Wall clock time and date at job start Wed Apr 1 2020 04:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47395 * 2 1 4 4 H 1.09003 * 109.49885 * 305.06752 * 3 2 1 5 5 C 1.53632 * 109.42959 * 65.28580 * 3 2 1 6 6 N 1.46926 * 108.54024 * 174.72351 * 5 3 2 7 7 C 1.34779 * 120.62426 * 126.37281 * 6 5 3 8 8 O 1.21274 * 120.00472 * 3.80519 * 7 6 5 9 9 C 1.50702 * 119.99478 * 183.80683 * 7 6 5 10 10 C 1.52999 * 109.46848 * 177.97453 * 9 7 6 11 11 C 1.52997 * 109.47370 * 297.97186 * 9 7 6 12 12 C 1.50703 * 109.47120 * 57.97644 * 9 7 6 13 13 C 1.38673 * 120.41427 * 195.71885 * 12 9 7 14 14 C 1.38626 * 118.41823 * 179.78316 * 13 12 9 15 15 C 1.38231 * 119.16055 * 0.50835 * 14 13 12 16 16 N 1.31857 * 120.76356 * 359.72999 * 15 14 13 17 17 C 1.31891 * 121.72372 * 359.97438 * 16 15 14 18 18 C 1.46921 * 118.74014 * 306.09816 * 6 5 3 19 19 C 1.53190 * 108.77870 * 53.86338 * 18 6 5 20 20 C 1.53038 * 109.50079 * 184.99775 * 3 2 1 21 21 H 1.08998 * 109.45963 * 298.70959 * 20 3 2 22 22 N 1.46503 * 109.45445 * 58.66344 * 20 3 2 23 23 C 1.36941 * 119.99449 * 205.06410 * 22 20 3 24 24 H 1.07997 * 120.00205 * 0.02562 * 23 22 20 25 25 C 1.38819 * 119.99410 * 180.02562 * 23 22 20 26 26 N 1.31616 * 120.00234 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99494 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47214 * 89.99776 * 27 25 23 29 29 H 1.48500 * 109.46920 * 209.99576 * 27 25 23 30 30 H 1.48497 * 109.47474 * 329.99853 * 27 25 23 31 31 H 1.08993 * 109.47117 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47062 * 300.00133 * 1 2 3 33 33 H 1.08998 * 109.46870 * 59.99953 * 1 2 3 34 34 H 1.08999 * 109.47394 * 240.00299 * 2 1 3 35 35 H 1.08998 * 109.46870 * 120.00046 * 2 1 3 36 36 H 1.09001 * 109.73638 * 54.99166 * 5 3 2 37 37 H 1.08997 * 109.66311 * 294.42044 * 5 3 2 38 38 H 1.09006 * 109.47244 * 179.63858 * 10 9 7 39 39 H 1.08997 * 109.47190 * 299.63582 * 10 9 7 40 40 H 1.09000 * 109.47356 * 59.63690 * 10 9 7 41 41 H 1.08996 * 109.47523 * 292.69650 * 11 9 7 42 42 H 1.09008 * 109.46948 * 52.69195 * 11 9 7 43 43 H 1.09003 * 109.47301 * 172.69201 * 11 9 7 44 44 H 1.08003 * 120.79259 * 0.02562 * 13 12 9 45 45 H 1.08006 * 120.42229 * 180.21663 * 14 13 12 46 46 H 1.07999 * 119.61982 * 179.74649 * 15 14 13 47 47 H 1.07996 * 119.61704 * 180.02562 * 17 16 15 48 48 H 1.09002 * 109.58245 * 173.65059 * 18 6 5 49 49 H 1.09007 * 109.58786 * 293.92841 * 18 6 5 50 50 H 1.08993 * 109.50106 * 65.31065 * 19 18 6 51 51 H 1.08998 * 109.49796 * 185.38222 * 19 18 6 52 52 H 0.96995 * 120.00649 * 25.07100 * 22 20 3 53 53 H 0.97000 * 119.99990 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6048 1.9823 -0.8410 5 6 1.6394 2.1263 1.3161 6 7 2.2452 3.4644 1.3508 7 6 1.4858 4.5564 1.5682 8 8 0.3029 4.4349 1.8061 9 6 2.1069 5.9285 1.5158 10 6 1.0259 6.9866 1.7457 11 6 3.1757 6.0466 2.6041 12 6 2.7396 6.1422 0.1648 13 6 3.6454 7.1738 -0.0309 14 6 4.2059 7.3298 -1.2892 15 6 3.8378 6.4646 -2.3025 16 7 2.9693 5.4975 -2.0812 17 6 2.4206 5.3159 -0.8957 18 6 3.6953 3.5887 1.1499 19 6 4.0737 2.8882 -0.1588 20 6 3.5653 1.4450 -0.1257 21 1 4.0009 0.9260 0.7281 22 7 3.9542 0.7620 -1.3620 23 6 5.1918 0.1851 -1.4653 24 1 5.8810 0.2333 -0.6352 25 6 5.5605 -0.4616 -2.6370 26 7 4.7207 -0.5199 -3.6487 27 14 7.2485 -1.2492 -2.7775 28 1 7.1772 -2.6586 -2.3152 29 1 7.6944 -1.2148 -4.1936 30 1 8.2158 -0.5004 -1.9357 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.0008 1.5396 2.1607 37 1 0.5542 2.2149 1.3678 38 1 1.4762 7.9789 1.7142 39 1 0.2678 6.9068 0.9667 40 1 0.5638 6.8282 2.7201 41 1 2.7003 6.0217 3.5846 42 1 3.8751 5.2148 2.5182 43 1 3.7135 6.9872 2.4847 44 1 3.9110 7.8375 0.7787 45 1 4.9177 8.1202 -1.4767 46 1 4.2668 6.5819 -3.2866 47 1 1.7132 4.5125 -0.7524 48 1 3.9670 4.6427 1.0920 49 1 4.2210 3.1211 1.9825 50 1 3.6193 3.4147 -0.9980 51 1 5.1578 2.8899 -0.2721 52 1 3.3351 0.7185 -2.1075 53 1 4.9782 -0.9721 -4.4673 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037873424.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:29 Heat of formation + Delta-G solvation = -0.915148 kcal Electronic energy + Delta-G solvation = -33052.700340 eV Core-core repulsion = 29116.958449 eV Total energy + Delta-G solvation = -3935.741891 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.52556 -40.57174 -39.33715 -36.87530 -36.13949 -35.20530 -33.46167 -32.98752 -31.26993 -31.05661 -30.17958 -28.19532 -27.08742 -25.60268 -24.96960 -24.51116 -24.23000 -22.54239 -22.10189 -21.04365 -19.96859 -19.08321 -18.48201 -17.91151 -17.44531 -16.91577 -16.79791 -16.18891 -15.83402 -15.68102 -15.62974 -15.23487 -15.16611 -14.74969 -14.67918 -14.55491 -14.40996 -14.12254 -13.90516 -13.78868 -13.55003 -13.37439 -13.13256 -13.05121 -12.97037 -12.84694 -12.80304 -12.65369 -12.54995 -12.24643 -12.16135 -12.05712 -12.03140 -11.81778 -11.57861 -11.52892 -11.12016 -10.91039 -10.79142 -10.55309 -10.29255 -9.84851 -9.66300 -8.94526 -7.89774 -5.17329 0.13476 0.39047 1.46847 1.48193 1.50029 1.56196 1.94773 2.57798 2.85378 3.27636 3.37838 3.43088 3.67461 3.72775 3.77332 3.90867 3.95901 4.02081 4.04447 4.07601 4.09260 4.22433 4.29579 4.31863 4.39239 4.44255 4.59440 4.62806 4.68327 4.75074 4.77255 4.79158 4.79859 4.83536 4.86612 4.88227 4.95762 5.00182 5.05244 5.12687 5.15315 5.23426 5.26545 5.28661 5.33561 5.38666 5.44612 5.51443 5.58428 5.65015 5.78454 6.30579 6.36899 7.07327 7.09073 7.37170 8.13603 8.37360 9.33795 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.010904 B = 0.004197 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.285992 B = 6669.560174 C = 8136.612671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C -0.090 4.090 4 H 0.045 0.955 5 C 0.124 3.876 6 N -0.601 5.601 7 C 0.519 3.481 8 O -0.575 6.575 9 C -0.030 4.030 10 C -0.119 4.119 11 C -0.156 4.156 12 C -0.129 4.129 13 C -0.060 4.060 14 C -0.158 4.158 15 C 0.078 3.922 16 N -0.515 5.515 17 C 0.096 3.904 18 C 0.104 3.896 19 C -0.150 4.150 20 C 0.183 3.817 21 H 0.045 0.955 22 N -0.729 5.729 23 C -0.229 4.229 24 H 0.075 0.925 25 C -0.075 4.075 26 N -0.970 5.970 27 Si 0.966 3.034 28 H -0.289 1.289 29 H -0.300 1.300 30 H -0.269 1.269 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.042 0.958 34 H 0.045 0.955 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.039 0.961 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.102 0.898 44 H 0.177 0.823 45 H 0.173 0.827 46 H 0.164 0.836 47 H 0.118 0.882 48 H 0.111 0.889 49 H 0.086 0.914 50 H 0.058 0.942 51 H 0.054 0.946 52 H 0.369 0.631 53 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.310 19.120 14.577 24.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.111 4.111 4 H 0.064 0.936 5 C 0.001 3.999 6 N -0.332 5.332 7 C 0.308 3.692 8 O -0.454 6.454 9 C -0.034 4.034 10 C -0.176 4.176 11 C -0.212 4.212 12 C -0.132 4.132 13 C -0.086 4.086 14 C -0.177 4.177 15 C -0.079 4.079 16 N -0.224 5.224 17 C -0.060 4.060 18 C -0.019 4.019 19 C -0.191 4.191 20 C 0.075 3.925 21 H 0.063 0.937 22 N -0.367 5.367 23 C -0.361 4.361 24 H 0.093 0.907 25 C -0.267 4.267 26 N -0.621 5.621 27 Si 0.796 3.204 28 H -0.217 1.217 29 H -0.227 1.227 30 H -0.193 1.193 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.112 0.888 39 H 0.059 0.941 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.121 0.879 44 H 0.195 0.805 45 H 0.190 0.810 46 H 0.181 0.819 47 H 0.136 0.864 48 H 0.129 0.871 49 H 0.104 0.896 50 H 0.077 0.923 51 H 0.073 0.927 52 H 0.200 0.800 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.975 18.419 14.067 23.367 hybrid contribution 0.686 -0.719 -0.750 1.245 sum -2.288 17.700 13.318 22.268 Atomic orbital electron populations 1.21769 0.94875 1.01938 1.01614 1.21353 0.96061 0.95156 1.01925 1.21682 0.95808 0.96461 0.97100 0.93610 1.21752 0.99314 0.82039 0.96754 1.48167 1.08804 1.06487 1.69780 1.20958 0.86095 0.86950 0.75152 1.90654 1.17042 1.87245 1.50488 1.19714 0.97953 0.91834 0.93870 1.21666 0.96333 0.97366 1.02235 1.22348 0.97057 1.05262 0.96554 1.20528 0.99675 0.98081 0.94882 1.21794 0.92865 0.95480 0.98454 1.22487 1.01178 1.00952 0.93074 1.23225 0.93224 0.90334 1.01109 1.67661 1.10011 1.20673 1.24016 1.22408 0.97474 0.97414 0.88744 1.22278 0.79266 1.02875 0.97434 1.22618 1.00633 0.98202 0.97652 1.20356 0.92295 0.91040 0.88835 0.93679 1.42555 1.15488 1.64859 1.13815 1.19562 0.92622 1.25691 0.98258 0.90677 1.25465 1.01522 1.03227 0.96462 1.69833 1.37118 1.50055 1.05116 0.85236 0.80459 0.78418 0.76252 1.21666 1.22715 1.19337 0.91995 0.91633 0.93880 0.93624 0.91525 0.89863 0.89458 0.88827 0.94137 0.91383 0.90607 0.90725 0.87923 0.80528 0.80976 0.81850 0.86422 0.87136 0.89613 0.92289 0.92749 0.79959 0.94355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.13 9.68 71.98 0.70 -3.43 16 2 C -0.11 -3.62 5.31 30.60 0.16 -3.45 16 3 C -0.09 -3.10 1.94 -10.57 -0.02 -3.12 16 4 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 5 C 0.12 3.55 5.34 86.51 0.46 4.02 16 6 N -0.60 -16.13 2.24 -818.06 -1.83 -17.96 16 7 C 0.52 14.05 5.02 87.66 0.44 14.49 16 8 O -0.57 -19.24 15.41 -3.01 -0.05 -19.28 16 9 C -0.03 -0.57 0.62 -53.67 -0.03 -0.61 16 10 C -0.12 -2.08 7.71 71.98 0.55 -1.52 16 11 C -0.16 -1.93 7.88 71.98 0.57 -1.36 16 12 C -0.13 -2.71 2.82 -19.77 -0.06 -2.76 16 13 C -0.06 -0.88 9.21 22.47 0.21 -0.67 16 14 C -0.16 -2.47 10.11 22.36 0.23 -2.25 16 15 C 0.08 1.85 11.18 84.69 0.95 2.80 16 16 N -0.51 -16.42 9.90 -195.84 -1.94 -18.36 16 17 C 0.10 2.83 6.79 84.67 0.57 3.41 16 18 C 0.10 2.61 3.87 86.36 0.33 2.94 16 19 C -0.15 -5.21 5.44 30.67 0.17 -5.04 16 20 C 0.18 7.12 2.19 45.02 0.10 7.22 16 21 H 0.05 1.76 8.08 -2.39 -0.02 1.74 16 22 N -0.73 -36.60 4.33 -322.80 -1.40 -37.99 16 23 C -0.23 -12.57 9.93 84.03 0.83 -11.74 16 24 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 25 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 26 N -0.97 -60.30 13.06 21.65 0.28 -60.02 16 27 Si 0.97 46.33 29.55 68.60 2.03 48.35 16 28 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 29 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 30 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 31 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.06 1.66 6.70 -2.39 -0.02 1.64 16 33 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.04 1.90 7.22 -2.39 -0.02 1.88 16 35 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.09 2.61 5.76 -2.39 -0.01 2.60 16 38 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 39 H 0.04 0.89 8.12 -2.39 -0.02 0.87 16 40 H 0.07 1.21 8.07 -2.39 -0.02 1.19 16 41 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.07 1.00 4.80 -2.38 -0.01 0.99 16 43 H 0.10 0.65 6.45 -2.39 -0.02 0.63 16 44 H 0.18 1.08 6.70 -2.91 -0.02 1.06 16 45 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 46 H 0.16 3.31 8.06 -2.91 -0.02 3.28 16 47 H 0.12 4.10 6.23 -2.91 -0.02 4.09 16 48 H 0.11 2.35 3.23 -2.39 -0.01 2.35 16 49 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 50 H 0.06 2.28 5.20 -2.39 -0.01 2.27 16 51 H 0.05 2.04 8.14 -2.39 -0.02 2.03 16 52 H 0.37 20.66 7.51 -92.71 -0.70 19.96 16 53 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -73.73 395.94 3.95 -69.79 By element: Atomic # 1 Polarization: 40.16 SS G_CDS: 0.22 Total: 40.38 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: 6.63 Total: -4.91 kcal Atomic # 7 Polarization: -129.45 SS G_CDS: -4.88 Total: -134.33 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.05 Total: -19.28 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.35 kcal Total: -73.73 3.95 -69.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037873424.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.871 kcal (2) G-P(sol) polarization free energy of solvation -73.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds