00359 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.47041 * 180.02562 * 13 12 10 15 15 H 1.09000 * 110.64327 * 56.68661 * 14 13 12 16 16 C 1.55152 * 110.71983 * 180.02562 * 14 13 12 17 17 C 1.54901 * 101.58245 * 153.86373 * 16 14 13 18 18 N 1.47424 * 104.83444 * 322.99065 * 17 16 14 19 19 C 1.36939 * 125.65357 * 204.16663 * 18 17 16 20 20 H 1.07998 * 120.00050 * 179.97438 * 19 18 17 21 21 C 1.38813 * 119.99875 * 359.95435 * 19 18 17 22 22 N 1.31622 * 119.99750 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00234 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47063 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47248 * 120.00135 * 23 21 19 26 26 H 1.48499 * 109.47208 * 240.00116 * 23 21 19 27 27 C 1.47026 * 108.70318 * 24.12906 * 18 17 16 28 28 C 1.39793 * 119.86956 * 0.25330 * 9 8 7 29 29 C 1.37613 * 119.92464 * 359.46979 * 28 9 8 30 30 H 1.08997 * 109.47299 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47791 * 300.00706 * 1 2 3 32 32 H 1.09010 * 109.47181 * 60.00485 * 1 2 3 33 33 H 1.08990 * 109.47553 * 239.99642 * 2 1 3 34 34 H 1.09003 * 109.47367 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.47225 * 299.99302 * 3 2 1 36 36 H 1.09005 * 109.47787 * 59.99647 * 3 2 1 37 37 H 1.09001 * 109.46573 * 269.99717 * 5 4 2 38 38 H 1.08994 * 109.47376 * 29.99350 * 5 4 2 39 39 H 1.09004 * 109.47053 * 149.99954 * 5 4 2 40 40 H 1.08005 * 119.96535 * 359.97438 * 7 6 4 41 41 H 1.08001 * 120.03211 * 180.02562 * 8 7 6 42 42 H 0.96999 * 119.99611 * 0.02562 * 12 10 9 43 43 H 1.08997 * 109.46912 * 299.99549 * 13 12 10 44 44 H 1.08993 * 109.47129 * 59.99978 * 13 12 10 45 45 H 1.08994 * 111.00449 * 271.94292 * 16 14 13 46 46 H 1.08997 * 111.00292 * 35.78816 * 16 14 13 47 47 H 1.09000 * 110.36754 * 204.15427 * 17 16 14 48 48 H 1.09000 * 110.37156 * 81.82913 * 17 16 14 49 49 H 0.97004 * 119.99941 * 180.02562 * 22 21 19 50 50 H 1.09002 * 109.88282 * 239.52784 * 27 18 17 51 51 H 1.08991 * 110.01051 * 118.43082 * 27 18 17 52 52 H 1.07990 * 120.04082 * 179.72125 * 28 9 8 53 53 H 1.07998 * 119.96877 * 180.25503 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 1.5816 -0.2525 2.5244 6 6 2.8959 -1.7616 1.0711 7 6 3.2150 -2.2544 -0.1912 8 6 4.0837 -3.3141 -0.3184 9 6 4.6464 -3.8953 0.8217 10 6 5.5776 -5.0318 0.6889 11 8 5.8561 -5.4641 -0.4130 12 7 6.1190 -5.5915 1.7889 13 6 7.0433 -6.7205 1.6571 14 6 7.5082 -7.1638 3.0458 15 1 6.6543 -7.4172 3.6741 16 6 8.4907 -8.3599 2.9398 17 6 9.3180 -8.1989 4.2394 18 7 9.4687 -6.7427 4.4130 19 6 10.4684 -6.1215 5.1128 20 1 10.4907 -5.0439 5.1810 21 6 11.4530 -6.8768 5.7349 22 7 11.4258 -8.1901 5.6516 23 14 12.8164 -6.0295 6.6901 24 1 12.6214 -4.5586 6.6317 25 1 12.7818 -6.4781 8.1053 26 1 14.1302 -6.3783 6.0923 27 6 8.3682 -6.0677 3.7094 28 6 4.3204 -3.4013 2.0881 29 6 3.4555 -2.3378 2.2084 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 1.8933 -0.5138 -0.8898 34 1 3.1299 1.4426 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6765 1.9565 0.8900 37 1 2.2701 0.5034 2.9021 38 1 0.5794 0.1705 2.4562 39 1 1.5706 -1.1056 3.2029 40 1 2.7802 -1.8046 -1.0716 41 1 4.3311 -3.6957 -1.2980 42 1 5.8960 -5.2474 2.6679 43 1 6.5366 -7.5490 1.1623 44 1 7.9062 -6.4163 1.0647 45 1 7.9529 -9.3079 2.9339 46 1 9.1254 -8.2672 2.0586 47 1 10.2943 -8.6707 4.1286 48 1 8.7822 -8.6283 5.0860 49 1 12.1136 -8.7180 6.0866 50 1 8.7698 -5.3996 2.9475 51 1 7.7644 -5.5010 4.4181 52 1 4.7500 -3.8512 2.9709 53 1 3.2063 -1.9529 3.1862 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029018053.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:57 Heat of formation + Delta-G solvation = 3.111858 kcal Electronic energy + Delta-G solvation = -29589.809611 eV Core-core repulsion = 25654.242345 eV Total energy + Delta-G solvation = -3935.567267 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.28872 -40.27011 -39.22703 -37.76467 -36.05798 -34.35549 -33.68538 -32.26756 -31.50697 -30.63228 -29.71514 -28.09791 -27.69751 -27.02139 -25.27056 -24.23897 -22.95064 -22.18452 -21.61226 -21.14808 -20.46621 -19.26338 -18.81834 -18.00941 -17.34238 -16.89055 -16.62746 -16.37059 -15.96326 -15.88493 -15.62414 -15.56527 -15.12315 -14.89250 -14.73578 -14.35884 -14.28595 -14.20198 -13.86492 -13.55245 -13.52989 -13.45443 -13.31337 -13.16795 -13.06124 -12.83419 -12.79678 -12.68941 -12.66126 -12.20836 -11.97675 -11.93121 -11.88928 -11.81814 -11.57692 -11.47157 -11.36659 -10.90806 -10.83546 -10.73995 -10.07439 -9.97161 -8.87070 -8.26795 -7.76886 -5.20894 0.08934 0.49812 1.46469 1.47631 1.57852 1.95901 2.10416 2.25205 2.49896 3.00004 3.32578 3.62805 3.70781 3.79403 3.87211 3.95539 3.98560 4.03135 4.08902 4.15349 4.27669 4.28969 4.43190 4.46872 4.52577 4.66038 4.66785 4.69849 4.71229 4.74807 4.79018 4.81585 4.88576 4.92386 4.97590 4.98130 5.06969 5.09089 5.14172 5.23924 5.28870 5.35468 5.36159 5.37989 5.44680 5.49298 5.54375 5.67394 5.78189 5.83859 6.30951 6.32799 6.48004 6.60133 7.12087 7.27317 7.79804 8.43481 9.25196 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.015865 B = 0.001900 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.462785 B =14736.838157 C =15898.767838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.129 3.871 3 C -0.159 4.159 4 N -0.617 5.617 5 C 0.080 3.920 6 C 0.244 3.756 7 C -0.215 4.215 8 C -0.019 4.019 9 C -0.221 4.221 10 C 0.559 3.441 11 O -0.594 6.594 12 N -0.716 5.716 13 C 0.145 3.855 14 C -0.094 4.094 15 H 0.097 0.903 16 C -0.123 4.123 17 C 0.152 3.848 18 N -0.628 5.628 19 C -0.237 4.237 20 H 0.080 0.920 21 C -0.070 4.070 22 N -0.949 5.949 23 Si 0.980 3.020 24 H -0.267 1.267 25 H -0.291 1.291 26 H -0.292 1.292 27 C 0.138 3.862 28 C -0.031 4.031 29 C -0.211 4.211 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.045 0.955 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.144 0.856 41 H 0.123 0.877 42 H 0.410 0.590 43 H 0.075 0.925 44 H 0.051 0.949 45 H 0.090 0.910 46 H 0.061 0.939 47 H 0.071 0.929 48 H -0.008 1.008 49 H 0.247 0.753 50 H 0.018 0.982 51 H 0.030 0.970 52 H 0.140 0.860 53 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.685 17.850 -9.805 33.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.026 3.974 3 C -0.217 4.217 4 N -0.325 5.325 5 C -0.062 4.062 6 C 0.138 3.862 7 C -0.237 4.237 8 C -0.039 4.039 9 C -0.227 4.227 10 C 0.350 3.650 11 O -0.476 6.476 12 N -0.367 5.367 13 C 0.021 3.979 14 C -0.113 4.113 15 H 0.116 0.884 16 C -0.162 4.162 17 C 0.027 3.973 18 N -0.354 5.354 19 C -0.366 4.366 20 H 0.097 0.903 21 C -0.262 4.262 22 N -0.599 5.599 23 Si 0.809 3.191 24 H -0.192 1.192 25 H -0.218 1.218 26 H -0.220 1.220 27 C 0.013 3.987 28 C -0.050 4.050 29 C -0.233 4.233 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.162 0.838 41 H 0.141 0.859 42 H 0.247 0.753 43 H 0.093 0.907 44 H 0.069 0.931 45 H 0.108 0.892 46 H 0.080 0.920 47 H 0.089 0.911 48 H 0.010 0.990 49 H 0.056 0.944 50 H 0.036 0.964 51 H 0.048 0.952 52 H 0.158 0.842 53 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -26.463 17.699 -10.408 33.494 hybrid contribution 1.117 0.162 1.031 1.529 sum -25.346 17.861 -9.377 32.394 Atomic orbital electron populations 1.22141 0.93813 1.02310 1.03432 1.21303 0.95021 0.93293 0.87814 1.22148 1.00935 0.95445 1.03215 1.46764 1.47017 1.31445 1.07257 1.21843 1.00755 1.00648 0.82928 1.18174 0.87773 0.86512 0.93769 1.20781 1.05164 1.01051 0.96746 1.21001 0.92167 0.92875 0.97855 1.19566 1.06111 1.01496 0.95501 1.18605 0.80043 0.82715 0.83676 1.90718 1.64052 1.65412 1.27447 1.45857 1.46705 1.34624 1.09531 1.21198 0.92189 0.88520 0.96037 1.22292 0.97992 0.95818 0.95190 0.88438 1.22849 0.97198 0.97768 0.98355 1.21733 0.98909 0.84465 0.92185 1.44828 1.27268 1.02939 1.60352 1.19488 1.01747 0.91523 1.23863 0.90252 1.25644 1.01692 0.96374 1.02503 1.70065 1.36026 1.04609 1.49160 0.84979 0.78600 0.77994 0.77577 1.19152 1.21800 1.21951 1.21489 0.88943 0.94388 0.93920 1.21219 0.93959 0.93963 0.95871 1.20818 1.03384 1.00755 0.98361 0.92936 0.91522 0.90118 0.89021 0.93558 0.90187 0.91910 0.92762 0.89629 0.90691 0.83818 0.85855 0.75279 0.90705 0.93085 0.89157 0.92027 0.91105 0.99000 0.94363 0.96361 0.95171 0.84228 0.83466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 9.08 71.98 0.65 -0.31 16 2 C 0.13 1.13 3.19 44.99 0.14 1.27 16 3 C -0.16 -1.20 9.26 71.98 0.67 -0.53 16 4 N -0.62 -7.19 2.88 -698.12 -2.01 -9.20 16 5 C 0.08 0.62 9.28 127.77 1.19 1.80 16 6 C 0.24 4.03 6.54 38.47 0.25 4.28 16 7 C -0.22 -3.92 9.29 22.36 0.21 -3.71 16 8 C -0.02 -0.45 9.58 22.50 0.22 -0.23 16 9 C -0.22 -5.55 5.88 -20.08 -0.12 -5.66 16 10 C 0.56 17.10 7.76 86.69 0.67 17.77 16 11 O -0.59 -22.60 16.34 -4.05 -0.07 -22.66 16 12 N -0.72 -19.49 5.35 -466.27 -2.49 -21.98 16 13 C 0.14 4.35 4.99 86.38 0.43 4.78 16 14 C -0.09 -3.05 3.02 -9.60 -0.03 -3.08 16 15 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 16 C -0.12 -4.52 6.53 31.98 0.21 -4.31 16 17 C 0.15 7.54 5.89 86.85 0.51 8.05 16 18 N -0.63 -32.65 3.39 -692.00 -2.35 -35.00 16 19 C -0.24 -13.48 10.27 84.03 0.86 -12.62 16 20 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 21 C -0.07 -4.01 5.49 84.86 0.47 -3.55 16 22 N -0.95 -57.16 10.09 21.65 0.22 -56.94 16 23 Si 0.98 46.23 29.55 68.60 2.03 48.26 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 25 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 26 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 27 C 0.14 5.58 6.52 86.73 0.57 6.15 16 28 C -0.03 -0.60 9.53 22.50 0.21 -0.39 16 29 C -0.21 -3.51 9.13 22.36 0.20 -3.31 16 30 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.07 0.32 6.53 -2.39 -0.02 0.31 16 32 H 0.08 0.31 8.14 -2.38 -0.02 0.29 16 33 H 0.09 0.85 5.28 -2.39 -0.01 0.84 16 34 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.06 0.42 7.79 -2.38 -0.02 0.40 16 37 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.09 0.40 6.19 -2.39 -0.01 0.38 16 39 H 0.07 0.54 6.44 -2.38 -0.02 0.52 16 40 H 0.14 2.01 5.72 -2.91 -0.02 1.99 16 41 H 0.12 3.03 7.64 -2.91 -0.02 3.01 16 42 H 0.41 9.20 6.34 -92.71 -0.59 8.61 16 43 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.05 1.75 8.06 -2.39 -0.02 1.73 16 45 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 46 H 0.06 2.30 8.05 -2.39 -0.02 2.28 16 47 H 0.07 4.04 5.87 -2.39 -0.01 4.02 16 48 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 49 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 50 H 0.02 0.77 7.77 -2.39 -0.02 0.75 16 51 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 52 H 0.14 2.22 6.39 -2.92 -0.02 2.20 16 53 H 0.15 1.79 6.28 -2.91 -0.02 1.77 16 Total: -1.00 -74.16 412.05 2.96 -71.20 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 0.32 Total: 19.92 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 7.31 Total: 6.40 kcal Atomic # 7 Polarization: -116.49 SS G_CDS: -6.63 Total: -123.12 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.07 Total: -22.66 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -74.16 2.96 -71.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029018053.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.308 kcal (2) G-P(sol) polarization free energy of solvation -74.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds