Wall clock time and date at job start Wed Apr 1 2020 04:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.53000 * 109.47259 * 2 1 4 4 H 1.08998 * 109.52193 * 54.91806 * 3 2 1 5 5 C 1.53196 * 109.49852 * 294.83642 * 3 2 1 6 6 N 1.46924 * 108.77908 * 185.40931 * 5 3 2 7 7 C 1.34777 * 120.63497 * 233.58897 * 6 5 3 8 8 O 1.21627 * 119.99650 * 355.70435 * 7 6 5 9 9 C 1.47263 * 120.00216 * 175.70086 * 7 6 5 10 10 C 1.46751 * 126.96524 * 49.12694 * 9 7 6 11 11 C 1.34490 * 106.36608 * 179.97438 * 10 9 7 12 12 N 1.36425 * 109.01101 * 359.97438 * 11 10 9 13 13 C 1.35216 * 109.89824 * 359.78901 * 12 11 10 14 14 C 1.50999 * 124.54346 * 179.65904 * 13 12 11 15 15 C 1.53399 * 108.30251 * 344.76806 * 14 13 12 16 16 C 1.53154 * 109.03789 * 48.28669 * 15 14 13 17 17 C 1.47017 * 126.01354 * 180.02562 * 12 11 10 18 18 C 1.46930 * 118.73379 * 53.60721 * 6 5 3 19 19 C 1.53182 * 108.76826 * 306.38561 * 18 6 5 20 20 C 1.53039 * 109.50123 * 174.99879 * 3 2 1 21 21 H 1.09005 * 109.45995 * 61.30990 * 20 3 2 22 22 N 1.46495 * 109.46017 * 301.33808 * 20 3 2 23 23 C 1.36939 * 120.00396 * 154.96897 * 22 20 3 24 24 H 1.08000 * 119.99554 * 0.02562 * 23 22 20 25 25 C 1.38801 * 120.00517 * 179.97438 * 23 22 20 26 26 N 1.31621 * 120.00409 * 180.02562 * 25 23 22 27 27 Si 1.86803 * 119.99835 * 0.02562 * 25 23 22 28 28 H 1.48500 * 109.47216 * 269.99444 * 27 25 23 29 29 H 1.48500 * 109.47005 * 30.00029 * 27 25 23 30 30 H 1.48509 * 109.46946 * 149.99692 * 27 25 23 31 31 H 1.09001 * 109.47669 * 299.99948 * 1 2 3 32 32 H 1.09008 * 109.47330 * 60.00363 * 1 2 3 33 33 H 1.09008 * 109.47210 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47669 * 240.00052 * 2 1 3 35 35 H 1.09001 * 109.47669 * 119.99875 * 2 1 3 36 36 H 1.08993 * 109.58649 * 305.20212 * 5 3 2 37 37 H 1.09008 * 109.58381 * 65.62546 * 5 3 2 38 38 H 1.08006 * 126.81558 * 359.94184 * 10 9 7 39 39 H 1.08002 * 125.49809 * 180.02562 * 11 10 9 40 40 H 1.09002 * 109.84716 * 224.97011 * 14 13 12 41 41 H 1.08994 * 109.55321 * 104.40156 * 14 13 12 42 42 H 1.09003 * 109.54093 * 288.41112 * 15 14 13 43 43 H 1.09008 * 109.53772 * 168.15510 * 15 14 13 44 44 H 1.09005 * 109.45456 * 170.40815 * 16 15 14 45 45 H 1.08998 * 109.46451 * 50.44612 * 16 15 14 46 46 H 1.09003 * 109.56435 * 282.22675 * 17 12 11 47 47 H 1.09002 * 109.56297 * 42.45093 * 17 12 11 48 48 H 1.09003 * 109.58030 * 66.18608 * 18 6 5 49 49 H 1.09003 * 109.58150 * 186.45888 * 18 6 5 50 50 H 1.09000 * 109.51177 * 294.69526 * 19 18 6 51 51 H 1.09004 * 109.48860 * 174.59950 * 19 18 6 52 52 H 0.97006 * 120.00253 * 334.97062 * 22 20 3 53 53 H 0.97000 * 120.00414 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6047 1.9827 0.8407 5 6 1.6385 2.1268 -1.3105 6 7 2.2450 3.4644 -1.3507 7 6 1.4857 4.5565 -1.5682 8 8 0.3002 4.4343 -1.8110 9 6 2.0914 5.8976 -1.5118 10 6 3.3179 6.3410 -2.1846 11 6 3.4869 7.6330 -1.8517 12 7 2.4664 8.0179 -1.0321 13 6 1.6231 6.9807 -0.8290 14 6 0.3844 7.0403 0.0325 15 6 0.4658 8.2981 0.9068 16 6 0.8347 9.4956 0.0262 17 6 2.2841 9.3547 -0.4480 18 6 3.6952 3.5888 -1.1498 19 6 4.0732 2.8883 0.1590 20 6 3.5651 1.4451 0.1258 21 1 4.0008 0.9263 -0.7282 22 7 3.9541 0.7621 1.3620 23 6 5.1920 0.1859 1.4657 24 1 5.8817 0.2352 0.6361 25 6 5.5607 -0.4608 2.6372 26 7 6.7507 -1.0142 2.7370 27 14 4.3679 -0.5456 4.0724 28 1 4.5686 0.6331 4.9531 29 1 2.9747 -0.5482 3.5585 30 1 4.6124 -1.7892 4.8464 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.9964 1.5377 -2.1548 37 1 0.5532 2.2161 -1.3586 38 1 3.9581 5.7473 -2.8204 39 1 4.2990 8.2644 -2.1808 40 1 0.3314 6.1550 0.6662 41 1 -0.4998 7.0909 -0.6029 42 1 1.2284 8.1604 1.6735 43 1 -0.5001 8.4767 1.3794 44 1 0.7287 10.4155 0.6013 45 1 0.1711 9.5292 -0.8378 46 1 2.9592 9.4782 0.3989 47 1 2.4992 10.1139 -1.1999 48 1 4.2208 3.1190 -1.9811 49 1 3.9672 4.6429 -1.0944 50 1 3.6187 3.4148 0.9982 51 1 5.1574 2.8898 0.2722 52 1 3.3347 0.7180 2.1073 53 1 7.0083 -1.4664 3.5556 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037857212.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:22 Heat of formation + Delta-G solvation = -3.968084 kcal Electronic energy + Delta-G solvation = -31710.851251 eV Core-core repulsion = 27774.976975 eV Total energy + Delta-G solvation = -3935.874276 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.55442 -40.96965 -39.01382 -36.87219 -36.18772 -35.32568 -33.59635 -33.54665 -31.47108 -30.70367 -30.01997 -28.71158 -26.65414 -25.31452 -25.01352 -24.40586 -23.00889 -22.22501 -21.91895 -21.26486 -20.49935 -19.52366 -19.04344 -18.25979 -17.37442 -16.86308 -16.53525 -16.41477 -16.07044 -15.92686 -15.23794 -15.20203 -15.14332 -14.96887 -14.72315 -14.68055 -14.58843 -14.48525 -14.29460 -14.01659 -13.92878 -13.60435 -13.23943 -13.07236 -12.96125 -12.90074 -12.64562 -12.55884 -12.44442 -12.12555 -12.02320 -11.97884 -11.85871 -11.84849 -11.75917 -11.62882 -11.55928 -11.13782 -10.98544 -10.80667 -9.66103 -9.41941 -9.21988 -9.06321 -7.99227 -5.30932 0.94931 1.37968 1.39206 1.46757 1.55152 1.81105 2.12305 2.36823 2.49659 3.32418 3.53468 3.58212 3.68187 3.73019 3.78802 3.84388 3.88396 4.03178 4.07192 4.28006 4.28721 4.31061 4.38543 4.40371 4.43189 4.46591 4.47881 4.62512 4.70297 4.70583 4.78601 4.79701 4.82454 4.84764 4.93610 4.97032 4.98070 5.00922 5.05800 5.12487 5.14368 5.21120 5.25598 5.27817 5.34554 5.45789 5.51152 5.67602 5.81170 5.84595 6.15069 6.24992 6.41711 6.51741 7.10700 7.24933 7.87409 8.06617 9.22459 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.012313 B = 0.003073 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.486653 B = 9110.403047 C = 9732.213681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.094 4.094 4 H 0.060 0.940 5 C 0.126 3.874 6 N -0.601 5.601 7 C 0.591 3.409 8 O -0.589 6.589 9 C -0.257 4.257 10 C -0.189 4.189 11 C -0.001 4.001 12 N -0.443 5.443 13 C 0.083 3.917 14 C -0.057 4.057 15 C -0.122 4.122 16 C -0.131 4.131 17 C 0.095 3.905 18 C 0.113 3.887 19 C -0.139 4.139 20 C 0.184 3.816 21 H 0.048 0.952 22 N -0.746 5.746 23 C -0.217 4.217 24 H 0.061 0.939 25 C -0.062 4.062 26 N -0.984 5.984 27 Si 0.946 3.054 28 H -0.283 1.283 29 H -0.254 1.254 30 H -0.298 1.298 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.154 0.846 39 H 0.201 0.799 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.115 0.885 45 H 0.069 0.931 46 H 0.096 0.904 47 H 0.114 0.886 48 H 0.077 0.923 49 H 0.108 0.892 50 H 0.048 0.952 51 H 0.063 0.937 52 H 0.362 0.638 53 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.640 24.308 -8.460 28.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.115 4.115 4 H 0.078 0.922 5 C 0.003 3.997 6 N -0.332 5.332 7 C 0.382 3.618 8 O -0.471 6.471 9 C -0.266 4.266 10 C -0.212 4.212 11 C -0.128 4.128 12 N -0.119 5.119 13 C -0.034 4.034 14 C -0.095 4.095 15 C -0.159 4.159 16 C -0.169 4.169 17 C -0.024 4.024 18 C -0.010 4.010 19 C -0.180 4.180 20 C 0.076 3.924 21 H 0.066 0.934 22 N -0.389 5.389 23 C -0.348 4.348 24 H 0.079 0.921 25 C -0.253 4.253 26 N -0.636 5.636 27 Si 0.774 3.226 28 H -0.209 1.209 29 H -0.179 1.179 30 H -0.225 1.225 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.172 0.828 39 H 0.218 0.782 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.109 0.891 44 H 0.133 0.867 45 H 0.088 0.912 46 H 0.114 0.886 47 H 0.132 0.868 48 H 0.096 0.904 49 H 0.126 0.874 50 H 0.067 0.933 51 H 0.081 0.919 52 H 0.195 0.805 53 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.046 24.526 -8.524 29.058 hybrid contribution 0.028 -0.901 1.122 1.439 sum -13.018 23.626 -7.402 27.972 Atomic orbital electron populations 1.21789 0.94638 1.02086 1.01881 1.21418 0.96307 0.94942 1.02270 1.21673 0.95348 0.96756 0.97678 0.92194 1.21628 0.99355 0.81885 0.96840 1.48050 1.08937 1.06229 1.69963 1.17848 0.84909 0.84231 0.74788 1.90691 1.17300 1.87480 1.51621 1.19971 1.01954 0.93065 1.11660 1.22138 0.97268 0.95900 1.05941 1.22155 0.95281 0.96617 0.98715 1.44163 1.19408 1.10487 1.37827 1.20275 0.94977 0.87008 1.01153 1.20401 0.92788 0.99917 0.96417 1.21677 1.03601 0.93065 0.97599 1.21890 0.94335 0.99963 1.00672 1.22415 0.99241 0.80576 1.00169 1.21995 0.78893 1.03119 0.96997 1.22411 1.01086 0.97336 0.97142 1.20375 0.92578 0.91150 0.88322 0.93388 1.42779 1.14889 1.66499 1.14688 1.19006 0.91233 1.25505 0.99049 0.92096 1.25361 0.98171 1.01111 1.00654 1.69865 1.21640 1.43811 1.28240 0.85545 0.80133 0.76754 0.80168 1.20946 1.17900 1.22497 0.93202 0.91936 0.91874 0.91603 0.92993 0.90505 0.89369 0.82812 0.78202 0.91554 0.90222 0.91449 0.89077 0.86685 0.91204 0.88596 0.86833 0.90449 0.87429 0.93334 0.91875 0.80509 0.93537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 9.67 71.98 0.70 -3.04 16 2 C -0.11 -3.43 5.31 30.59 0.16 -3.27 16 3 C -0.09 -3.03 1.92 -10.71 -0.02 -3.05 16 4 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 5 C 0.13 3.70 5.32 86.36 0.46 4.16 16 6 N -0.60 -18.02 2.97 -822.96 -2.45 -20.46 16 7 C 0.59 19.16 7.39 86.62 0.64 19.80 16 8 O -0.59 -22.34 16.46 -4.12 -0.07 -22.41 16 9 C -0.26 -7.07 5.24 -19.12 -0.10 -7.17 16 10 C -0.19 -4.09 8.73 23.64 0.21 -3.89 16 11 C 0.00 -0.01 11.40 83.12 0.95 0.94 16 12 N -0.44 -7.59 3.11 -508.00 -1.58 -9.17 16 13 C 0.08 1.95 6.57 41.69 0.27 2.22 16 14 C -0.06 -1.20 5.97 30.08 0.18 -1.02 16 15 C -0.12 -1.54 5.98 30.78 0.18 -1.36 16 16 C -0.13 -1.06 5.92 30.70 0.18 -0.88 16 17 C 0.10 0.82 6.90 86.33 0.60 1.42 16 18 C 0.11 3.12 5.97 86.36 0.52 3.64 16 19 C -0.14 -4.74 5.66 30.67 0.17 -4.56 16 20 C 0.18 6.88 2.19 45.02 0.10 6.98 16 21 H 0.05 1.89 8.08 -2.38 -0.02 1.87 16 22 N -0.75 -34.33 4.13 -322.83 -1.33 -35.66 16 23 C -0.22 -12.11 10.41 84.03 0.87 -11.24 16 24 H 0.06 3.71 8.06 -2.91 -0.02 3.68 16 25 C -0.06 -3.62 5.50 84.86 0.47 -3.16 16 26 N -0.98 -62.95 13.97 21.65 0.30 -62.65 16 27 Si 0.95 45.95 27.73 68.60 1.90 47.85 16 28 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 29 H -0.25 -11.27 6.52 99.48 0.65 -10.62 16 30 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 31 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.06 1.48 6.70 -2.38 -0.02 1.46 16 33 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.05 1.87 7.22 -2.39 -0.02 1.85 16 36 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.09 2.69 5.75 -2.38 -0.01 2.67 16 38 H 0.15 2.93 7.72 -2.91 -0.02 2.91 16 39 H 0.20 1.74 8.06 -2.91 -0.02 1.71 16 40 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.07 0.89 8.12 -2.39 -0.02 0.88 16 43 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 44 H 0.11 0.32 8.14 -2.38 -0.02 0.30 16 45 H 0.07 0.67 8.11 -2.39 -0.02 0.66 16 46 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 48 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 49 H 0.11 2.74 4.50 -2.39 -0.01 2.73 16 50 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 51 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 52 H 0.36 16.44 5.37 -92.70 -0.50 15.95 16 53 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -75.56 405.15 3.65 -71.91 By element: Atomic # 1 Polarization: 33.70 SS G_CDS: 0.34 Total: 34.04 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: 6.53 Total: -3.45 kcal Atomic # 7 Polarization: -122.88 SS G_CDS: -5.06 Total: -127.94 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.07 Total: -22.41 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.90 Total: 47.85 kcal Total: -75.56 3.65 -71.91 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037857212.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.939 kcal (2) G-P(sol) polarization free energy of solvation -75.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds