Wall clock time and date at job start Wed Apr 1 2020 02:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47049 * 2 1 4 4 C 1.53003 * 109.46898 * 119.99354 * 2 1 3 5 5 C 1.50697 * 109.46924 * 65.00223 * 4 2 1 6 6 C 1.35448 * 126.06942 * 269.97737 * 5 4 2 7 7 N 1.35531 * 108.87362 * 179.78915 * 6 5 4 8 8 H 0.97006 * 125.68002 * 180.26088 * 7 6 5 9 9 C 1.37649 * 108.64647 * 0.37270 * 7 6 5 10 10 C 1.46675 * 126.23796 * 179.89268 * 9 7 6 11 11 O 1.21694 * 120.00360 * 157.49180 * 10 9 7 12 12 N 1.34780 * 119.99791 * 337.48470 * 10 9 7 13 13 C 1.46592 * 119.68302 * 353.36397 * 12 10 9 14 14 C 1.53958 * 110.57587 * 227.79904 * 13 12 10 15 15 C 1.51517 * 107.34932 * 308.94671 * 14 13 12 16 16 H 1.09001 * 109.27769 * 306.30049 * 15 14 13 17 17 C 1.55366 * 107.78596 * 64.85561 * 15 14 13 18 18 H 1.08998 * 111.51275 * 50.61881 * 17 15 14 19 19 C 1.53750 * 100.21684 * 168.51538 * 17 15 14 20 20 C 1.55286 * 101.87313 * 320.88992 * 19 17 15 21 21 N 1.45463 * 116.87030 * 181.60642 * 15 14 13 22 22 C 1.36932 * 126.40496 * 30.88014 * 21 15 14 23 23 H 1.08000 * 120.00210 * 0.02562 * 22 21 15 24 24 C 1.38818 * 120.00114 * 180.02562 * 22 21 15 25 25 N 1.31616 * 119.99831 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99940 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47168 * 59.99995 * 26 24 22 28 28 H 1.48503 * 109.46866 * 179.97438 * 26 24 22 29 29 H 1.48490 * 109.47240 * 299.99634 * 26 24 22 30 30 C 1.48917 * 119.82087 * 173.02434 * 12 10 9 31 31 C 1.37881 * 107.53101 * 359.63128 * 9 7 6 32 32 H 1.09010 * 109.46997 * 60.00179 * 1 2 3 33 33 H 1.08998 * 109.47168 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47495 * 300.00409 * 1 2 3 35 35 H 1.08999 * 109.47495 * 239.99591 * 2 1 3 36 36 H 1.09003 * 109.46889 * 180.02562 * 3 2 1 37 37 H 1.09003 * 109.46624 * 299.99318 * 3 2 1 38 38 H 1.08992 * 109.47383 * 59.99844 * 3 2 1 39 39 H 1.08992 * 109.47171 * 305.00104 * 4 2 1 40 40 H 1.09001 * 109.46654 * 185.00006 * 4 2 1 41 41 H 1.07999 * 125.56529 * 0.04893 * 6 5 4 42 42 H 1.09003 * 109.25762 * 107.51937 * 13 12 10 43 43 H 1.09000 * 109.26012 * 348.08222 * 13 12 10 44 44 H 1.09000 * 109.87923 * 189.48640 * 14 13 12 45 45 H 1.08999 * 109.94179 * 68.44483 * 14 13 12 46 46 H 1.09004 * 110.95106 * 79.04706 * 19 17 15 47 47 H 1.08997 * 110.95530 * 202.72888 * 19 17 15 48 48 H 1.09001 * 109.91337 * 141.85033 * 20 19 17 49 49 H 1.09003 * 109.91800 * 263.14479 * 20 19 17 50 50 H 0.96999 * 119.99928 * 180.02562 * 25 24 22 51 51 H 1.08993 * 109.91768 * 8.97096 * 30 12 10 52 52 H 1.09003 * 110.80210 * 247.01684 * 30 12 10 53 53 H 1.07998 * 126.45793 * 180.26667 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.6412 -2.1732 1.1891 6 6 0.4949 -2.7063 1.6753 7 7 0.4926 -4.0391 1.4297 8 1 -0.2143 -4.6578 1.6718 9 6 1.6614 -4.3693 0.7819 10 6 2.0575 -5.7098 0.3375 11 8 2.8752 -5.8383 -0.5545 12 7 1.5158 -6.7994 0.9172 13 6 0.6445 -6.6426 2.0856 14 6 1.0515 -7.6242 3.1996 15 6 1.1347 -9.0036 2.5782 16 1 0.1968 -9.2263 2.0694 17 6 2.2887 -8.9866 1.5380 18 1 3.2071 -8.5853 1.9664 19 6 2.4178 -10.4913 1.2494 20 6 2.2127 -11.1061 2.6605 21 7 1.4727 -10.1053 3.4659 22 6 1.1654 -10.2001 4.7969 23 1 0.6191 -9.4053 5.2830 24 6 1.5561 -11.3178 5.5216 25 7 2.2215 -12.2866 4.9292 26 14 1.1363 -11.4474 7.3372 27 1 -0.3383 -11.4063 7.5084 28 1 1.6612 -12.7277 7.8764 29 1 1.7516 -10.3119 8.0699 30 6 1.8000 -8.1519 0.3625 31 6 2.3894 -3.2094 0.6216 32 1 -0.3633 0.5139 -0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3634 0.5139 0.8899 35 1 1.8934 -0.5139 -0.8899 36 1 3.1300 1.4425 -0.0005 37 1 1.6767 1.9563 -0.8901 38 1 1.6767 1.9564 0.8899 39 1 1.6053 -0.2616 2.1370 40 1 3.1262 -0.6442 1.2952 41 1 -0.2911 -2.1580 2.1733 42 1 -0.3873 -6.8382 1.7935 43 1 0.7243 -5.6217 2.4592 44 1 0.3016 -7.6187 3.9907 45 1 2.0222 -7.3421 3.6074 46 1 1.6400 -10.8244 0.5622 47 1 3.4074 -10.7300 0.8601 48 1 1.6319 -12.0252 2.5843 49 1 3.1796 -11.3117 3.1201 50 1 2.4942 -13.0678 5.4354 51 1 2.5779 -8.0853 -0.3981 52 1 0.8981 -8.5939 -0.0610 53 1 3.3550 -3.1182 0.1466 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036871013.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:50 Heat of formation + Delta-G solvation = 20.897010 kcal Electronic energy + Delta-G solvation = -30941.128443 eV Core-core repulsion = 27006.332398 eV Total energy + Delta-G solvation = -3934.796045 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.60104 -41.02518 -39.50796 -37.26688 -36.82219 -34.60572 -33.09624 -32.50447 -31.56948 -30.44718 -29.62806 -27.88950 -27.12697 -26.77657 -25.39788 -23.88323 -22.89619 -21.91746 -21.34161 -21.19837 -20.88774 -20.07215 -18.77080 -18.14259 -17.41493 -17.05406 -16.61991 -16.53104 -15.99225 -15.77555 -15.73101 -15.28327 -15.08723 -14.76937 -14.61359 -14.39672 -14.33551 -14.30029 -13.97383 -13.90317 -13.51736 -13.34861 -13.14514 -13.11068 -12.96681 -12.71289 -12.66370 -12.53394 -12.31021 -12.20083 -12.06615 -11.81954 -11.74636 -11.62062 -11.59344 -11.53592 -11.38848 -11.14740 -11.00026 -10.70814 -9.90684 -9.66378 -9.02437 -8.88548 -7.83800 -5.18475 0.49812 1.45258 1.48209 1.54171 1.72143 1.79031 2.13037 2.41072 2.50609 3.34629 3.38681 3.55532 3.70217 3.85192 3.97350 4.05931 4.10326 4.13327 4.14791 4.24678 4.30263 4.32624 4.39465 4.44338 4.56854 4.58866 4.64735 4.70265 4.75272 4.81655 4.85040 4.91243 4.93516 4.97160 5.05237 5.09346 5.12388 5.15611 5.19465 5.20653 5.31519 5.39258 5.41537 5.49700 5.51042 5.57086 5.63455 5.64799 5.75238 5.85562 5.98932 6.19568 6.28938 6.54751 7.00723 7.08092 7.78598 8.47578 9.27899 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.017898 B = 0.002343 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.071256 B =11945.855509 C =13018.682131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 C -0.146 4.146 4 C -0.038 4.038 5 C -0.182 4.182 6 C 0.042 3.958 7 N -0.530 5.530 8 H 0.431 0.569 9 C -0.072 4.072 10 C 0.584 3.416 11 O -0.577 6.577 12 N -0.609 5.609 13 C 0.102 3.898 14 C -0.121 4.121 15 C 0.158 3.842 16 H 0.030 0.970 17 C -0.110 4.110 18 H 0.057 0.943 19 C -0.122 4.122 20 C 0.182 3.818 21 N -0.615 5.615 22 C -0.230 4.230 23 H 0.089 0.911 24 C -0.072 4.072 25 N -0.954 5.954 26 Si 0.975 3.025 27 H -0.274 1.274 28 H -0.300 1.300 29 H -0.278 1.278 30 C 0.137 3.863 31 C -0.120 4.120 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.207 0.793 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.082 0.918 45 H 0.047 0.953 46 H 0.082 0.918 47 H 0.075 0.925 48 H 0.006 0.994 49 H 0.015 0.985 50 H 0.244 0.756 51 H 0.086 0.914 52 H 0.095 0.905 53 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.153 24.861 -8.843 27.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C -0.203 4.203 4 C -0.076 4.076 5 C -0.187 4.187 6 C -0.095 4.095 7 N -0.132 5.132 8 H 0.276 0.724 9 C -0.185 4.185 10 C 0.374 3.626 11 O -0.457 6.457 12 N -0.341 5.341 13 C -0.021 4.021 14 C -0.160 4.160 15 C 0.051 3.949 16 H 0.047 0.953 17 C -0.131 4.131 18 H 0.075 0.925 19 C -0.161 4.161 20 C 0.057 3.943 21 N -0.340 5.340 22 C -0.359 4.359 23 H 0.107 0.893 24 C -0.265 4.265 25 N -0.604 5.604 26 Si 0.804 3.196 27 H -0.200 1.200 28 H -0.226 1.226 29 H -0.204 1.204 30 C 0.016 3.984 31 C -0.148 4.148 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.223 0.777 42 H 0.115 0.885 43 H 0.122 0.878 44 H 0.100 0.900 45 H 0.066 0.934 46 H 0.100 0.900 47 H 0.094 0.906 48 H 0.025 0.975 49 H 0.033 0.967 50 H 0.054 0.946 51 H 0.105 0.895 52 H 0.113 0.887 53 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.853 24.459 -9.092 26.979 hybrid contribution 0.145 -1.333 1.177 1.784 sum -6.708 23.125 -7.915 25.346 Atomic orbital electron populations 1.21847 0.94721 1.01741 1.01864 1.21066 0.96497 0.95876 0.97610 1.21834 1.00879 0.95483 1.02109 1.20038 1.00567 0.88629 0.98364 1.19583 0.96246 0.96143 1.06766 1.22467 1.00736 0.82704 1.03544 1.42674 1.16473 1.09534 1.44491 0.72420 1.20006 0.92735 0.93814 1.11915 1.17547 0.80213 0.83516 0.81274 1.90779 1.35191 1.86646 1.33080 1.48551 1.49034 1.06341 1.30208 1.22266 0.94396 1.00808 0.84671 1.21780 1.01760 0.94543 0.97898 1.20885 0.95074 0.88251 0.90656 0.95288 1.22468 0.98554 0.95259 0.96803 0.92472 1.22595 1.02228 0.94219 0.97014 1.21317 0.94417 0.90513 0.88080 1.44504 1.65030 1.18372 1.06084 1.19369 1.29061 1.02814 0.84645 0.89338 1.25655 1.01397 0.97006 1.02409 1.70161 1.44744 1.09474 1.35975 0.85192 0.77979 0.76424 0.80004 1.20034 1.22628 1.20402 1.21751 1.01829 0.79817 0.95020 1.21288 1.00134 0.90884 1.02447 0.93274 0.92852 0.91589 0.93033 0.92926 0.92720 0.91829 0.89778 0.91883 0.77658 0.88494 0.87762 0.89992 0.93404 0.89971 0.90632 0.97541 0.96707 0.94632 0.89519 0.88732 0.85223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 8.91 71.98 0.64 -0.91 16 2 C -0.09 -1.17 2.91 -10.79 -0.03 -1.20 16 3 C -0.15 -1.53 9.19 71.98 0.66 -0.86 16 4 C -0.04 -0.51 5.18 29.85 0.15 -0.35 16 5 C -0.18 -3.13 4.82 -20.12 -0.10 -3.23 16 6 C 0.04 0.55 10.43 83.48 0.87 1.42 16 7 N -0.53 -8.41 4.73 -183.62 -0.87 -9.28 16 8 H 0.43 4.81 6.29 -92.70 -0.58 4.23 16 9 C -0.07 -1.75 6.34 40.35 0.26 -1.50 16 10 C 0.58 17.58 7.61 86.45 0.66 18.24 16 11 O -0.58 -21.60 16.35 -4.33 -0.07 -21.67 16 12 N -0.61 -16.49 3.01 -819.56 -2.47 -18.96 16 13 C 0.10 2.23 4.98 86.69 0.43 2.66 16 14 C -0.12 -3.74 5.45 30.43 0.17 -3.57 16 15 C 0.16 5.97 2.57 45.51 0.12 6.09 16 16 H 0.03 1.08 7.93 -2.39 -0.02 1.06 16 17 C -0.11 -3.84 2.84 -9.98 -0.03 -3.87 16 18 H 0.06 2.27 8.12 -2.39 -0.02 2.25 16 19 C -0.12 -4.45 6.53 31.63 0.21 -4.24 16 20 C 0.18 8.97 5.45 86.83 0.47 9.45 16 21 N -0.62 -30.52 3.35 -669.69 -2.24 -32.76 16 22 C -0.23 -12.39 9.86 84.04 0.83 -11.56 16 23 H 0.09 4.43 7.18 -2.91 -0.02 4.41 16 24 C -0.07 -4.06 5.49 84.86 0.47 -3.60 16 25 N -0.95 -57.61 10.44 21.65 0.23 -57.38 16 26 Si 0.98 45.20 29.55 68.60 2.03 47.22 16 27 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 28 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 29 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 30 C 0.14 3.93 6.05 85.66 0.52 4.45 16 31 C -0.12 -2.88 10.66 22.57 0.24 -2.64 16 32 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 33 H 0.05 0.63 6.42 -2.39 -0.02 0.62 16 34 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.21 1.07 8.06 -2.91 -0.02 1.05 16 42 H 0.10 1.60 8.10 -2.39 -0.02 1.58 16 43 H 0.10 1.89 4.40 -2.39 -0.01 1.88 16 44 H 0.08 2.47 7.59 -2.39 -0.02 2.45 16 45 H 0.05 1.69 8.12 -2.39 -0.02 1.67 16 46 H 0.08 2.63 8.12 -2.39 -0.02 2.61 16 47 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 48 H 0.01 0.35 7.77 -2.39 -0.02 0.33 16 49 H 0.01 0.83 7.21 -2.39 -0.02 0.81 16 50 H 0.24 14.50 8.31 -92.71 -0.77 13.73 16 51 H 0.09 2.64 7.01 -2.39 -0.02 2.62 16 52 H 0.09 2.33 8.08 -2.39 -0.02 2.31 16 53 H 0.13 3.34 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -73.49 404.07 3.45 -70.05 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.31 Total: 18.01 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 6.53 Total: 4.77 kcal Atomic # 7 Polarization: -113.03 SS G_CDS: -5.36 Total: -118.38 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.07 Total: -21.67 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -73.49 3.45 -70.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036871013.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.943 kcal (2) G-P(sol) polarization free energy of solvation -73.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds