Wall clock time and date at job start Wed Apr 1 2020 04:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47408 * 2 1 4 4 H 1.09002 * 109.49705 * 304.99640 * 3 2 1 5 5 C 1.53190 * 109.50145 * 65.06120 * 3 2 1 6 6 N 1.46920 * 108.77582 * 174.58574 * 5 3 2 7 7 C 1.34776 * 120.62942 * 126.41694 * 6 5 3 8 8 O 1.21286 * 120.00242 * 354.20960 * 7 6 5 9 9 C 1.50700 * 120.00024 * 174.20781 * 7 6 5 10 10 C 1.53007 * 109.47271 * 184.31596 * 9 7 6 11 11 C 1.53005 * 109.47382 * 304.31465 * 9 7 6 12 12 C 1.50695 * 109.47274 * 64.31649 * 9 7 6 13 13 C 1.38674 * 120.41972 * 187.93625 * 12 9 7 14 14 C 1.38626 * 118.41737 * 179.78317 * 13 12 9 15 15 C 1.38226 * 119.16518 * 0.47466 * 14 13 12 16 16 N 1.31861 * 120.75994 * 359.76830 * 15 14 13 17 17 C 1.31875 * 121.72537 * 0.02562 * 16 15 14 18 18 C 1.46921 * 118.74226 * 306.39063 * 6 5 3 19 19 C 1.53198 * 108.77279 * 53.61446 * 18 6 5 20 20 C 1.53041 * 109.49790 * 184.93707 * 3 2 1 21 21 H 1.09002 * 109.46469 * 58.66310 * 20 3 2 22 22 N 1.46500 * 109.45898 * 298.70140 * 20 3 2 23 23 C 1.36932 * 119.99915 * 155.00236 * 22 20 3 24 24 H 1.07995 * 120.00673 * 359.97438 * 23 22 20 25 25 C 1.38818 * 119.99883 * 180.02562 * 23 22 20 26 26 N 1.31620 * 119.99784 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 120.00022 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47451 * 359.97438 * 27 25 23 29 29 H 1.48505 * 109.47425 * 119.99955 * 27 25 23 30 30 H 1.48507 * 109.46994 * 239.99774 * 27 25 23 31 31 H 1.08998 * 109.46907 * 300.00440 * 1 2 3 32 32 H 1.09003 * 109.46863 * 59.99657 * 1 2 3 33 33 H 1.08992 * 109.47211 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.46863 * 120.00343 * 2 1 3 35 35 H 1.08998 * 109.46907 * 239.99560 * 2 1 3 36 36 H 1.08996 * 109.58791 * 294.37937 * 5 3 2 37 37 H 1.09003 * 109.57880 * 54.65955 * 5 3 2 38 38 H 1.09006 * 109.46974 * 64.83994 * 10 9 7 39 39 H 1.08988 * 109.47642 * 184.84183 * 10 9 7 40 40 H 1.09004 * 109.46789 * 304.85004 * 10 9 7 41 41 H 1.08998 * 109.46349 * 54.58936 * 11 9 7 42 42 H 1.08994 * 109.47041 * 174.58864 * 11 9 7 43 43 H 1.08996 * 109.46955 * 294.59319 * 11 9 7 44 44 H 1.07999 * 120.79239 * 0.02562 * 13 12 9 45 45 H 1.08008 * 120.41822 * 180.26939 * 14 13 12 46 46 H 1.07995 * 119.62225 * 179.79464 * 15 14 13 47 47 H 1.08006 * 119.61818 * 179.97438 * 17 16 15 48 48 H 1.09005 * 109.58857 * 173.39788 * 18 6 5 49 49 H 1.08994 * 109.59086 * 293.67922 * 18 6 5 50 50 H 1.08993 * 109.49849 * 65.31869 * 19 18 6 51 51 H 1.09004 * 109.49839 * 185.38356 * 19 18 6 52 52 H 0.97000 * 119.99656 * 335.00065 * 22 20 3 53 53 H 0.97005 * 119.99982 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6058 1.9819 -0.8417 5 6 1.6365 2.1275 1.3094 6 7 2.2431 3.4651 1.3497 7 6 1.4835 4.5573 1.5653 8 8 0.2764 4.4547 1.6235 9 6 2.1340 5.9062 1.7340 10 6 1.0661 6.9489 2.0709 11 6 3.1582 5.8401 2.8688 12 6 2.8276 6.2932 0.4534 13 6 3.6385 7.4171 0.4059 14 6 4.2600 7.7321 -0.7925 15 6 4.0444 6.9269 -1.8951 16 7 3.2624 5.8682 -1.8146 17 6 2.6585 5.5361 -0.6902 18 6 3.6935 3.5893 1.1512 19 6 4.0740 2.8879 -0.1565 20 6 3.5654 1.4448 -0.1242 21 1 3.8558 0.9363 -1.0435 22 7 4.1497 0.7477 1.0243 23 6 5.3875 0.1720 0.9185 24 1 5.9331 0.2314 -0.0117 25 6 5.9409 -0.4890 2.0065 26 7 5.2759 -0.5618 3.1400 27 14 7.6293 -1.2750 1.8620 28 1 8.1626 -1.0543 0.4937 29 1 8.5471 -0.6631 2.8562 30 1 7.5202 -2.7333 2.1209 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5139 0.8900 35 1 1.8933 -0.5139 -0.8899 36 1 0.5512 2.2169 1.3556 37 1 1.9910 1.5376 2.1547 38 1 0.6238 6.7161 3.0396 39 1 1.5228 7.9377 2.1083 40 1 0.2908 6.9353 1.3049 41 1 3.8637 5.0322 2.6748 42 1 3.6964 6.7861 2.9280 43 1 2.6441 5.6549 3.8119 44 1 3.7855 8.0301 1.2828 45 1 4.9019 8.5977 -0.8646 46 1 4.5222 7.1673 -2.8333 47 1 2.0249 4.6619 -0.6627 48 1 3.9655 4.6433 1.0931 49 1 4.2178 3.1222 1.9848 50 1 3.6211 3.4141 -0.9967 51 1 5.1583 2.8895 -0.2681 52 1 3.6596 0.6941 1.8597 53 1 5.6624 -1.0241 3.9003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037873423.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:24 Heat of formation + Delta-G solvation = 0.661027 kcal Electronic energy + Delta-G solvation = -33230.003438 eV Core-core repulsion = 29294.329896 eV Total energy + Delta-G solvation = -3935.673543 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.55510 -40.62326 -39.42979 -36.86106 -35.84751 -35.27139 -33.43034 -32.97663 -31.33775 -30.95609 -30.08729 -28.17931 -27.07295 -25.64083 -25.11242 -24.87662 -24.33262 -22.69805 -22.05393 -20.46233 -19.73851 -19.28778 -18.46922 -17.86155 -17.42340 -16.88412 -16.67306 -16.24798 -15.87800 -15.80092 -15.69642 -15.19156 -15.13825 -14.82701 -14.58586 -14.56789 -14.26374 -14.17927 -14.03101 -13.79825 -13.60191 -13.30419 -13.14027 -13.05998 -12.94469 -12.88475 -12.77734 -12.65256 -12.48512 -12.26264 -12.19163 -12.08012 -11.99475 -11.79113 -11.59532 -11.47364 -11.15102 -10.90609 -10.76687 -10.60392 -10.32157 -9.82975 -9.61146 -8.92272 -7.88959 -5.14908 0.14133 0.37564 1.47591 1.49215 1.49596 1.57751 1.95327 2.59104 2.85668 3.26310 3.37433 3.44707 3.68570 3.72577 3.83100 3.91016 3.97846 4.00522 4.05209 4.09112 4.10164 4.24015 4.28828 4.32483 4.41997 4.44377 4.55653 4.60453 4.67111 4.69663 4.75529 4.79993 4.82420 4.85017 4.85619 4.93829 4.98369 5.01754 5.13495 5.14276 5.18065 5.21488 5.25773 5.27777 5.28380 5.31512 5.39159 5.49264 5.59178 5.63459 5.78488 6.32777 6.40314 7.05090 7.06682 7.40710 8.15437 8.40971 9.34329 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.010517 B = 0.004189 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.634970 B = 6682.888943 C = 7573.568626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 C -0.091 4.091 4 H 0.077 0.923 5 C 0.123 3.877 6 N -0.597 5.597 7 C 0.518 3.482 8 O -0.575 6.575 9 C -0.030 4.030 10 C -0.118 4.118 11 C -0.155 4.155 12 C -0.132 4.132 13 C -0.064 4.064 14 C -0.159 4.159 15 C 0.083 3.917 16 N -0.506 5.506 17 C 0.090 3.910 18 C 0.119 3.881 19 C -0.143 4.143 20 C 0.176 3.824 21 H 0.042 0.958 22 N -0.721 5.721 23 C -0.225 4.225 24 H 0.071 0.929 25 C -0.069 4.069 26 N -0.967 5.967 27 Si 0.961 3.039 28 H -0.270 1.270 29 H -0.297 1.297 30 H -0.300 1.300 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.047 0.953 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.062 0.938 39 H 0.093 0.907 40 H 0.048 0.952 41 H 0.063 0.937 42 H 0.102 0.898 43 H 0.066 0.934 44 H 0.168 0.832 45 H 0.173 0.827 46 H 0.178 0.822 47 H 0.129 0.871 48 H 0.103 0.897 49 H 0.054 0.946 50 H 0.071 0.929 51 H 0.057 0.943 52 H 0.374 0.626 53 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.504 19.421 -5.796 20.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.143 4.143 3 C -0.111 4.111 4 H 0.096 0.904 5 C 0.001 3.999 6 N -0.328 5.328 7 C 0.307 3.693 8 O -0.455 6.455 9 C -0.034 4.034 10 C -0.175 4.175 11 C -0.212 4.212 12 C -0.134 4.134 13 C -0.089 4.089 14 C -0.178 4.178 15 C -0.074 4.074 16 N -0.214 5.214 17 C -0.066 4.066 18 C -0.003 4.003 19 C -0.183 4.183 20 C 0.067 3.933 21 H 0.060 0.940 22 N -0.362 5.362 23 C -0.358 4.358 24 H 0.089 0.911 25 C -0.261 4.261 26 N -0.618 5.618 27 Si 0.792 3.208 28 H -0.194 1.194 29 H -0.224 1.224 30 H -0.227 1.227 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.112 0.888 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.121 0.879 43 H 0.085 0.915 44 H 0.185 0.815 45 H 0.190 0.810 46 H 0.195 0.805 47 H 0.146 0.854 48 H 0.121 0.879 49 H 0.073 0.927 50 H 0.089 0.911 51 H 0.076 0.924 52 H 0.208 0.792 53 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.097 18.771 -6.606 20.542 hybrid contribution 0.916 -0.834 1.204 1.728 sum -4.181 17.937 -5.402 19.194 Atomic orbital electron populations 1.21777 0.94664 1.01977 1.01825 1.21333 0.96128 0.95019 1.01797 1.21627 0.95655 0.96611 0.97188 0.90421 1.21538 0.98706 0.82102 0.97602 1.48126 1.08680 1.06348 1.69597 1.20964 0.86685 0.86609 0.75038 1.90640 1.15346 1.86729 1.52836 1.19697 0.97193 0.91843 0.94635 1.21670 0.96536 0.97393 1.01912 1.22291 0.97906 1.04928 0.96089 1.20499 1.00221 0.97988 0.94736 1.21745 0.92992 0.94381 0.99790 1.22508 1.00677 1.01902 0.92736 1.23336 0.93939 0.89751 1.00350 1.67679 1.08600 1.17796 1.27350 1.22603 0.97156 0.98215 0.88657 1.21927 0.78928 1.01484 0.97952 1.22454 1.00796 0.98070 0.97003 1.20371 0.91131 0.91116 0.90650 0.94021 1.42534 1.18208 1.64181 1.11272 1.19557 0.94284 1.25237 0.96684 0.91099 1.25329 1.01658 1.03095 0.96049 1.69804 1.39440 1.49729 1.02837 0.85247 0.80824 0.77433 0.77304 1.19410 1.22408 1.22725 0.93087 0.92057 0.92017 0.93435 0.92108 0.89483 0.92983 0.91858 0.88789 0.93313 0.91839 0.87937 0.91520 0.81451 0.80996 0.80535 0.85382 0.87901 0.92750 0.91058 0.92444 0.79192 0.94350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.96 9.67 71.98 0.70 -3.26 16 2 C -0.10 -3.45 5.19 30.59 0.16 -3.30 16 3 C -0.09 -3.06 2.14 -10.72 -0.02 -3.08 16 4 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 5 C 0.12 4.28 5.03 86.36 0.43 4.72 16 6 N -0.60 -19.28 2.31 -818.92 -1.89 -21.16 16 7 C 0.52 16.14 4.98 87.66 0.44 16.58 16 8 O -0.58 -21.23 15.31 -3.05 -0.05 -21.28 16 9 C -0.03 -0.68 0.60 -53.67 -0.03 -0.72 16 10 C -0.12 -2.34 7.80 71.98 0.56 -1.77 16 11 C -0.16 -3.08 7.96 71.98 0.57 -2.51 16 12 C -0.13 -2.85 3.04 -19.77 -0.06 -2.91 16 13 C -0.06 -0.95 8.85 22.47 0.20 -0.75 16 14 C -0.16 -2.12 10.11 22.36 0.23 -1.89 16 15 C 0.08 1.51 11.18 84.69 0.95 2.46 16 16 N -0.51 -12.98 10.25 -195.84 -2.01 -14.99 16 17 C 0.09 2.40 6.88 84.67 0.58 2.98 16 18 C 0.12 3.85 3.31 86.37 0.29 4.13 16 19 C -0.14 -4.90 5.46 30.67 0.17 -4.74 16 20 C 0.18 6.76 2.53 45.02 0.11 6.87 16 21 H 0.04 1.67 8.08 -2.39 -0.02 1.66 16 22 N -0.72 -33.84 3.73 -322.81 -1.20 -35.05 16 23 C -0.23 -11.89 9.93 84.04 0.83 -11.06 16 24 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 25 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 26 N -0.97 -57.30 13.06 21.65 0.28 -57.01 16 27 Si 0.96 45.33 29.55 68.60 2.03 47.36 16 28 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 29 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 30 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 31 H 0.05 1.41 6.70 -2.39 -0.02 1.40 16 32 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.05 1.85 7.70 -2.39 -0.02 1.83 16 35 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.09 3.02 5.72 -2.39 -0.01 3.01 16 37 H 0.05 2.06 6.65 -2.39 -0.02 2.04 16 38 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.09 1.23 7.81 -2.39 -0.02 1.21 16 40 H 0.05 1.14 7.90 -2.38 -0.02 1.12 16 41 H 0.06 1.51 4.67 -2.39 -0.01 1.50 16 42 H 0.10 1.32 6.85 -2.39 -0.02 1.30 16 43 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.17 1.38 7.15 -2.91 -0.02 1.36 16 45 H 0.17 1.01 8.06 -2.91 -0.02 0.99 16 46 H 0.18 2.21 8.06 -2.91 -0.02 2.18 16 47 H 0.13 4.00 5.40 -2.91 -0.02 3.99 16 48 H 0.10 2.86 3.25 -2.38 -0.01 2.85 16 49 H 0.05 2.10 7.57 -2.39 -0.02 2.08 16 50 H 0.07 2.31 5.72 -2.39 -0.01 2.30 16 51 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 52 H 0.37 19.08 5.95 -92.71 -0.55 18.53 16 53 H 0.25 14.40 8.31 -92.70 -0.77 13.63 16 Total: -1.00 -67.38 392.03 4.10 -63.28 By element: Atomic # 1 Polarization: 40.08 SS G_CDS: 0.37 Total: 40.44 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: 6.57 Total: -1.60 kcal Atomic # 7 Polarization: -123.40 SS G_CDS: -4.82 Total: -128.22 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.05 Total: -21.28 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -67.38 4.10 -63.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037873423.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.941 kcal (2) G-P(sol) polarization free energy of solvation -67.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds