Wall clock time and date at job start Wed Apr 1 2020 04:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47203 * 2 1 4 4 H 1.09004 * 109.49810 * 55.06317 * 3 2 1 5 5 C 1.53198 * 109.49764 * 295.00160 * 3 2 1 6 6 N 1.46923 * 108.77388 * 185.41409 * 5 3 2 7 7 C 1.34776 * 120.62862 * 233.62868 * 6 5 3 8 8 O 1.21629 * 120.00142 * 355.67963 * 7 6 5 9 9 C 1.47263 * 119.99985 * 175.68289 * 7 6 5 10 10 C 1.46752 * 126.97113 * 48.78621 * 9 7 6 11 11 C 1.34495 * 106.36199 * 179.88256 * 10 9 7 12 12 N 1.36421 * 109.01664 * 0.37261 * 11 10 9 13 13 C 1.35210 * 109.89812 * 359.76630 * 12 11 10 14 14 C 1.50995 * 124.54989 * 179.97438 * 13 12 11 15 15 C 1.53423 * 108.23940 * 344.26448 * 14 13 12 16 16 C 1.53153 * 109.02641 * 48.50604 * 15 14 13 17 17 C 1.47012 * 126.01221 * 179.76292 * 12 11 10 18 18 C 1.46922 * 118.74064 * 53.60705 * 6 5 3 19 19 C 1.53190 * 108.77935 * 306.38865 * 18 6 5 20 20 C 1.53044 * 109.49805 * 175.16428 * 3 2 1 21 21 H 1.08996 * 109.45842 * 301.33512 * 20 3 2 22 22 N 1.46498 * 109.46349 * 61.29574 * 20 3 2 23 23 C 1.36927 * 120.00078 * 205.00260 * 22 20 3 24 24 H 1.08002 * 120.00552 * 359.97438 * 23 22 20 25 25 C 1.38816 * 120.00224 * 179.97438 * 23 22 20 26 26 N 1.31624 * 119.99667 * 0.02562 * 25 23 22 27 27 Si 1.86792 * 120.00347 * 179.97438 * 25 23 22 28 28 H 1.48507 * 109.47066 * 90.00046 * 27 25 23 29 29 H 1.48500 * 109.47596 * 210.00135 * 27 25 23 30 30 H 1.48500 * 109.47440 * 330.00546 * 27 25 23 31 31 H 1.09000 * 109.47328 * 299.99975 * 1 2 3 32 32 H 1.09001 * 109.47146 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47159 * 59.99896 * 1 2 3 34 34 H 1.09000 * 109.47159 * 120.00103 * 2 1 3 35 35 H 1.09000 * 109.47328 * 240.00025 * 2 1 3 36 36 H 1.08996 * 109.58242 * 305.19826 * 5 3 2 37 37 H 1.08997 * 109.58721 * 65.48189 * 5 3 2 38 38 H 1.08000 * 126.81494 * 0.02562 * 10 9 7 39 39 H 1.08006 * 125.49006 * 180.09752 * 11 10 9 40 40 H 1.09001 * 109.70995 * 104.00949 * 14 13 12 41 41 H 1.08995 * 109.71110 * 224.64138 * 14 13 12 42 42 H 1.09000 * 109.56475 * 288.63291 * 15 14 13 43 43 H 1.09001 * 109.53399 * 168.36037 * 15 14 13 44 44 H 1.09006 * 109.46207 * 170.39195 * 16 15 14 45 45 H 1.08999 * 109.46076 * 50.42288 * 16 15 14 46 46 H 1.09004 * 109.56468 * 282.23684 * 17 12 11 47 47 H 1.09003 * 109.56423 * 42.45679 * 17 12 11 48 48 H 1.09000 * 109.58671 * 66.18135 * 18 6 5 49 49 H 1.09003 * 109.58774 * 186.59881 * 18 6 5 50 50 H 1.08994 * 109.50342 * 174.58362 * 19 18 6 51 51 H 1.08995 * 109.49941 * 294.65495 * 19 18 6 52 52 H 0.97000 * 119.99557 * 25.00009 * 22 20 3 53 53 H 0.96996 * 119.99929 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9817 0.8423 5 6 1.6350 2.1280 -1.3088 6 7 2.2415 3.4656 -1.3493 7 6 1.4815 4.5580 -1.5628 8 8 0.2952 4.4362 -1.8022 9 6 2.0873 5.8990 -1.5064 10 6 3.3155 6.3416 -2.1767 11 6 3.4827 7.6345 -1.8462 12 7 2.4646 8.0182 -1.0232 13 6 1.6242 6.9795 -0.8159 14 6 0.3849 7.0394 0.0447 15 6 0.4697 8.2952 0.9220 16 6 0.8368 9.4944 0.0430 17 6 2.2844 9.3539 -0.4361 18 6 3.6921 3.5898 -1.1522 19 6 4.0741 2.8880 0.1548 20 6 3.5656 1.4449 0.1216 21 1 3.8574 0.9359 1.0402 22 7 4.1480 0.7485 -1.0281 23 6 5.3860 0.1727 -0.9246 24 1 5.9334 0.2322 0.0046 25 6 5.9377 -0.4877 -2.0139 26 7 5.2710 -0.5599 -3.1464 27 14 7.6269 -1.2726 -1.8729 28 1 7.4834 -2.6763 -1.4100 29 1 8.2935 -1.2546 -3.1997 30 1 8.4467 -0.5110 -0.8966 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.9907 1.5397 -2.1546 37 1 0.5495 2.2151 -1.3550 38 1 3.9564 5.7476 -2.8114 39 1 4.2948 8.2659 -2.1754 40 1 -0.5005 7.0916 -0.5889 41 1 0.3334 6.1531 0.6771 42 1 1.2342 8.1557 1.6862 43 1 -0.4948 8.4734 1.3975 44 1 0.7328 10.4132 0.6203 45 1 0.1709 9.5301 -0.8192 46 1 2.9619 9.4754 0.4092 47 1 2.4978 10.1146 -1.1870 48 1 4.2156 3.1208 -1.9854 49 1 3.9641 4.6438 -1.0941 50 1 5.1585 2.8891 0.2650 51 1 3.6224 3.4142 0.9957 52 1 3.6566 0.6953 -1.8627 53 1 5.6566 -1.0210 -3.9077 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037857215.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:36 Heat of formation + Delta-G solvation = -3.191485 kcal Electronic energy + Delta-G solvation = -31998.490054 eV Core-core repulsion = 28062.649454 eV Total energy + Delta-G solvation = -3935.840600 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.55710 -41.00181 -38.99725 -36.84792 -35.76678 -35.32113 -33.53264 -33.36430 -31.00165 -30.58231 -29.93848 -28.68729 -26.47218 -25.45761 -25.13894 -24.94866 -23.22827 -22.20706 -21.90172 -20.78035 -19.90780 -19.26347 -18.97860 -18.22786 -17.33384 -16.63728 -16.59347 -16.45094 -16.01376 -15.73833 -15.52447 -15.14825 -15.11036 -14.91528 -14.76873 -14.69240 -14.52070 -14.34307 -14.22309 -14.07046 -13.65181 -13.53863 -13.04264 -12.94390 -12.89195 -12.82600 -12.62817 -12.47337 -12.33255 -12.09869 -12.05319 -11.93319 -11.82828 -11.81524 -11.73216 -11.55499 -11.43631 -11.11353 -10.92367 -10.75475 -9.58568 -9.36910 -9.06705 -8.89426 -7.86298 -5.12761 0.94987 1.50110 1.50655 1.53225 1.58769 1.84341 2.13787 2.37294 2.61298 3.46982 3.60373 3.71358 3.75298 3.81747 3.87693 3.87837 3.97669 4.10297 4.12075 4.28012 4.36160 4.40044 4.41358 4.42988 4.46495 4.49071 4.50387 4.62519 4.70527 4.71886 4.81912 4.86755 4.87564 4.94715 4.99443 5.00555 5.03344 5.08283 5.13728 5.17059 5.20547 5.24173 5.29144 5.30396 5.33370 5.42598 5.53722 5.62115 5.71886 5.82469 6.14808 6.34982 6.43039 6.57284 7.26728 7.42164 8.18553 8.42811 9.37169 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.013449 B = 0.003188 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.506755 B = 8779.581526 C =10057.714240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.090 4.090 4 H 0.083 0.917 5 C 0.126 3.874 6 N -0.595 5.595 7 C 0.587 3.413 8 O -0.593 6.593 9 C -0.256 4.256 10 C -0.195 4.195 11 C 0.004 3.996 12 N -0.441 5.441 13 C 0.089 3.911 14 C -0.057 4.057 15 C -0.119 4.119 16 C -0.132 4.132 17 C 0.096 3.904 18 C 0.122 3.878 19 C -0.139 4.139 20 C 0.174 3.826 21 H 0.048 0.952 22 N -0.724 5.724 23 C -0.225 4.225 24 H 0.076 0.924 25 C -0.075 4.075 26 N -0.970 5.970 27 Si 0.965 3.035 28 H -0.293 1.293 29 H -0.302 1.302 30 H -0.269 1.269 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.064 0.936 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.083 0.917 38 H 0.139 0.861 39 H 0.202 0.798 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.093 0.907 44 H 0.117 0.883 45 H 0.066 0.934 46 H 0.100 0.900 47 H 0.111 0.889 48 H 0.045 0.955 49 H 0.104 0.896 50 H 0.065 0.935 51 H 0.069 0.931 52 H 0.373 0.627 53 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.982 23.278 10.436 26.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.110 4.110 4 H 0.101 0.899 5 C 0.004 3.996 6 N -0.326 5.326 7 C 0.379 3.621 8 O -0.476 6.476 9 C -0.266 4.266 10 C -0.219 4.219 11 C -0.123 4.123 12 N -0.117 5.117 13 C -0.028 4.028 14 C -0.095 4.095 15 C -0.157 4.157 16 C -0.170 4.170 17 C -0.024 4.024 18 C -0.001 4.001 19 C -0.180 4.180 20 C 0.065 3.935 21 H 0.066 0.934 22 N -0.365 5.365 23 C -0.357 4.357 24 H 0.093 0.907 25 C -0.267 4.267 26 N -0.622 5.622 27 Si 0.796 3.204 28 H -0.220 1.220 29 H -0.229 1.229 30 H -0.194 1.194 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.102 0.898 38 H 0.157 0.843 39 H 0.218 0.782 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.111 0.889 44 H 0.136 0.864 45 H 0.085 0.915 46 H 0.118 0.882 47 H 0.130 0.870 48 H 0.064 0.936 49 H 0.122 0.878 50 H 0.083 0.917 51 H 0.087 0.913 52 H 0.206 0.794 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.417 23.521 10.532 27.111 hybrid contribution 1.063 -1.356 -1.070 2.029 sum -7.354 22.165 9.462 25.197 Atomic orbital electron populations 1.21782 0.94702 1.01964 1.01832 1.21338 0.96122 0.95035 1.01786 1.21643 0.95848 0.96475 0.96995 0.89858 1.21486 0.98453 0.82068 0.97639 1.48000 1.08878 1.06006 1.69668 1.17923 0.84983 0.84327 0.74915 1.90673 1.17354 1.87583 1.51942 1.19941 1.01841 0.93203 1.11620 1.22070 0.97496 0.96159 1.06170 1.22068 0.95421 0.96128 0.98714 1.44152 1.19520 1.10544 1.37468 1.20278 0.95023 0.86637 1.00851 1.20433 0.92314 1.00303 0.96409 1.21675 1.03807 0.92694 0.97498 1.21902 0.94188 1.00193 1.00684 1.22440 0.99464 0.80322 1.00135 1.21746 0.78523 1.01965 0.97825 1.22373 1.01113 0.97785 0.96691 1.20435 0.91074 0.91302 0.90704 0.93366 1.42585 1.18291 1.64226 1.11389 1.19577 0.94267 1.25077 0.96805 0.90655 1.25411 1.01928 1.03299 0.96047 1.69822 1.39633 1.49828 1.02868 0.85254 0.80694 0.78334 0.76166 1.22024 1.22875 1.19404 0.91722 0.92012 0.93410 0.91724 0.93791 0.93821 0.89846 0.84313 0.78158 0.90436 0.91086 0.90951 0.88892 0.86449 0.91507 0.88183 0.87049 0.93617 0.87832 0.91671 0.91279 0.79412 0.94435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.05 9.67 71.98 0.70 -3.36 16 2 C -0.10 -3.53 5.19 30.59 0.16 -3.37 16 3 C -0.09 -3.10 2.14 -10.71 -0.02 -3.13 16 4 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 5 C 0.13 4.80 5.01 86.37 0.43 5.24 16 6 N -0.60 -22.18 2.97 -822.97 -2.45 -24.62 16 7 C 0.59 22.30 7.39 86.62 0.64 22.94 16 8 O -0.59 -25.57 16.46 -4.12 -0.07 -25.64 16 9 C -0.26 -8.13 5.25 -19.12 -0.10 -8.23 16 10 C -0.19 -5.32 8.72 23.64 0.21 -5.12 16 11 C 0.00 0.08 11.40 83.12 0.95 1.02 16 12 N -0.44 -8.27 3.11 -508.04 -1.58 -9.85 16 13 C 0.09 2.26 6.57 41.69 0.27 2.53 16 14 C -0.06 -1.20 5.97 30.08 0.18 -1.02 16 15 C -0.12 -1.42 5.98 30.79 0.18 -1.24 16 16 C -0.13 -1.07 5.92 30.69 0.18 -0.89 16 17 C 0.10 0.87 6.90 86.32 0.60 1.47 16 18 C 0.12 4.38 5.70 86.36 0.49 4.87 16 19 C -0.14 -4.85 5.78 30.67 0.18 -4.67 16 20 C 0.17 6.75 2.53 45.02 0.11 6.86 16 21 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 22 N -0.72 -35.17 3.72 -322.81 -1.20 -36.37 16 23 C -0.23 -12.09 9.93 84.04 0.83 -11.26 16 24 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 25 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 26 N -0.97 -59.36 13.06 21.65 0.28 -59.07 16 27 Si 0.96 46.11 29.55 68.60 2.03 48.13 16 28 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 29 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 30 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 31 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.05 1.39 6.69 -2.39 -0.02 1.37 16 34 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.04 1.77 7.69 -2.39 -0.02 1.75 16 36 H 0.04 1.90 6.64 -2.39 -0.02 1.89 16 37 H 0.08 3.18 5.75 -2.39 -0.01 3.16 16 38 H 0.14 3.89 7.70 -2.91 -0.02 3.86 16 39 H 0.20 2.37 8.06 -2.91 -0.02 2.34 16 40 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.07 0.84 8.12 -2.39 -0.02 0.82 16 43 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.12 0.28 8.14 -2.38 -0.02 0.26 16 45 H 0.07 0.69 8.11 -2.39 -0.02 0.67 16 46 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 47 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.05 1.95 7.74 -2.39 -0.02 1.93 16 49 H 0.10 3.34 4.48 -2.39 -0.01 3.33 16 50 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 51 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 52 H 0.37 19.94 5.94 -92.71 -0.55 19.39 16 53 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -72.78 404.59 3.82 -68.96 By element: Atomic # 1 Polarization: 39.25 SS G_CDS: 0.35 Total: 39.60 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: 6.46 Total: -1.12 kcal Atomic # 7 Polarization: -124.98 SS G_CDS: -4.94 Total: -129.93 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.07 Total: -25.64 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -72.78 3.82 -68.96 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037857215.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.769 kcal (2) G-P(sol) polarization free energy of solvation -72.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds