Wall clock time and date at job start Wed Apr 1 2020 04:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46565 * 2 1 4 4 H 1.08990 * 109.49861 * 55.06560 * 3 2 1 5 5 C 1.53196 * 109.49571 * 294.99682 * 3 2 1 6 6 N 1.46928 * 108.77008 * 185.38036 * 5 3 2 7 7 C 1.34773 * 120.62875 * 233.58462 * 6 5 3 8 8 O 1.21277 * 120.00477 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99783 * 180.02562 * 7 6 5 10 10 C 1.52999 * 109.47171 * 180.02562 * 9 7 6 11 11 C 1.50697 * 109.47555 * 180.02562 * 10 9 7 12 12 C 1.38229 * 120.41639 * 269.98461 * 11 10 9 13 13 N 1.31860 * 120.76173 * 180.02562 * 12 11 10 14 14 C 1.31892 * 121.72147 * 359.69570 * 13 12 11 15 15 C 1.38172 * 120.76674 * 0.58961 * 14 13 12 16 16 C 1.50706 * 120.42005 * 179.70175 * 15 14 13 17 17 C 1.38625 * 120.42028 * 89.99592 * 11 10 9 18 18 C 1.46925 * 118.73822 * 53.86935 * 6 5 3 19 19 C 1.53628 * 108.53971 * 306.08516 * 18 6 5 20 20 C 1.53039 * 109.52162 * 175.14860 * 3 2 1 21 21 H 1.09002 * 109.46079 * 301.34921 * 20 3 2 22 22 N 1.46497 * 109.46457 * 61.30896 * 20 3 2 23 23 C 1.36939 * 120.00209 * 204.99998 * 22 20 3 24 24 H 1.07996 * 119.99728 * 0.02562 * 23 22 20 25 25 C 1.38811 * 119.99669 * 180.02562 * 23 22 20 26 26 N 1.31620 * 119.99844 * 180.02562 * 25 23 22 27 27 Si 1.86797 * 120.00478 * 359.97438 * 25 23 22 28 28 H 1.48504 * 109.46736 * 90.00203 * 27 25 23 29 29 H 1.48500 * 109.47486 * 210.00161 * 27 25 23 30 30 H 1.48498 * 109.47157 * 330.00856 * 27 25 23 31 31 H 1.08999 * 109.46431 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47182 * 299.99836 * 1 2 3 33 33 H 1.08997 * 109.47155 * 60.00362 * 1 2 3 34 34 H 1.08997 * 109.47182 * 240.00164 * 2 1 3 35 35 H 1.08997 * 109.47155 * 119.99638 * 2 1 3 36 36 H 1.09001 * 109.58297 * 65.60275 * 5 3 2 37 37 H 1.08988 * 109.70557 * 305.24057 * 5 3 2 38 38 H 1.09004 * 109.46946 * 60.00503 * 9 7 6 39 39 H 1.09000 * 109.47307 * 299.99891 * 9 7 6 40 40 H 1.09008 * 109.47293 * 60.00192 * 10 9 7 41 41 H 1.08999 * 109.47265 * 300.00724 * 10 9 7 42 42 H 1.07994 * 119.62183 * 359.97438 * 12 11 10 43 43 H 1.08002 * 119.60976 * 180.32105 * 14 13 12 44 44 H 1.08999 * 109.47015 * 269.72693 * 16 15 14 45 45 H 1.09000 * 109.46646 * 29.71845 * 16 15 14 46 46 H 1.09000 * 109.47248 * 149.72563 * 16 15 14 47 47 H 1.07998 * 120.78871 * 0.02562 * 17 11 10 48 48 H 1.08992 * 109.58994 * 65.91941 * 18 6 5 49 49 H 1.08997 * 109.58498 * 186.34824 * 18 6 5 50 50 H 1.08995 * 109.63560 * 294.86527 * 19 18 6 51 51 H 1.09000 * 109.45703 * 174.74260 * 19 18 6 52 52 H 0.97003 * 119.99606 * 25.00026 * 22 20 3 53 53 H 0.96999 * 120.00325 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6064 1.9817 0.8423 5 6 1.6349 2.1280 -1.3089 6 7 2.2406 3.4660 -1.3490 7 6 1.4802 4.5579 -1.5635 8 8 0.2839 4.4415 -1.7251 9 6 2.1165 5.9234 -1.6024 10 6 1.0403 6.9804 -1.8585 11 6 1.6766 8.3459 -1.8980 12 6 1.8029 9.0929 -0.7418 13 7 2.3580 10.2886 -0.7687 14 6 2.8171 10.8151 -1.8874 15 6 2.7201 10.1295 -3.0831 16 6 3.2412 10.7413 -4.3580 17 6 2.1423 8.8689 -3.0944 18 6 3.6920 3.5905 -1.1571 19 6 4.0731 2.8892 0.1555 20 6 3.5654 1.4458 0.1220 21 1 3.8574 0.9369 1.0406 22 7 4.1485 0.7499 -1.0277 23 6 5.3870 0.1747 -0.9239 24 1 5.9336 0.2339 0.0056 25 6 5.9396 -0.4842 -2.0135 26 7 7.1297 -1.0375 -1.9136 27 14 4.9938 -0.5871 -3.6210 28 1 5.3339 0.5821 -4.4710 29 1 5.3597 -1.8388 -4.3315 30 1 3.5360 -0.5863 -3.3385 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 0.5495 2.2169 -1.3541 37 1 1.9892 1.5410 -2.1560 38 1 2.8565 5.9568 -2.4020 39 1 2.6032 6.1249 -0.6481 40 1 0.3005 6.9470 -1.0586 41 1 0.5531 6.7792 -2.8125 42 1 1.4421 8.6929 0.1942 43 1 3.2702 11.7953 -1.8693 44 1 2.4466 11.3122 -4.8383 45 1 4.0763 11.4032 -4.1284 46 1 3.5776 9.9511 -5.0292 47 1 2.0565 8.3082 -4.0134 48 1 4.2125 3.1194 -1.9908 49 1 3.9642 4.6445 -1.1023 50 1 3.6205 3.4147 0.9964 51 1 5.1575 2.8909 0.2666 52 1 3.6574 0.6965 -1.8624 53 1 7.5161 -1.4977 -2.6751 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037882179.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:56 Heat of formation + Delta-G solvation = -25.998690 kcal Electronic energy + Delta-G solvation = -30765.515096 eV Core-core repulsion = 26828.685501 eV Total energy + Delta-G solvation = -3936.829595 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.55782 -41.11228 -39.35451 -35.95457 -35.69741 -35.30887 -34.47774 -33.55778 -31.52570 -31.44262 -29.93022 -28.15799 -27.09934 -25.61608 -24.99014 -24.87549 -23.87034 -22.15842 -21.82217 -20.72284 -19.88202 -19.51548 -18.21732 -17.81665 -17.66097 -17.04621 -16.77267 -16.45887 -16.01164 -15.71671 -15.26068 -15.16770 -15.10549 -14.91444 -14.79502 -14.40723 -14.26580 -14.07988 -14.02638 -13.95403 -13.70184 -13.62557 -13.33532 -13.19657 -13.16681 -12.97399 -12.80172 -12.67765 -12.46743 -12.43235 -12.15775 -12.01735 -11.96946 -11.87082 -11.61607 -11.53080 -11.17386 -10.96960 -10.77811 -10.50198 -10.36374 -9.71350 -9.62997 -9.23134 -7.98447 -5.29119 0.14684 0.33401 1.35995 1.37025 1.44507 1.62265 2.01376 2.48739 2.82642 3.33615 3.38440 3.60754 3.61620 3.75351 3.83889 3.91223 3.96629 4.02402 4.03316 4.06891 4.14304 4.19481 4.25493 4.29525 4.37397 4.43624 4.47177 4.57646 4.59038 4.68358 4.69652 4.80869 4.82047 4.87231 4.88442 4.95660 4.97254 5.02625 5.13598 5.15147 5.19507 5.22380 5.23678 5.29118 5.33253 5.37476 5.38658 5.47840 5.64483 5.81636 5.84293 6.25767 6.45402 7.03896 7.12499 7.15508 7.89501 8.07665 9.23565 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.011854 B = 0.002666 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.561293 B =10498.317241 C =11670.520703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.094 4.094 4 H 0.090 0.910 5 C 0.119 3.881 6 N -0.606 5.606 7 C 0.513 3.487 8 O -0.582 6.582 9 C -0.127 4.127 10 C -0.051 4.051 11 C -0.127 4.127 12 C 0.082 3.918 13 N -0.507 5.507 14 C 0.077 3.923 15 C -0.136 4.136 16 C -0.109 4.109 17 C -0.083 4.083 18 C 0.116 3.884 19 C -0.143 4.143 20 C 0.176 3.824 21 H 0.048 0.952 22 N -0.742 5.742 23 C -0.210 4.210 24 H 0.061 0.939 25 C -0.060 4.060 26 N -0.985 5.985 27 Si 0.939 3.061 28 H -0.280 1.280 29 H -0.302 1.302 30 H -0.258 1.258 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.046 0.954 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.047 0.953 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.164 0.836 43 H 0.171 0.829 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.147 0.853 48 H 0.056 0.944 49 H 0.109 0.891 50 H 0.080 0.920 51 H 0.064 0.936 52 H 0.362 0.638 53 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.770 21.717 -0.855 25.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.114 4.114 4 H 0.108 0.892 5 C -0.003 4.003 6 N -0.338 5.338 7 C 0.303 3.697 8 O -0.463 6.463 9 C -0.167 4.167 10 C -0.089 4.089 11 C -0.129 4.129 12 C -0.075 4.075 13 N -0.215 5.215 14 C -0.079 4.079 15 C -0.138 4.138 16 C -0.166 4.166 17 C -0.109 4.109 18 C -0.007 4.007 19 C -0.183 4.183 20 C 0.068 3.932 21 H 0.066 0.934 22 N -0.386 5.386 23 C -0.341 4.341 24 H 0.079 0.921 25 C -0.251 4.251 26 N -0.636 5.636 27 Si 0.768 3.232 28 H -0.207 1.207 29 H -0.229 1.229 30 H -0.183 1.183 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.066 0.934 38 H 0.125 0.875 39 H 0.131 0.869 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.181 0.819 43 H 0.188 0.812 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.093 0.907 47 H 0.165 0.835 48 H 0.074 0.926 49 H 0.127 0.873 50 H 0.098 0.902 51 H 0.082 0.918 52 H 0.196 0.804 53 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.135 22.072 -0.050 25.684 hybrid contribution 0.104 -1.313 -1.811 2.239 sum -13.031 20.759 -1.861 24.580 Atomic orbital electron populations 1.21789 0.94573 1.02002 1.02029 1.21408 0.96289 0.95273 1.01926 1.21690 0.95295 0.96585 0.97802 0.89218 1.21551 0.99153 0.82389 0.97250 1.48232 1.08819 1.06431 1.70278 1.21143 0.86474 0.87022 0.75021 1.90655 1.16358 1.87275 1.51968 1.21691 0.99627 0.89400 1.05938 1.20148 0.96356 0.88325 1.04068 1.20885 1.00014 0.97509 0.94460 1.22908 0.95950 0.90035 0.98579 1.67692 1.10058 1.12900 1.30836 1.23052 0.96866 1.00528 0.87470 1.21234 0.99212 0.95307 0.98018 1.20790 1.01702 1.01404 0.92753 1.21716 0.95527 0.95104 0.98559 1.21819 0.78506 1.02155 0.98184 1.22440 1.01410 0.97259 0.97208 1.20429 0.91113 0.91589 0.90073 0.93438 1.42799 1.17987 1.65952 1.11814 1.18995 0.92749 1.24875 0.97521 0.92064 1.25295 0.97469 1.01315 1.01057 1.69855 1.18487 1.43654 1.31652 0.85658 0.79414 0.76850 0.81322 1.20655 1.22895 1.18253 0.92185 0.91831 0.92943 0.93546 0.91865 0.89175 0.93430 0.87541 0.86912 0.90140 0.90582 0.81854 0.81200 0.89960 0.89993 0.90674 0.83503 0.92592 0.87342 0.90156 0.91773 0.80430 0.93643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 9.67 71.98 0.70 -2.68 16 2 C -0.11 -3.14 5.19 30.60 0.16 -2.98 16 3 C -0.09 -2.64 2.14 -10.71 -0.02 -2.66 16 4 H 0.09 2.26 8.14 -2.39 -0.02 2.25 16 5 C 0.12 3.46 5.02 86.36 0.43 3.90 16 6 N -0.61 -16.01 2.97 -818.08 -2.43 -18.44 16 7 C 0.51 12.91 7.70 87.66 0.67 13.58 16 8 O -0.58 -18.26 15.39 -3.02 -0.05 -18.30 16 9 C -0.13 -2.19 4.03 29.85 0.12 -2.07 16 10 C -0.05 -0.85 4.66 29.85 0.14 -0.71 16 11 C -0.13 -2.09 5.15 -19.77 -0.10 -2.19 16 12 C 0.08 1.48 10.86 84.69 0.92 2.40 16 13 N -0.51 -10.35 10.36 -195.84 -2.03 -12.38 16 14 C 0.08 1.26 10.86 84.67 0.92 2.18 16 15 C -0.14 -1.91 5.90 -19.77 -0.12 -2.02 16 16 C -0.11 -0.91 10.04 71.24 0.72 -0.20 16 17 C -0.08 -1.25 9.54 22.47 0.21 -1.04 16 18 C 0.12 2.98 6.11 86.51 0.53 3.51 16 19 C -0.14 -4.03 5.80 30.82 0.18 -3.85 16 20 C 0.18 5.90 2.53 45.02 0.11 6.01 16 21 H 0.05 1.72 8.08 -2.39 -0.02 1.70 16 22 N -0.74 -31.21 3.52 -322.82 -1.14 -32.34 16 23 C -0.21 -11.11 10.41 84.03 0.87 -10.24 16 24 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16 25 C -0.06 -3.41 5.50 84.86 0.47 -2.94 16 26 N -0.98 -61.48 13.97 21.65 0.30 -61.17 16 27 Si 0.94 44.40 27.74 68.60 1.90 46.30 16 28 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 29 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 30 H -0.26 -11.14 6.52 99.48 0.65 -10.49 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.05 1.21 6.70 -2.39 -0.02 1.20 16 34 H 0.05 1.54 7.70 -2.39 -0.02 1.52 16 35 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 36 H 0.09 2.63 5.72 -2.39 -0.01 2.62 16 37 H 0.05 1.54 6.65 -2.39 -0.02 1.53 16 38 H 0.11 1.61 7.93 -2.39 -0.02 1.59 16 39 H 0.11 1.61 7.70 -2.39 -0.02 1.59 16 40 H 0.08 1.43 8.05 -2.38 -0.02 1.41 16 41 H 0.08 1.39 8.05 -2.39 -0.02 1.37 16 42 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 43 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 44 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.08 0.51 8.09 -2.39 -0.02 0.49 16 46 H 0.07 0.57 8.10 -2.39 -0.02 0.55 16 47 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 48 H 0.06 1.74 7.73 -2.39 -0.02 1.72 16 49 H 0.11 2.06 5.93 -2.39 -0.01 2.04 16 50 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 51 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 52 H 0.36 15.19 3.81 -92.71 -0.35 14.83 16 53 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -69.81 413.57 3.96 -65.85 By element: Atomic # 1 Polarization: 32.00 SS G_CDS: 0.48 Total: 32.48 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: 6.91 Total: -2.00 kcal Atomic # 7 Polarization: -119.04 SS G_CDS: -5.29 Total: -124.33 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.05 Total: -18.30 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.90 Total: 46.30 kcal Total: -69.81 3.96 -65.85 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037882179.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.856 kcal (2) G-P(sol) polarization free energy of solvation -69.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds