Wall clock time and date at job start Wed Apr 1 2020 02:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47379 * 2 1 4 4 C 1.53001 * 109.47016 * 119.99841 * 2 1 3 5 5 C 1.50706 * 109.46943 * 174.99704 * 4 2 1 6 6 C 1.35449 * 126.06971 * 269.95788 * 5 4 2 7 7 N 1.35538 * 108.86834 * 179.76809 * 6 5 4 8 8 H 0.97000 * 125.67553 * 180.30905 * 7 6 5 9 9 C 1.37645 * 108.64548 * 0.43607 * 7 6 5 10 10 C 1.46680 * 126.23405 * 179.82698 * 9 7 6 11 11 O 1.21693 * 120.00118 * 155.53021 * 10 9 7 12 12 N 1.34779 * 119.99807 * 335.53047 * 10 9 7 13 13 C 1.46885 * 120.46536 * 352.91802 * 12 10 9 14 14 C 1.52858 * 109.01304 * 235.48508 * 13 12 10 15 15 C 1.52675 * 109.17774 * 307.81796 * 14 13 12 16 16 C 1.53483 * 113.62543 * 188.99921 * 15 14 13 17 17 N 1.47669 * 85.98863 * 137.70224 * 16 15 14 18 18 C 1.36932 * 134.45341 * 155.71366 * 17 16 15 19 19 H 1.08008 * 119.99907 * 179.97438 * 18 17 16 20 20 C 1.38811 * 120.00492 * 359.95289 * 18 17 16 21 21 N 1.31624 * 119.99281 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00401 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47088 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47264 * 119.99920 * 22 20 18 25 25 H 1.48493 * 109.47328 * 239.99996 * 22 20 18 26 26 C 1.47665 * 91.08568 * 335.68296 * 17 16 15 27 27 C 1.52671 * 113.18499 * 57.46359 * 15 14 13 28 28 C 1.46882 * 120.46326 * 173.18665 * 12 10 9 29 29 C 1.37873 * 107.53334 * 359.57059 * 9 7 6 30 30 H 1.09005 * 109.46894 * 300.00452 * 1 2 3 31 31 H 1.08997 * 109.47092 * 59.99987 * 1 2 3 32 32 H 1.08997 * 109.47366 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47258 * 239.99829 * 2 1 3 34 34 H 1.09000 * 109.47065 * 59.99710 * 3 2 1 35 35 H 1.08996 * 109.47252 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.47020 * 300.00599 * 3 2 1 37 37 H 1.09003 * 109.47242 * 55.00395 * 4 2 1 38 38 H 1.08992 * 109.47565 * 294.99745 * 4 2 1 39 39 H 1.07995 * 125.56552 * 0.02562 * 6 5 4 40 40 H 1.08998 * 109.58879 * 355.30320 * 13 12 10 41 41 H 1.08996 * 109.59227 * 115.75052 * 13 12 10 42 42 H 1.09001 * 109.60870 * 187.84045 * 14 13 12 43 43 H 1.08998 * 109.45100 * 67.69615 * 14 13 12 44 44 H 1.08991 * 113.78839 * 251.97425 * 16 15 14 45 45 H 1.09005 * 113.78536 * 23.43725 * 16 15 14 46 46 H 0.97007 * 119.99543 * 179.97438 * 21 20 18 47 47 H 1.09003 * 113.78734 * 270.04277 * 26 17 16 48 48 H 1.09002 * 113.79130 * 138.57969 * 26 17 16 49 49 H 1.08998 * 109.52882 * 182.52368 * 27 15 14 50 50 H 1.08997 * 109.59013 * 62.33122 * 27 15 14 51 51 H 1.09000 * 109.59319 * 244.25659 * 28 12 10 52 52 H 1.08999 * 109.58743 * 4.69424 * 28 12 10 53 53 H 1.08005 * 126.45371 * 180.22333 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.8294 1.1889 6 6 4.2467 -1.8475 0.6399 7 7 5.5700 -1.5863 0.7727 8 1 6.2926 -2.1530 0.4605 9 6 5.7177 -0.3843 1.4269 10 6 6.9871 0.2632 1.7747 11 8 7.0316 1.4689 1.9341 12 7 8.1042 -0.4771 1.9177 13 6 8.0353 -1.9439 1.8813 14 6 8.6568 -2.5035 3.1608 15 6 10.0465 -1.9000 3.3489 16 6 10.8522 -2.5519 4.4810 17 7 12.0024 -2.4920 3.5569 18 6 13.3619 -2.4659 3.7184 19 1 14.0077 -2.4203 2.8538 20 6 13.9103 -2.4977 4.9933 21 7 13.1232 -2.5534 6.0468 22 14 15.7648 -2.4615 5.2136 23 1 16.4203 -2.3986 3.8826 24 1 16.1456 -1.2668 6.0092 25 1 16.2030 -3.6896 5.9241 26 6 11.0991 -2.4721 2.3890 27 6 10.0367 -0.3743 3.4052 28 6 9.4068 0.1714 2.1180 29 6 4.4552 0.1031 1.6905 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9564 -0.8899 37 1 1.6054 -1.7198 1.2952 38 1 1.7517 -0.1583 2.1370 39 1 3.8233 -2.7224 0.1691 40 1 6.9941 -2.2593 1.8146 41 1 8.5878 -2.3144 1.0179 42 1 8.7378 -3.5878 3.0842 43 1 8.0286 -2.2443 4.0129 44 1 10.9627 -1.9201 5.3622 45 1 10.5327 -3.5663 4.7202 46 1 13.5064 -2.5760 6.9377 47 1 10.8531 -3.4628 2.0065 48 1 11.4058 -1.7768 1.6076 49 1 11.0587 -0.0064 3.4951 50 1 9.4534 -0.0441 4.2647 51 1 10.0579 -0.0469 1.2715 52 1 9.2687 1.2490 2.2071 53 1 4.2167 1.0301 2.1907 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035837167.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:48 Heat of formation + Delta-G solvation = 43.790927 kcal Electronic energy + Delta-G solvation = -30765.277192 eV Core-core repulsion = 26831.473902 eV Total energy + Delta-G solvation = -3933.803290 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.57647 -41.22971 -39.81730 -37.32289 -37.04847 -34.45459 -32.90371 -32.14093 -31.91992 -30.44089 -28.70125 -27.87662 -27.17924 -26.75121 -25.42853 -24.53112 -23.47716 -22.29514 -21.53117 -20.94714 -20.20536 -19.28606 -18.70934 -18.21339 -17.41958 -16.87397 -16.65891 -16.47376 -16.14834 -15.70559 -15.64175 -15.30796 -15.12198 -14.89922 -14.71326 -14.51327 -14.38459 -14.09626 -14.00697 -13.70154 -13.54991 -13.51851 -13.17425 -12.99929 -12.94717 -12.86610 -12.74042 -12.66469 -12.30790 -12.19666 -12.15150 -11.73416 -11.67617 -11.60355 -11.58446 -11.38025 -11.31129 -11.10623 -10.94087 -10.83289 -9.79781 -9.61591 -8.99280 -8.88164 -7.89985 -5.21880 0.53593 1.43464 1.44191 1.54134 1.76638 1.86316 2.14166 2.45798 2.47746 3.30737 3.39863 3.51718 3.59937 3.82647 3.95407 4.09225 4.10987 4.13230 4.23057 4.26254 4.34273 4.37547 4.46936 4.48632 4.57066 4.60501 4.69654 4.71892 4.82361 4.87676 4.89336 4.91687 4.94784 4.98869 5.09161 5.11459 5.13646 5.16749 5.20427 5.22119 5.28221 5.29919 5.35124 5.41026 5.47484 5.57289 5.58462 5.63621 5.72323 5.89657 5.96205 6.01705 6.34777 6.59337 6.93385 7.04526 7.62761 8.59405 9.27028 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.033712 B = 0.002007 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.360007 B =13945.936414 C =14247.266713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 C -0.148 4.148 4 C -0.038 4.038 5 C -0.184 4.184 6 C 0.042 3.958 7 N -0.529 5.529 8 H 0.432 0.568 9 C -0.072 4.072 10 C 0.584 3.416 11 O -0.580 6.580 12 N -0.603 5.603 13 C 0.096 3.904 14 C -0.110 4.110 15 C -0.082 4.082 16 C 0.167 3.833 17 N -0.639 5.639 18 C -0.226 4.226 19 H 0.083 0.917 20 C -0.070 4.070 21 N -0.955 5.955 22 Si 0.974 3.026 23 H -0.264 1.264 24 H -0.295 1.295 25 H -0.294 1.294 26 C 0.131 3.869 27 C -0.090 4.090 28 C 0.125 3.875 29 C -0.115 4.115 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.043 0.957 36 H 0.051 0.949 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.210 0.790 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.060 0.940 44 H 0.031 0.969 45 H 0.017 0.983 46 H 0.246 0.754 47 H 0.054 0.946 48 H 0.052 0.948 49 H 0.057 0.943 50 H 0.050 0.950 51 H 0.084 0.916 52 H 0.079 0.921 53 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.485 -1.092 -15.469 29.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.106 4.106 3 C -0.205 4.205 4 C -0.076 4.076 5 C -0.190 4.190 6 C -0.094 4.094 7 N -0.130 5.130 8 H 0.277 0.723 9 C -0.184 4.184 10 C 0.375 3.625 11 O -0.461 6.461 12 N -0.335 5.335 13 C -0.026 4.026 14 C -0.149 4.149 15 C -0.083 4.083 16 C 0.042 3.958 17 N -0.365 5.365 18 C -0.355 4.355 19 H 0.101 0.899 20 C -0.263 4.263 21 N -0.605 5.605 22 Si 0.803 3.197 23 H -0.188 1.188 24 H -0.223 1.223 25 H -0.221 1.221 26 C 0.007 3.993 27 C -0.129 4.129 28 C 0.003 3.997 29 C -0.142 4.142 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.226 0.774 40 H 0.126 0.874 41 H 0.116 0.884 42 H 0.113 0.887 43 H 0.079 0.921 44 H 0.050 0.950 45 H 0.035 0.965 46 H 0.055 0.945 47 H 0.072 0.928 48 H 0.070 0.930 49 H 0.076 0.924 50 H 0.068 0.932 51 H 0.102 0.898 52 H 0.097 0.903 53 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -24.947 -0.542 -15.305 29.273 hybrid contribution 1.972 -0.002 0.933 2.182 sum -22.974 -0.544 -14.372 27.105 Atomic orbital electron populations 1.21835 0.94537 1.02239 1.01684 1.21070 0.95671 0.95633 0.98193 1.21862 1.00690 0.96820 1.01159 1.20041 0.88503 1.01417 0.97654 1.19587 0.96220 0.96097 1.07061 1.22490 0.81655 1.01701 1.03554 1.42605 1.08913 1.16837 1.44686 0.72334 1.19951 0.93852 0.91892 1.12722 1.17564 0.82712 0.85864 0.76396 1.90788 1.85479 1.15691 1.54123 1.48067 1.06758 1.07729 1.70922 1.22252 1.03170 0.77859 0.99300 1.21674 0.94234 1.01138 0.97886 1.22089 0.93975 0.94824 0.97431 1.22170 0.84444 0.95686 0.93537 1.46318 1.00520 1.85855 1.03823 1.19440 0.81845 1.41678 0.92543 0.89940 1.25579 1.01972 1.03469 0.95289 1.70027 1.34495 1.58649 0.97291 0.85066 0.80233 0.76550 0.77861 1.18844 1.22268 1.22091 1.22782 0.87779 0.97866 0.90885 1.21356 1.00127 0.94148 0.97232 1.21510 0.82901 0.97838 0.97448 1.21231 0.90381 0.99921 1.02717 0.92914 0.92767 0.91698 0.91097 0.93225 0.93801 0.93026 0.89572 0.92033 0.77362 0.87428 0.88400 0.88728 0.92123 0.95049 0.96489 0.94517 0.92829 0.92976 0.92423 0.93151 0.89820 0.90302 0.85576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.19 71.98 0.66 -0.68 16 2 C -0.09 -1.01 2.91 -10.79 -0.03 -1.04 16 3 C -0.15 -2.25 8.92 71.98 0.64 -1.61 16 4 C -0.04 -0.46 5.18 29.85 0.15 -0.30 16 5 C -0.18 -2.87 4.78 -20.12 -0.10 -2.97 16 6 C 0.04 0.47 11.80 83.48 0.99 1.45 16 7 N -0.53 -7.26 4.74 -183.63 -0.87 -8.13 16 8 H 0.43 3.75 6.46 -92.71 -0.60 3.15 16 9 C -0.07 -1.62 6.36 40.35 0.26 -1.37 16 10 C 0.58 16.93 7.61 86.45 0.66 17.59 16 11 O -0.58 -21.64 16.37 -4.33 -0.07 -21.71 16 12 N -0.60 -15.37 2.95 -824.18 -2.43 -17.80 16 13 C 0.10 1.79 5.23 86.26 0.45 2.24 16 14 C -0.11 -2.72 5.24 30.44 0.16 -2.56 16 15 C -0.08 -2.79 0.77 -52.03 -0.04 -2.84 16 16 C 0.17 7.80 6.64 86.31 0.57 8.37 16 17 N -0.64 -31.84 3.53 -722.64 -2.55 -34.40 16 18 C -0.23 -12.61 10.70 84.03 0.90 -11.71 16 19 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 20 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 21 N -0.95 -58.45 11.39 21.65 0.25 -58.20 16 22 Si 0.97 46.26 29.55 68.60 2.03 48.28 16 23 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 24 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 25 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 26 C 0.13 4.78 7.72 86.32 0.67 5.44 16 27 C -0.09 -3.15 5.22 30.60 0.16 -2.99 16 28 C 0.13 3.65 6.31 86.42 0.54 4.19 16 29 C -0.12 -2.58 9.34 22.57 0.21 -2.37 16 30 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.04 0.84 6.42 -2.39 -0.02 0.82 16 36 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.09 0.70 8.14 -2.39 -0.02 0.69 16 38 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.21 0.58 8.06 -2.91 -0.02 0.55 16 40 H 0.11 1.51 4.12 -2.39 -0.01 1.50 16 41 H 0.10 1.40 8.07 -2.39 -0.02 1.38 16 42 H 0.09 2.06 8.12 -2.39 -0.02 2.04 16 43 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.03 1.70 7.12 -2.39 -0.02 1.69 16 45 H 0.02 0.82 8.09 -2.38 -0.02 0.80 16 46 H 0.25 14.68 8.31 -92.70 -0.77 13.91 16 47 H 0.05 1.76 8.07 -2.39 -0.02 1.74 16 48 H 0.05 1.79 7.41 -2.39 -0.02 1.77 16 49 H 0.06 2.35 8.01 -2.39 -0.02 2.34 16 50 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 51 H 0.08 2.20 7.49 -2.39 -0.02 2.18 16 52 H 0.08 2.51 6.97 -2.39 -0.02 2.49 16 53 H 0.13 3.14 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -75.96 409.32 3.97 -71.99 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.30 Total: 14.69 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: 7.32 Total: 5.28 kcal Atomic # 7 Polarization: -112.92 SS G_CDS: -5.61 Total: -118.53 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.07 Total: -21.71 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.28 kcal Total: -75.96 3.97 -71.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035837167.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.783 kcal (2) G-P(sol) polarization free energy of solvation -75.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds