Wall clock time and date at job start Wed Apr 1 2020 04:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52990 * 109.47176 * 2 1 4 4 H 1.08995 * 109.50024 * 305.06106 * 3 2 1 5 5 C 1.53625 * 109.43396 * 65.29033 * 3 2 1 6 6 N 1.46923 * 108.54402 * 174.72568 * 5 3 2 7 7 C 1.34778 * 120.63192 * 126.36830 * 6 5 3 8 8 O 1.21624 * 120.00060 * 4.01989 * 7 6 5 9 9 C 1.47263 * 120.00082 * 184.01940 * 7 6 5 10 10 C 1.46752 * 126.96866 * 310.86354 * 9 7 6 11 11 C 1.34499 * 106.36287 * 180.10717 * 10 9 7 12 12 N 1.36422 * 109.01349 * 359.62489 * 11 10 9 13 13 C 1.35207 * 109.89891 * 0.26881 * 12 11 10 14 14 C 1.50998 * 124.54747 * 179.97438 * 13 12 11 15 15 C 1.53395 * 108.25244 * 344.32090 * 14 13 12 16 16 C 1.53161 * 109.04247 * 48.46905 * 15 14 13 17 17 C 1.47019 * 126.01110 * 180.28864 * 12 11 10 18 18 C 1.46932 * 118.73978 * 306.08812 * 6 5 3 19 19 C 1.53193 * 108.77076 * 53.86182 * 18 6 5 20 20 C 1.53039 * 109.31662 * 305.36509 * 19 18 6 21 21 H 1.09002 * 109.46514 * 181.37006 * 20 19 18 22 22 N 1.46499 * 109.46051 * 301.34897 * 20 19 18 23 23 C 1.36936 * 119.99597 * 274.99610 * 22 20 19 24 24 H 1.07997 * 120.00184 * 0.02562 * 23 22 20 25 25 C 1.38818 * 119.99756 * 179.97438 * 23 22 20 26 26 N 1.31616 * 119.99828 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 119.99885 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47266 * 90.00103 * 27 25 23 29 29 H 1.48505 * 109.47171 * 210.00127 * 27 25 23 30 30 H 1.48505 * 109.47197 * 330.00166 * 27 25 23 31 31 H 1.09003 * 109.47178 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47368 * 300.00106 * 1 2 3 33 33 H 1.08995 * 109.47267 * 60.00087 * 1 2 3 34 34 H 1.08995 * 109.47135 * 239.99330 * 2 1 3 35 35 H 1.09004 * 109.46700 * 119.99865 * 2 1 3 36 36 H 1.08998 * 109.74246 * 54.98258 * 5 3 2 37 37 H 1.09003 * 109.66404 * 294.41469 * 5 3 2 38 38 H 1.07992 * 126.81946 * 0.02562 * 10 9 7 39 39 H 1.07999 * 125.49596 * 179.89204 * 11 10 9 40 40 H 1.09001 * 109.70715 * 224.62893 * 14 13 12 41 41 H 1.09003 * 109.74435 * 104.03140 * 14 13 12 42 42 H 1.08997 * 109.54030 * 288.60349 * 15 14 13 43 43 H 1.08996 * 109.61483 * 168.38140 * 15 14 13 44 44 H 1.09003 * 109.46236 * 170.40771 * 16 15 14 45 45 H 1.09002 * 109.44846 * 50.44071 * 16 15 14 46 46 H 1.09004 * 109.56445 * 282.22206 * 17 12 11 47 47 H 1.08997 * 109.56782 * 42.45259 * 17 12 11 48 48 H 1.08999 * 109.58740 * 173.64574 * 18 6 5 49 49 H 1.08995 * 109.58952 * 294.08116 * 18 6 5 50 50 H 1.09008 * 109.49736 * 65.31732 * 19 18 6 51 51 H 1.08996 * 109.49712 * 185.37961 * 19 18 6 52 52 H 0.96998 * 120.00112 * 94.99651 * 22 20 19 53 53 H 0.97004 * 119.99407 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6048 1.9822 -0.8410 5 6 1.6394 2.1262 1.3161 6 7 2.2451 3.4643 1.3507 7 6 1.4859 4.5564 1.5681 8 8 0.3003 4.4344 1.8106 9 6 2.0917 5.8975 1.5122 10 6 3.3180 6.3407 2.1855 11 6 3.4861 7.6333 1.8542 12 7 2.4703 8.0162 1.0280 13 6 1.6301 6.9775 0.8199 14 6 0.3926 7.0368 -0.0433 15 6 0.0528 8.5113 -0.2952 16 6 1.3201 9.2471 -0.7406 17 6 2.2923 9.3510 0.4381 18 6 3.6953 3.5887 1.1499 19 6 4.0737 2.8880 -0.1588 20 6 3.5653 1.4449 -0.1257 21 1 3.8544 0.9368 -1.0457 22 7 4.1507 0.7474 1.0219 23 6 5.3879 0.1704 0.9140 24 1 5.9322 0.2300 -0.0168 25 6 5.9428 -0.4901 2.0016 26 7 5.2796 -0.5621 3.1362 27 14 7.6308 -1.2765 1.8548 28 1 8.6719 -0.2896 2.2389 29 1 7.7084 -2.4540 2.7563 30 1 7.8542 -1.7111 0.4524 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.0008 1.5395 2.1607 37 1 0.5542 2.2149 1.3678 38 1 3.9576 5.7472 2.8218 39 1 4.2971 8.2651 2.1851 40 1 -0.4372 6.5509 0.4700 41 1 0.5814 6.5357 -0.9927 42 1 -0.3257 8.9602 0.6230 43 1 -0.7044 8.5841 -1.0758 44 1 1.0574 10.2477 -1.0840 45 1 1.7926 8.6964 -1.5541 46 1 1.8865 10.0302 1.1878 47 1 3.2538 9.7264 0.0877 48 1 3.9671 4.6427 1.0918 49 1 4.2210 3.1188 1.9811 50 1 3.6193 3.4147 -0.9981 51 1 5.1578 2.8898 -0.2722 52 1 3.6619 0.6943 1.8580 53 1 5.6673 -1.0240 3.8960 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037857213.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:27 Heat of formation + Delta-G solvation = -3.490793 kcal Electronic energy + Delta-G solvation = -31996.886192 eV Core-core repulsion = 28061.032613 eV Total energy + Delta-G solvation = -3935.853579 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.55568 -40.99164 -38.99214 -36.84779 -35.76500 -35.30935 -33.52535 -33.36463 -31.00043 -30.57735 -29.93279 -28.68626 -26.46232 -25.45588 -25.14008 -24.94493 -23.22842 -22.20568 -21.90196 -20.79661 -19.89339 -19.26582 -18.96876 -18.21079 -17.32745 -16.72162 -16.61755 -16.36013 -15.99307 -15.72442 -15.56324 -15.13632 -15.11421 -14.92022 -14.76211 -14.68045 -14.55758 -14.36239 -14.15719 -14.04860 -13.65854 -13.54303 -13.04274 -12.93912 -12.88068 -12.83569 -12.63072 -12.47490 -12.33080 -12.11807 -12.03216 -11.96795 -11.82537 -11.80665 -11.71988 -11.55045 -11.43725 -11.11475 -10.91323 -10.74838 -9.58154 -9.37009 -9.06647 -8.89399 -7.86353 -5.12764 0.95389 1.50164 1.50587 1.53120 1.58751 1.84380 2.13930 2.36958 2.61281 3.46984 3.60666 3.71274 3.75100 3.82745 3.87949 3.89021 3.97457 4.10487 4.12257 4.27911 4.36271 4.40006 4.41350 4.43286 4.46712 4.48252 4.48855 4.62688 4.71080 4.71995 4.84744 4.85951 4.87302 4.94928 4.99588 5.01246 5.03993 5.08393 5.13633 5.17235 5.21503 5.24261 5.29154 5.30233 5.33462 5.42625 5.53867 5.62205 5.72003 5.82499 6.15002 6.34973 6.43065 6.57251 7.26768 7.42185 8.18636 8.42851 9.37116 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.013362 B = 0.003194 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.970977 B = 8763.956490 C =10040.414969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 C -0.089 4.089 4 H 0.084 0.916 5 C 0.126 3.874 6 N -0.595 5.595 7 C 0.588 3.412 8 O -0.593 6.593 9 C -0.256 4.256 10 C -0.195 4.195 11 C 0.004 3.996 12 N -0.441 5.441 13 C 0.089 3.911 14 C -0.062 4.062 15 C -0.119 4.119 16 C -0.131 4.131 17 C 0.095 3.905 18 C 0.122 3.878 19 C -0.139 4.139 20 C 0.173 3.827 21 H 0.048 0.952 22 N -0.724 5.724 23 C -0.226 4.226 24 H 0.076 0.924 25 C -0.075 4.075 26 N -0.970 5.970 27 Si 0.965 3.035 28 H -0.290 1.290 29 H -0.302 1.302 30 H -0.271 1.271 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.043 0.957 36 H 0.044 0.956 37 H 0.083 0.917 38 H 0.139 0.861 39 H 0.201 0.799 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.093 0.907 44 H 0.116 0.884 45 H 0.070 0.930 46 H 0.097 0.903 47 H 0.113 0.887 48 H 0.103 0.897 49 H 0.045 0.955 50 H 0.069 0.931 51 H 0.065 0.935 52 H 0.373 0.627 53 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.976 23.147 -10.537 26.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.109 4.109 4 H 0.102 0.898 5 C 0.003 3.997 6 N -0.326 5.326 7 C 0.379 3.621 8 O -0.476 6.476 9 C -0.266 4.266 10 C -0.219 4.219 11 C -0.124 4.124 12 N -0.117 5.117 13 C -0.027 4.027 14 C -0.099 4.099 15 C -0.157 4.157 16 C -0.169 4.169 17 C -0.024 4.024 18 C 0.000 4.000 19 C -0.180 4.180 20 C 0.065 3.935 21 H 0.066 0.934 22 N -0.365 5.365 23 C -0.358 4.358 24 H 0.093 0.907 25 C -0.267 4.267 26 N -0.621 5.621 27 Si 0.795 3.205 28 H -0.218 1.218 29 H -0.230 1.230 30 H -0.196 1.196 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.102 0.898 38 H 0.157 0.843 39 H 0.218 0.782 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.112 0.888 44 H 0.135 0.865 45 H 0.089 0.911 46 H 0.115 0.885 47 H 0.131 0.869 48 H 0.121 0.879 49 H 0.064 0.936 50 H 0.087 0.913 51 H 0.083 0.917 52 H 0.206 0.794 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.418 23.373 -10.641 27.026 hybrid contribution 1.088 -1.313 1.088 2.023 sum -7.330 22.060 -9.553 25.132 Atomic orbital electron populations 1.21781 0.94702 1.01956 1.01831 1.21337 0.96121 0.95059 1.01777 1.21717 0.95830 0.96468 0.96907 0.89821 1.21585 0.98454 0.82028 0.97596 1.48016 1.08955 1.06015 1.69569 1.17920 0.84978 0.84328 0.74866 1.90667 1.17404 1.87543 1.51983 1.19931 1.01918 0.93213 1.11553 1.22067 0.97543 0.96131 1.06147 1.22065 0.95454 0.96081 0.98760 1.44155 1.19557 1.10625 1.37354 1.20278 0.94944 0.86654 1.00873 1.20489 0.92219 0.99530 0.97712 1.21651 0.98674 0.92528 1.02809 1.21904 0.94705 1.03574 0.96670 1.22443 1.02970 0.80114 0.96863 1.21739 0.78548 1.01942 0.97805 1.22374 1.01118 0.97787 0.96672 1.20440 0.91077 0.91287 0.90733 0.93369 1.42588 1.18379 1.64170 1.11361 1.19581 0.94312 1.25084 0.96791 0.90656 1.25408 1.01902 1.03302 0.96046 1.69823 1.39601 1.49848 1.02867 0.85256 0.80705 0.77368 0.77129 1.21764 1.22959 1.19575 0.92021 0.93416 0.91720 0.91743 0.93791 0.93773 0.89836 0.84340 0.78180 0.90926 0.89960 0.91457 0.88801 0.86527 0.91102 0.88504 0.86887 0.87861 0.93648 0.91262 0.91665 0.79408 0.94434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.04 9.68 71.98 0.70 -3.35 16 2 C -0.10 -3.53 5.19 30.59 0.16 -3.37 16 3 C -0.09 -3.09 2.15 -10.57 -0.02 -3.11 16 4 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 5 C 0.13 4.80 5.04 86.51 0.44 5.23 16 6 N -0.60 -22.16 2.97 -822.11 -2.44 -24.60 16 7 C 0.59 22.31 7.39 86.62 0.64 22.95 16 8 O -0.59 -25.56 16.03 -4.11 -0.07 -25.62 16 9 C -0.26 -8.13 5.24 -19.12 -0.10 -8.23 16 10 C -0.19 -5.33 8.73 23.64 0.21 -5.13 16 11 C 0.00 0.07 11.40 83.12 0.95 1.02 16 12 N -0.44 -8.30 3.11 -508.01 -1.58 -9.88 16 13 C 0.09 2.27 6.57 41.69 0.27 2.55 16 14 C -0.06 -1.31 5.99 30.07 0.18 -1.13 16 15 C -0.12 -1.47 5.98 30.78 0.18 -1.28 16 16 C -0.13 -1.04 5.92 30.70 0.18 -0.85 16 17 C 0.10 0.87 6.90 86.33 0.60 1.47 16 18 C 0.12 4.39 5.71 86.36 0.49 4.88 16 19 C -0.14 -4.84 5.78 30.67 0.18 -4.66 16 20 C 0.17 6.73 2.53 45.02 0.11 6.85 16 21 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 22 N -0.72 -35.16 3.72 -322.80 -1.20 -36.36 16 23 C -0.23 -12.12 9.93 84.04 0.83 -11.28 16 24 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 25 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 26 N -0.97 -59.33 13.06 21.65 0.28 -59.05 16 27 Si 0.96 46.09 29.55 68.60 2.03 48.12 16 28 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 29 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 30 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 31 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.05 1.38 6.70 -2.38 -0.02 1.37 16 33 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.04 1.77 7.70 -2.38 -0.02 1.75 16 36 H 0.04 1.92 6.63 -2.39 -0.02 1.91 16 37 H 0.08 3.18 5.76 -2.39 -0.01 3.17 16 38 H 0.14 3.89 7.72 -2.91 -0.02 3.87 16 39 H 0.20 2.38 8.06 -2.91 -0.02 2.36 16 40 H 0.07 1.89 7.69 -2.39 -0.02 1.88 16 41 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.07 0.86 8.12 -2.39 -0.02 0.84 16 43 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 45 H 0.07 0.67 8.11 -2.39 -0.02 0.65 16 46 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 47 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 48 H 0.10 3.33 4.51 -2.39 -0.01 3.32 16 49 H 0.05 1.94 7.74 -2.39 -0.02 1.92 16 50 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 51 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 52 H 0.37 19.93 5.93 -92.71 -0.55 19.38 16 53 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -72.70 403.83 3.84 -68.86 By element: Atomic # 1 Polarization: 39.39 SS G_CDS: 0.35 Total: 39.74 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 6.46 Total: -1.21 kcal Atomic # 7 Polarization: -124.95 SS G_CDS: -4.94 Total: -129.89 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.07 Total: -25.62 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -72.70 3.84 -68.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037857213.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.372 kcal (2) G-P(sol) polarization free energy of solvation -72.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds