Wall clock time and date at job start Wed Apr 1 2020 04:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47244 * 2 1 4 4 N 1.46494 * 109.47161 * 119.99791 * 2 1 3 5 5 C 1.46498 * 120.00228 * 303.56310 * 4 2 1 6 6 C 1.39050 * 120.00004 * 123.56155 * 4 2 1 7 7 C 1.39222 * 119.93144 * 174.25044 * 6 4 2 8 8 C 1.37610 * 120.07298 * 180.02562 * 7 6 4 9 9 C 1.39799 * 119.92614 * 359.97438 * 8 7 6 10 10 C 1.47515 * 120.06606 * 180.02562 * 9 8 7 11 11 O 1.21603 * 119.99916 * 222.30219 * 10 9 8 12 12 N 1.34778 * 120.00535 * 42.30143 * 10 9 8 13 13 C 1.46499 * 119.99285 * 355.71988 * 12 10 9 14 14 C 1.46501 * 120.00209 * 175.72269 * 12 10 9 15 15 H 1.09000 * 110.63776 * 1.69044 * 14 12 10 16 16 C 1.55162 * 110.86899 * 124.93330 * 14 12 10 17 17 C 1.55131 * 101.48424 * 82.76823 * 16 14 12 18 18 N 1.47421 * 104.72395 * 37.29323 * 17 16 14 19 19 C 1.36934 * 125.65011 * 155.82146 * 18 17 16 20 20 H 1.08009 * 120.00070 * 179.97438 * 19 18 17 21 21 C 1.38813 * 120.00149 * 359.68921 * 19 18 17 22 22 N 1.31622 * 119.99630 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00111 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47219 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47115 * 120.00014 * 23 21 19 26 26 H 1.48504 * 109.46830 * 239.99879 * 23 21 19 27 27 C 1.47023 * 108.70310 * 335.55115 * 18 17 16 28 28 C 1.39796 * 119.86447 * 0.27446 * 9 8 7 29 29 C 1.37611 * 119.92907 * 359.46590 * 28 9 8 30 30 H 1.08996 * 109.47055 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47096 * 300.00721 * 1 2 3 32 32 H 1.09001 * 109.47193 * 60.00152 * 1 2 3 33 33 H 1.09002 * 109.47408 * 239.99962 * 2 1 3 34 34 H 1.08998 * 109.46751 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.46901 * 300.00027 * 3 2 1 36 36 H 1.08988 * 109.47145 * 59.99802 * 3 2 1 37 37 H 1.08999 * 109.47627 * 270.00183 * 5 4 2 38 38 H 1.09007 * 109.46768 * 29.99992 * 5 4 2 39 39 H 1.08995 * 109.47392 * 149.99924 * 5 4 2 40 40 H 1.08002 * 119.96265 * 0.03224 * 7 6 4 41 41 H 1.07995 * 120.03575 * 179.97438 * 8 7 6 42 42 H 1.09000 * 109.47268 * 271.48879 * 13 12 10 43 43 H 1.08994 * 109.47452 * 31.49642 * 13 12 10 44 44 H 1.09008 * 109.46787 * 151.49557 * 13 12 10 45 45 H 1.08995 * 110.99994 * 201.00492 * 16 14 12 46 46 H 1.08999 * 111.00577 * 324.85735 * 16 14 12 47 47 H 1.09004 * 110.49340 * 278.45197 * 17 16 14 48 48 H 1.08996 * 110.34476 * 156.06073 * 17 16 14 49 49 H 0.96998 * 120.00175 * 180.02562 * 22 21 19 50 50 H 1.09002 * 109.88166 * 120.70412 * 27 18 17 51 51 H 1.08997 * 109.88533 * 241.86969 * 27 18 17 52 52 H 1.07997 * 120.03496 * 179.72778 * 28 9 8 53 53 H 1.07994 * 119.96887 * 180.25251 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1961 5 6 1.6012 -0.2372 2.5253 6 6 2.8777 -1.7763 1.0699 7 6 3.4357 -2.3563 2.2060 8 6 4.2870 -3.4307 2.0844 9 6 4.5909 -3.9400 0.8184 10 6 5.5026 -5.0919 0.6846 11 8 6.3474 -5.1002 -0.1900 12 7 5.3994 -6.1351 1.5317 13 6 4.4457 -6.0849 2.6425 14 6 6.2409 -7.3192 1.3415 15 1 6.9111 -7.1820 0.4929 16 6 7.0447 -7.6387 2.6297 17 6 5.9987 -8.4300 3.4581 18 7 5.2675 -9.2377 2.4650 19 6 4.5960 -10.4030 2.7224 20 1 4.0889 -10.9221 1.9224 21 6 4.5721 -10.9204 4.0103 22 7 5.1953 -10.2910 4.9839 23 14 3.6568 -12.5104 4.3612 24 1 3.0454 -13.0170 3.1063 25 1 4.6060 -13.5210 4.8930 26 1 2.5907 -12.2569 5.3635 27 6 5.3730 -8.5813 1.1536 28 6 4.0331 -3.3521 -0.3207 29 6 3.1783 -2.2814 -0.1921 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 2.3050 0.5100 2.8919 38 1 0.6052 0.2013 2.4636 39 1 1.5829 -1.0855 3.2094 40 1 3.2001 -1.9627 3.1837 41 1 4.7198 -3.8798 2.9660 42 1 4.9232 -5.6316 3.5112 43 1 3.5802 -5.4897 2.3518 44 1 4.1241 -7.0963 2.8913 45 1 7.9157 -8.2538 2.4041 46 1 7.3373 -6.7237 3.1447 47 1 5.3184 -7.7467 3.9665 48 1 6.4976 -9.0767 4.1799 49 1 5.1790 -10.6527 5.8838 50 1 5.8474 -9.2543 0.4394 51 1 4.3815 -8.3000 0.7990 52 1 4.2694 -3.7406 -1.3002 53 1 2.7438 -1.8294 -1.0714 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033701111.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:11 Heat of formation + Delta-G solvation = 32.123885 kcal Electronic energy + Delta-G solvation = -30850.823339 eV Core-core repulsion = 26916.514128 eV Total energy + Delta-G solvation = -3934.309211 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.60498 -40.45273 -39.03308 -37.75254 -35.99079 -34.12852 -33.56917 -32.11000 -31.11405 -30.44727 -29.54813 -28.07659 -27.72284 -27.37371 -26.19945 -24.19150 -23.40670 -22.04656 -21.93480 -20.80622 -20.17682 -18.95882 -18.71786 -18.21098 -17.47886 -16.86007 -16.66831 -16.24865 -15.89347 -15.64843 -15.62464 -15.58587 -14.97921 -14.80768 -14.50416 -14.44037 -14.23803 -13.86074 -13.83622 -13.69305 -13.52737 -13.36752 -13.26746 -13.21535 -12.94283 -12.91773 -12.82562 -12.80082 -12.68320 -12.40127 -12.19210 -12.01574 -11.97243 -11.84802 -11.77886 -11.45874 -11.40002 -10.91139 -10.72908 -10.61801 -9.92911 -9.64725 -8.86064 -8.23293 -7.74627 -5.18875 0.20578 0.50108 1.48745 1.49498 1.59518 1.75578 2.04235 2.13786 2.51114 2.90498 3.35334 3.57631 3.72507 3.74556 3.88707 3.91585 4.00571 4.05398 4.17019 4.24856 4.29231 4.31027 4.36694 4.43634 4.54720 4.62410 4.64855 4.66808 4.70128 4.71708 4.75942 4.80423 4.89631 4.89757 4.92188 4.98443 4.99734 5.03291 5.09821 5.12453 5.25790 5.29782 5.36764 5.37070 5.46985 5.51941 5.61994 5.69110 5.79199 5.84668 6.33664 6.34069 6.45043 6.51245 7.13296 7.15703 7.78794 8.43192 9.26535 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.016501 B = 0.002325 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.412630 B =12038.944310 C =12840.196633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.129 3.871 3 C -0.158 4.158 4 N -0.619 5.619 5 C 0.082 3.918 6 C 0.241 3.759 7 C -0.207 4.207 8 C -0.037 4.037 9 C -0.213 4.213 10 C 0.562 3.438 11 O -0.589 6.589 12 N -0.590 5.590 13 C 0.077 3.923 14 C 0.136 3.864 15 H 0.100 0.900 16 C -0.139 4.139 17 C 0.151 3.849 18 N -0.618 5.618 19 C -0.236 4.236 20 H 0.076 0.924 21 C -0.061 4.061 22 N -0.944 5.944 23 Si 0.977 3.023 24 H -0.271 1.271 25 H -0.293 1.293 26 H -0.291 1.291 27 C 0.129 3.871 28 C -0.025 4.025 29 C -0.211 4.211 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.046 0.954 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.148 0.852 41 H 0.137 0.863 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.017 0.983 48 H 0.072 0.928 49 H 0.247 0.753 50 H 0.033 0.967 51 H 0.022 0.978 52 H 0.121 0.879 53 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.346 25.989 -6.322 28.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.026 3.974 3 C -0.216 4.216 4 N -0.327 5.327 5 C -0.061 4.061 6 C 0.135 3.865 7 C -0.230 4.230 8 C -0.056 4.056 9 C -0.218 4.218 10 C 0.353 3.647 11 O -0.471 6.471 12 N -0.321 5.321 13 C -0.065 4.065 14 C 0.032 3.968 15 H 0.118 0.882 16 C -0.179 4.179 17 C 0.027 3.973 18 N -0.345 5.345 19 C -0.364 4.364 20 H 0.094 0.906 21 C -0.254 4.254 22 N -0.594 5.594 23 Si 0.806 3.194 24 H -0.196 1.196 25 H -0.220 1.220 26 H -0.218 1.218 27 C 0.003 3.997 28 C -0.045 4.045 29 C -0.233 4.233 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.066 0.934 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.165 0.835 41 H 0.154 0.846 42 H 0.087 0.913 43 H 0.103 0.897 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.098 0.902 47 H 0.035 0.965 48 H 0.090 0.910 49 H 0.057 0.943 50 H 0.051 0.949 51 H 0.040 0.960 52 H 0.139 0.861 53 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.123 26.016 -6.580 28.343 hybrid contribution -0.208 -1.284 0.346 1.346 sum -9.331 24.732 -6.234 27.158 Atomic orbital electron populations 1.22147 0.94028 1.02192 1.03400 1.21293 0.94867 0.93406 0.87806 1.22135 1.00972 0.95272 1.03219 1.46722 1.48437 1.30359 1.07138 1.21822 1.00866 1.00433 0.82933 1.18116 0.88137 0.86594 0.93661 1.20781 1.03434 1.00339 0.98412 1.21340 0.94241 0.94206 0.95860 1.19458 1.06208 1.00410 0.95741 1.18796 0.83175 0.82634 0.80068 1.90696 1.38186 1.81421 1.36818 1.47723 1.39150 1.15837 1.29362 1.22250 0.92299 1.03638 0.88335 1.21890 0.91973 0.83688 0.99253 0.88227 1.23234 0.98317 1.00329 0.95984 1.21971 0.91462 0.92325 0.91544 1.44749 1.61123 1.24448 1.04170 1.19407 1.24732 0.98186 0.94122 0.90614 1.25530 1.02072 1.02202 0.95590 1.70030 1.48177 1.40686 1.00463 0.85023 0.77503 0.79201 0.77652 1.19594 1.21978 1.21767 1.21683 0.96907 0.92404 0.88723 1.20902 0.92967 0.93448 0.97184 1.20740 1.05204 1.00566 0.96800 0.93173 0.91542 0.90101 0.89099 0.93438 0.90190 0.91860 0.92611 0.89734 0.90931 0.83483 0.84571 0.91307 0.89660 0.91420 0.90726 0.90232 0.96479 0.90970 0.94275 0.94940 0.95986 0.86053 0.83705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.10 71.98 0.66 -0.62 16 2 C 0.13 1.34 3.19 44.99 0.14 1.48 16 3 C -0.16 -1.33 9.25 71.98 0.67 -0.66 16 4 N -0.62 -8.40 2.88 -698.09 -2.01 -10.41 16 5 C 0.08 0.77 9.24 127.77 1.18 1.95 16 6 C 0.24 4.55 6.54 38.47 0.25 4.80 16 7 C -0.21 -4.07 9.13 22.36 0.20 -3.86 16 8 C -0.04 -0.89 7.54 22.50 0.17 -0.72 16 9 C -0.21 -6.20 5.13 -20.08 -0.10 -6.31 16 10 C 0.56 20.08 7.30 86.69 0.63 20.72 16 11 O -0.59 -24.69 16.32 -4.04 -0.07 -24.76 16 12 N -0.59 -20.98 2.83 -819.71 -2.32 -23.30 16 13 C 0.08 2.49 7.06 127.77 0.90 3.39 16 14 C 0.14 5.29 3.57 46.18 0.16 5.46 16 15 H 0.10 3.91 6.99 -2.39 -0.02 3.90 16 16 C -0.14 -5.45 6.55 32.07 0.21 -5.24 16 17 C 0.15 7.23 5.03 86.93 0.44 7.67 16 18 N -0.62 -31.58 2.98 -691.55 -2.06 -33.63 16 19 C -0.24 -13.11 10.27 84.03 0.86 -12.24 16 20 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 21 C -0.06 -3.41 5.49 84.86 0.47 -2.94 16 22 N -0.94 -54.67 10.08 21.65 0.22 -54.45 16 23 Si 0.98 45.29 29.55 68.60 2.03 47.32 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 25 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 26 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 27 C 0.13 5.67 6.25 86.73 0.54 6.21 16 28 C -0.03 -0.66 9.64 22.50 0.22 -0.44 16 29 C -0.21 -4.33 9.28 22.36 0.21 -4.12 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.44 6.55 -2.39 -0.02 0.43 16 32 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.09 1.00 5.28 -2.39 -0.01 0.98 16 34 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.06 0.47 7.76 -2.39 -0.02 0.45 16 37 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.08 0.55 6.25 -2.38 -0.01 0.53 16 39 H 0.07 0.69 6.43 -2.39 -0.02 0.68 16 40 H 0.15 2.20 6.28 -2.91 -0.02 2.18 16 41 H 0.14 3.07 5.72 -2.91 -0.02 3.06 16 42 H 0.07 1.98 6.99 -2.39 -0.02 1.97 16 43 H 0.09 2.42 5.75 -2.39 -0.01 2.41 16 44 H 0.07 2.70 5.09 -2.38 -0.01 2.69 16 45 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 46 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 47 H 0.02 0.84 5.54 -2.38 -0.01 0.82 16 48 H 0.07 3.98 5.85 -2.39 -0.01 3.97 16 49 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 50 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 51 H 0.02 0.99 8.04 -2.39 -0.02 0.97 16 52 H 0.12 3.19 8.06 -2.91 -0.02 3.17 16 53 H 0.15 2.31 5.72 -2.91 -0.02 2.29 16 Total: -1.00 -68.96 399.10 4.52 -64.44 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.91 Total: 20.27 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: 7.81 Total: 14.52 kcal Atomic # 7 Polarization: -115.62 SS G_CDS: -6.16 Total: -121.79 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.07 Total: -24.76 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -68.96 4.52 -64.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033701111.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.565 kcal (2) G-P(sol) polarization free energy of solvation -68.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds