Wall clock time and date at job start Wed Apr 1 2020 04:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46953 * 2 1 4 4 N 1.46500 * 109.47040 * 179.97438 * 3 2 1 5 5 C 1.46499 * 120.00005 * 269.99875 * 4 3 2 6 6 C 1.39043 * 119.99661 * 90.00428 * 4 3 2 7 7 C 1.39224 * 119.92708 * 179.97438 * 6 4 3 8 8 C 1.37614 * 120.06759 * 179.97438 * 7 6 4 9 9 C 1.39798 * 119.92737 * 0.02562 * 8 7 6 10 10 C 1.47526 * 120.06588 * 180.02562 * 9 8 7 11 11 O 1.21590 * 119.99808 * 221.17974 * 10 9 8 12 12 N 1.34778 * 120.00102 * 41.17610 * 10 9 8 13 13 C 1.46506 * 120.00003 * 356.21991 * 12 10 9 14 14 C 1.46501 * 120.00184 * 176.22452 * 12 10 9 15 15 H 1.09008 * 110.63684 * 1.68683 * 14 12 10 16 16 C 1.55156 * 110.87434 * 124.93083 * 14 12 10 17 17 C 1.55131 * 101.48035 * 82.76952 * 16 14 12 18 18 N 1.47424 * 104.72601 * 37.29570 * 17 16 14 19 19 C 1.36934 * 125.64922 * 155.81608 * 18 17 16 20 20 H 1.07998 * 120.00286 * 192.95273 * 19 18 17 21 21 C 1.38817 * 120.00012 * 12.67686 * 19 18 17 22 22 N 1.31616 * 119.99850 * 359.17373 * 21 19 18 23 23 Si 1.86793 * 120.00080 * 179.16980 * 21 19 18 24 24 H 1.48499 * 109.47231 * 94.98653 * 23 21 19 25 25 H 1.48501 * 109.47352 * 214.98911 * 23 21 19 26 26 H 1.48511 * 109.47129 * 334.98621 * 23 21 19 27 27 C 1.47022 * 108.70158 * 335.55076 * 18 17 16 28 28 C 1.39795 * 119.86573 * 0.27273 * 9 8 7 29 29 C 1.37607 * 119.92658 * 359.42244 * 28 9 8 30 30 H 1.09000 * 109.47198 * 299.99590 * 1 2 3 31 31 H 1.09004 * 109.47141 * 59.99567 * 1 2 3 32 32 H 1.09002 * 109.46861 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47198 * 240.00410 * 2 1 3 34 34 H 1.08991 * 109.47345 * 119.99830 * 2 1 3 35 35 H 1.09000 * 109.46834 * 60.00187 * 3 2 1 36 36 H 1.08998 * 109.47406 * 300.00580 * 3 2 1 37 37 H 1.08997 * 109.47854 * 270.00201 * 5 4 3 38 38 H 1.08999 * 109.47012 * 30.00399 * 5 4 3 39 39 H 1.09007 * 109.46952 * 149.99931 * 5 4 3 40 40 H 1.07996 * 119.96885 * 0.02562 * 7 6 4 41 41 H 1.07994 * 120.03602 * 180.02562 * 8 7 6 42 42 H 1.09001 * 109.47323 * 269.68875 * 13 12 10 43 43 H 1.08998 * 109.47051 * 29.68888 * 13 12 10 44 44 H 1.08997 * 109.46835 * 149.68621 * 13 12 10 45 45 H 1.08994 * 111.00277 * 201.00272 * 16 14 12 46 46 H 1.08998 * 111.00379 * 324.86066 * 16 14 12 47 47 H 1.09000 * 110.49983 * 278.44846 * 17 16 14 48 48 H 1.09005 * 110.34126 * 156.05956 * 17 16 14 49 49 H 0.96998 * 119.99887 * 180.02562 * 22 21 19 50 50 H 1.08999 * 109.87940 * 120.70306 * 27 18 17 51 51 H 1.09003 * 109.88490 * 241.87348 * 27 18 17 52 52 H 1.08005 * 120.03313 * 179.72913 * 28 9 8 53 53 H 1.08000 * 119.96075 * 180.29590 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.2369 1.4428 1.2696 6 6 4.2006 1.4425 -1.2033 7 6 5.5928 1.4431 -1.2010 8 6 6.2843 1.4425 -2.3908 9 6 5.5872 1.4418 -3.6026 10 6 6.3253 1.4406 -4.8799 11 8 5.9435 2.1334 -5.8033 12 7 7.4229 0.6716 -5.0233 13 6 7.9309 -0.0992 -3.8857 14 6 8.1079 0.6066 -6.3166 15 1 7.6214 1.2584 -7.0423 16 6 9.6077 0.9749 -6.1669 17 6 10.2122 -0.3757 -5.7009 18 7 9.4662 -1.4000 -6.4542 19 6 9.9143 -2.6607 -6.7457 20 1 9.3927 -3.2645 -7.4735 21 6 11.0426 -3.1605 -6.1098 22 7 11.6909 -2.4167 -5.2389 23 14 11.6404 -4.8888 -6.4903 24 1 12.6912 -4.8297 -7.5379 25 1 12.2026 -5.5004 -5.2593 26 1 10.5027 -5.7105 -6.9761 27 6 8.1587 -0.8460 -6.8351 28 6 4.1892 1.4476 -3.6015 29 6 3.5036 1.4418 -2.4084 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9565 -0.8899 37 1 4.4185 2.4705 1.5843 38 1 3.6476 0.9291 2.0291 39 1 5.1894 0.9289 1.1398 40 1 6.1308 1.4432 -0.2646 41 1 7.3642 1.4425 -2.3885 42 1 8.6532 0.5017 -3.3331 43 1 7.1029 -0.3667 -3.2292 44 1 8.4146 -1.0061 -4.2484 45 1 10.0305 1.2872 -7.1217 46 1 9.7470 1.7456 -5.4089 47 1 10.0649 -0.5103 -4.6293 48 1 11.2731 -0.4211 -5.9474 49 1 12.4795 -2.7658 -4.7949 50 1 8.0537 -0.8562 -7.9200 51 1 7.3607 -1.4310 -6.3778 52 1 3.6479 1.4515 -4.5361 53 1 2.4236 1.4414 -2.4069 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033708746.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:20 Heat of formation + Delta-G solvation = 24.019616 kcal Electronic energy + Delta-G solvation = -30772.595611 eV Core-core repulsion = 26837.934973 eV Total energy + Delta-G solvation = -3934.660638 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.60124 -40.36619 -38.98296 -37.47520 -35.97006 -34.39990 -33.96914 -32.09957 -31.32469 -30.63653 -29.55248 -28.36998 -27.71409 -26.58959 -25.77145 -23.48634 -23.38864 -22.18282 -22.06932 -21.33995 -20.20967 -18.92375 -18.60049 -18.14075 -17.42625 -16.97623 -16.69675 -16.17253 -16.03807 -15.79929 -15.67949 -15.56631 -15.14062 -14.88601 -14.58274 -14.44973 -14.26827 -13.96459 -13.77249 -13.63903 -13.50575 -13.28947 -13.24554 -13.10910 -13.02932 -12.89843 -12.79132 -12.70588 -12.64927 -12.40553 -12.19997 -12.02425 -11.92663 -11.85448 -11.70364 -11.53965 -11.51318 -10.90593 -10.67738 -10.59412 -9.92055 -9.64209 -8.80804 -8.24149 -7.84314 -5.21514 0.20088 0.50215 1.48463 1.48723 1.58176 1.76702 2.04282 2.16639 2.50780 2.91065 3.34133 3.57915 3.74546 3.81127 3.89174 3.93126 4.01296 4.06061 4.10291 4.27998 4.29978 4.31303 4.41375 4.46889 4.48347 4.60482 4.62392 4.64442 4.67679 4.68895 4.73164 4.75761 4.90546 4.92955 4.93899 4.96395 5.03035 5.08211 5.12644 5.21095 5.22418 5.26294 5.33407 5.44400 5.48413 5.50955 5.61934 5.67118 5.78143 5.80717 6.24630 6.31809 6.44949 6.49247 7.11805 7.15810 7.76720 8.44449 9.25587 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.013877 B = 0.002400 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.267236 B =11666.180261 C =12415.449704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.140 4.140 3 C 0.116 3.884 4 N -0.625 5.625 5 C 0.083 3.917 6 C 0.239 3.761 7 C -0.209 4.209 8 C -0.038 4.038 9 C -0.213 4.213 10 C 0.562 3.438 11 O -0.589 6.589 12 N -0.591 5.591 13 C 0.078 3.922 14 C 0.137 3.863 15 H 0.102 0.898 16 C -0.141 4.141 17 C 0.173 3.827 18 N -0.618 5.618 19 C -0.243 4.243 20 H 0.073 0.927 21 C -0.055 4.055 22 N -0.942 5.942 23 Si 0.975 3.025 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.273 1.273 27 C 0.129 3.871 28 C -0.026 4.026 29 C -0.208 4.208 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.149 0.851 41 H 0.137 0.863 42 H 0.068 0.932 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.026 0.974 48 H 0.040 0.960 49 H 0.249 0.751 50 H 0.034 0.966 51 H 0.020 0.980 52 H 0.121 0.879 53 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.598 9.248 16.807 27.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C -0.006 4.006 4 N -0.332 5.332 5 C -0.059 4.059 6 C 0.133 3.867 7 C -0.231 4.231 8 C -0.058 4.058 9 C -0.218 4.218 10 C 0.353 3.647 11 O -0.471 6.471 12 N -0.321 5.321 13 C -0.065 4.065 14 C 0.032 3.968 15 H 0.120 0.880 16 C -0.181 4.181 17 C 0.048 3.952 18 N -0.345 5.345 19 C -0.372 4.372 20 H 0.091 0.909 21 C -0.249 4.249 22 N -0.590 5.590 23 Si 0.803 3.197 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.198 1.198 27 C 0.003 3.997 28 C -0.046 4.046 29 C -0.230 4.230 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.166 0.834 41 H 0.155 0.845 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.084 0.916 45 H 0.096 0.904 46 H 0.099 0.901 47 H 0.044 0.956 48 H 0.058 0.942 49 H 0.058 0.942 50 H 0.052 0.948 51 H 0.038 0.962 52 H 0.139 0.861 53 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -19.734 9.457 16.603 27.469 hybrid contribution 0.769 -1.153 -0.536 1.486 sum -18.965 8.304 16.067 26.207 Atomic orbital electron populations 1.21691 0.94218 1.02196 1.02525 1.21920 0.96810 0.97193 1.01965 1.21706 0.78142 0.96877 1.03880 1.46657 1.05712 1.77736 1.03144 1.21870 0.97656 1.02173 0.84228 1.18113 0.91420 0.90587 0.86550 1.20810 0.92217 1.11293 0.98766 1.21365 1.00451 0.93183 0.90752 1.19471 0.94541 1.15662 0.92151 1.18782 0.79490 0.78297 0.88090 1.90690 1.68945 1.43646 1.43789 1.47726 1.27366 1.45194 1.11800 1.22249 0.99680 0.96325 0.88199 1.21889 0.93439 0.96222 0.85215 0.88050 1.23260 0.94055 0.98610 1.02141 1.21531 0.95240 0.84304 0.94082 1.44696 1.13239 1.11745 1.64790 1.19318 1.09400 0.90588 1.17933 0.90898 1.25591 0.99130 1.01722 0.98436 1.70102 1.20687 1.36881 1.31321 0.85124 0.77978 0.79908 0.76648 1.21569 1.21765 1.19771 1.21688 0.88245 0.92604 0.97204 1.20911 0.91999 0.93166 0.98483 1.20696 1.00475 1.11659 0.90177 0.91549 0.92332 0.92616 0.93207 0.91855 0.88796 0.90365 0.92277 0.89823 0.90893 0.83361 0.84526 0.91327 0.89591 0.91602 0.90417 0.90099 0.95619 0.94194 0.94171 0.94785 0.96177 0.86058 0.83877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 71.98 0.71 -0.48 16 2 C -0.14 -1.46 6.26 30.60 0.19 -1.27 16 3 C 0.12 1.16 5.14 86.38 0.44 1.60 16 4 N -0.63 -8.45 2.99 -722.20 -2.16 -10.61 16 5 C 0.08 0.75 10.17 127.77 1.30 2.05 16 6 C 0.24 4.55 6.55 38.47 0.25 4.81 16 7 C -0.21 -4.14 9.18 22.36 0.21 -3.94 16 8 C -0.04 -0.93 7.50 22.50 0.17 -0.76 16 9 C -0.21 -6.26 5.16 -20.07 -0.10 -6.37 16 10 C 0.56 20.17 7.32 86.69 0.63 20.80 16 11 O -0.59 -24.63 16.31 -4.00 -0.07 -24.69 16 12 N -0.59 -21.13 2.83 -819.69 -2.32 -23.44 16 13 C 0.08 2.57 7.01 127.77 0.90 3.47 16 14 C 0.14 5.29 3.57 46.18 0.16 5.45 16 15 H 0.10 3.94 6.99 -2.38 -0.02 3.92 16 16 C -0.14 -5.45 6.55 32.06 0.21 -5.24 16 17 C 0.17 8.25 4.58 86.93 0.40 8.65 16 18 N -0.62 -31.61 2.98 -691.53 -2.06 -33.67 16 19 C -0.24 -13.60 10.24 84.04 0.86 -12.73 16 20 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 21 C -0.05 -3.06 5.48 84.86 0.46 -2.60 16 22 N -0.94 -54.54 10.48 21.65 0.23 -54.32 16 23 Si 0.97 45.24 29.55 68.60 2.03 47.27 16 24 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 25 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 26 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 27 C 0.13 5.66 6.24 86.73 0.54 6.20 16 28 C -0.03 -0.68 9.63 22.50 0.22 -0.46 16 29 C -0.21 -4.32 9.18 22.36 0.21 -4.11 16 30 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 32 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 35 H 0.09 0.60 8.07 -2.39 -0.02 0.58 16 36 H 0.08 0.80 6.17 -2.39 -0.01 0.79 16 37 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.08 0.49 8.07 -2.39 -0.02 0.47 16 39 H 0.07 0.67 6.17 -2.38 -0.01 0.65 16 40 H 0.15 2.22 6.11 -2.91 -0.02 2.21 16 41 H 0.14 3.14 5.67 -2.91 -0.02 3.12 16 42 H 0.07 2.04 7.01 -2.39 -0.02 2.02 16 43 H 0.09 2.51 5.60 -2.39 -0.01 2.49 16 44 H 0.07 2.71 5.22 -2.39 -0.01 2.69 16 45 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 46 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 47 H 0.03 1.27 5.49 -2.39 -0.01 1.25 16 48 H 0.04 2.18 6.76 -2.38 -0.02 2.16 16 49 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 50 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 51 H 0.02 0.92 8.04 -2.39 -0.02 0.90 16 52 H 0.12 3.23 8.06 -2.91 -0.02 3.20 16 53 H 0.14 2.35 6.11 -2.91 -0.02 2.33 16 Total: -1.00 -69.32 405.11 4.32 -65.00 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.90 Total: 19.40 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 7.76 Total: 15.07 kcal Atomic # 7 Polarization: -115.73 SS G_CDS: -6.31 Total: -122.04 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.07 Total: -24.69 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -69.32 4.32 -65.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033708746.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.021 kcal (2) G-P(sol) polarization free energy of solvation -69.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds