Wall clock time and date at job start Wed Apr 1 2020 04:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47326 * 2 1 4 4 H 1.09005 * 109.52543 * 54.91881 * 3 2 1 5 5 C 1.53194 * 109.49794 * 294.84093 * 3 2 1 6 6 N 1.46923 * 108.77466 * 185.41413 * 5 3 2 7 7 C 1.34776 * 120.62883 * 233.62751 * 6 5 3 8 8 O 1.21550 * 120.00287 * 359.97438 * 7 6 5 9 9 C 1.47847 * 120.00343 * 179.97438 * 7 6 5 10 10 C 1.40024 * 120.55368 * 270.00218 * 9 7 6 11 11 C 1.50699 * 120.86032 * 0.02562 * 10 9 7 12 12 C 1.38356 * 118.28774 * 180.02562 * 10 9 7 13 13 C 1.38355 * 119.29968 * 359.97438 * 12 10 9 14 14 C 1.50703 * 119.45728 * 180.02562 * 13 12 10 15 15 N 1.31924 * 121.08179 * 359.97438 * 13 12 10 16 16 C 1.31689 * 121.87663 * 359.73975 * 15 13 12 17 17 C 1.50708 * 119.71442 * 180.27269 * 16 15 13 18 18 C 1.46921 * 118.74280 * 53.60951 * 6 5 3 19 19 C 1.53195 * 108.77116 * 306.38811 * 18 6 5 20 20 C 1.53041 * 109.31384 * 54.64022 * 19 18 6 21 21 H 1.08997 * 109.46138 * 58.63701 * 20 19 18 22 22 N 1.46500 * 109.45992 * 178.61567 * 20 19 18 23 23 C 1.36935 * 119.99795 * 274.99082 * 22 20 19 24 24 H 1.08006 * 119.99956 * 0.02562 * 23 22 20 25 25 C 1.38809 * 120.00104 * 180.02562 * 23 22 20 26 26 N 1.31615 * 120.00002 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00116 * 180.02562 * 25 23 22 28 28 H 1.48506 * 109.47297 * 359.97438 * 27 25 23 29 29 H 1.48503 * 109.47261 * 239.99934 * 27 25 23 30 30 H 1.48500 * 109.47454 * 119.99927 * 27 25 23 31 31 H 1.09006 * 109.47237 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46931 * 299.99678 * 1 2 3 33 33 H 1.08997 * 109.47200 * 60.00071 * 1 2 3 34 34 H 1.09003 * 109.46858 * 239.99882 * 2 1 3 35 35 H 1.09001 * 109.47168 * 120.00443 * 2 1 3 36 36 H 1.08996 * 109.59002 * 65.62271 * 5 3 2 37 37 H 1.09001 * 109.70311 * 305.26732 * 5 3 2 38 38 H 1.08999 * 109.47010 * 89.99556 * 11 10 9 39 39 H 1.08993 * 109.47626 * 210.00620 * 11 10 9 40 40 H 1.09007 * 109.46933 * 330.00424 * 11 10 9 41 41 H 1.07996 * 120.35210 * 180.02562 * 12 10 9 42 42 H 1.08998 * 109.46818 * 90.00241 * 14 13 12 43 43 H 1.09003 * 109.47068 * 210.00061 * 14 13 12 44 44 H 1.08999 * 109.47676 * 330.00449 * 14 13 12 45 45 H 1.09007 * 109.46809 * 270.26980 * 17 16 15 46 46 H 1.08996 * 109.47338 * 30.27087 * 17 16 15 47 47 H 1.08995 * 109.47323 * 150.27808 * 17 16 15 48 48 H 1.09003 * 109.58799 * 186.60368 * 18 6 5 49 49 H 1.08992 * 109.59085 * 66.17496 * 18 6 5 50 50 H 1.09000 * 109.50148 * 294.67997 * 19 18 6 51 51 H 1.09005 * 109.52171 * 174.60261 * 19 18 6 52 52 H 0.96997 * 120.00022 * 94.99556 * 22 20 19 53 53 H 0.97004 * 120.00335 * 0.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6048 1.9827 0.8407 5 6 1.6386 2.1267 -1.3105 6 7 2.2452 3.4643 -1.3507 7 6 1.4858 4.5564 -1.5672 8 8 0.2871 4.4403 -1.7320 9 6 2.1106 5.8959 -1.6044 10 6 2.2371 6.6550 -0.4346 11 6 1.7416 6.1268 0.8870 12 6 2.8288 7.9025 -0.5232 13 6 3.2727 8.3554 -1.7529 14 6 3.9183 9.7135 -1.8534 15 7 3.1411 7.6176 -2.8385 16 6 2.5900 6.4220 -2.8042 17 6 2.4698 5.6182 -4.0734 18 6 3.6953 3.5887 -1.1499 19 6 4.0737 2.8881 0.1588 20 6 3.5653 1.4449 0.1257 21 1 4.0007 0.9260 -0.7282 22 7 3.9542 0.7620 1.3621 23 6 5.1918 0.1850 1.4653 24 1 5.8813 0.2337 0.6354 25 6 5.5601 -0.4626 2.6365 26 7 4.7197 -0.5224 3.6477 27 14 7.2486 -1.2491 2.7776 28 1 7.9975 -1.0442 1.5117 29 1 7.0971 -2.7042 3.0326 30 1 7.9933 -0.6247 3.9004 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 0.5533 2.2161 -1.3585 37 1 1.9946 1.5385 -2.1563 38 1 2.5417 5.5758 1.3811 39 1 1.4307 6.9597 1.5177 40 1 0.8937 5.4628 0.7181 41 1 2.9437 8.5159 0.3582 42 1 4.9933 9.6168 -1.7020 43 1 3.7268 10.1346 -2.8404 44 1 3.5016 10.3713 -1.0907 45 1 1.5219 5.8475 -4.5602 46 1 3.2923 5.8705 -4.7425 47 1 2.5081 4.5553 -3.8352 48 1 3.9671 4.6427 -1.0919 49 1 4.2209 3.1189 -1.9811 50 1 3.6194 3.4147 0.9981 51 1 5.1578 2.8893 0.2724 52 1 3.3351 0.7185 2.1075 53 1 3.8428 -0.1144 3.5743 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037893666.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:13 Heat of formation + Delta-G solvation = -27.474784 kcal Electronic energy + Delta-G solvation = -31945.643098 eV Core-core repulsion = 28008.749495 eV Total energy + Delta-G solvation = -3936.893603 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.21513 -40.78338 -39.19135 -36.46877 -35.64109 -35.25892 -34.67101 -33.54331 -31.00525 -30.51245 -29.94105 -28.91796 -28.32397 -26.41585 -25.23473 -24.73438 -23.29144 -22.39687 -22.16166 -21.34951 -20.46290 -19.30337 -18.62721 -18.15159 -17.58305 -16.74623 -16.27483 -16.10872 -15.89128 -15.81327 -15.64137 -15.39885 -14.99452 -14.79074 -14.67294 -14.45434 -14.37441 -14.16178 -14.07402 -13.94488 -13.80811 -13.51135 -13.37625 -13.22291 -13.14820 -13.01560 -12.76416 -12.73723 -12.71589 -12.60311 -12.44434 -12.18498 -11.87062 -11.74903 -11.64355 -11.47938 -11.33857 -11.07229 -10.87838 -10.59251 -10.48520 -9.83622 -9.82752 -9.06760 -8.33560 -5.27407 -0.20693 0.09679 1.31520 1.59523 1.69972 1.80968 1.81281 2.52568 2.72540 3.08051 3.27447 3.43747 3.47009 3.55625 3.62254 3.66395 3.87538 3.91363 4.00908 4.11113 4.19116 4.24781 4.26507 4.32264 4.36114 4.44626 4.48562 4.50819 4.54008 4.56761 4.59846 4.64922 4.69325 4.70673 4.77505 4.80085 4.86753 4.91030 4.94898 5.03073 5.05244 5.09680 5.11429 5.17643 5.20112 5.25222 5.35867 5.42530 5.53958 5.61408 5.65269 6.18120 6.53974 6.85054 6.91249 7.13137 8.03443 8.16232 9.18161 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.011883 B = 0.003227 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.741503 B = 8675.507673 C = 9898.987438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.092 4.092 4 H 0.054 0.946 5 C 0.124 3.876 6 N -0.594 5.594 7 C 0.579 3.421 8 O -0.570 6.570 9 C -0.202 4.202 10 C -0.010 4.010 11 C -0.121 4.121 12 C -0.179 4.179 13 C 0.140 3.860 14 C -0.102 4.102 15 N -0.504 5.504 16 C 0.161 3.839 17 C -0.106 4.106 18 C 0.121 3.879 19 C -0.137 4.137 20 C 0.186 3.814 21 H 0.046 0.954 22 N -0.741 5.741 23 C -0.318 4.318 24 H 0.067 0.933 25 C -0.104 4.104 26 N -0.979 5.979 27 Si 1.127 2.873 28 H -0.271 1.271 29 H -0.295 1.295 30 H -0.295 1.295 31 H 0.061 0.939 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.044 0.956 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.102 0.898 40 H 0.052 0.948 41 H 0.170 0.830 42 H 0.093 0.907 43 H 0.078 0.922 44 H 0.099 0.901 45 H 0.085 0.915 46 H 0.096 0.904 47 H 0.071 0.929 48 H 0.083 0.917 49 H 0.086 0.914 50 H 0.047 0.953 51 H 0.063 0.937 52 H 0.357 0.643 53 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.065 17.532 -13.176 22.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.144 4.144 3 C -0.112 4.112 4 H 0.073 0.927 5 C 0.002 3.998 6 N -0.325 5.325 7 C 0.367 3.633 8 O -0.450 6.450 9 C -0.207 4.207 10 C -0.017 4.017 11 C -0.177 4.177 12 C -0.198 4.198 13 C 0.003 3.997 14 C -0.159 4.159 15 N -0.215 5.215 16 C 0.023 3.977 17 C -0.164 4.164 18 C -0.002 4.002 19 C -0.178 4.178 20 C 0.078 3.922 21 H 0.064 0.936 22 N -0.382 5.382 23 C -0.450 4.450 24 H 0.085 0.915 25 C -0.296 4.296 26 N -0.628 5.628 27 Si 0.953 3.047 28 H -0.196 1.196 29 H -0.223 1.223 30 H -0.222 1.222 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.121 0.879 40 H 0.071 0.929 41 H 0.187 0.813 42 H 0.111 0.889 43 H 0.097 0.903 44 H 0.118 0.882 45 H 0.104 0.896 46 H 0.115 0.885 47 H 0.090 0.910 48 H 0.102 0.898 49 H 0.105 0.895 50 H 0.066 0.934 51 H 0.082 0.918 52 H 0.189 0.811 53 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.206 16.926 -13.270 21.745 hybrid contribution -1.598 0.176 0.540 1.696 sum -4.804 17.102 -12.731 21.854 Atomic orbital electron populations 1.21783 0.94646 1.02050 1.01836 1.21344 0.96215 0.94967 1.01868 1.21634 0.95598 0.96588 0.97380 0.92749 1.21732 0.99577 0.81328 0.97185 1.48160 1.08737 1.06364 1.69208 1.18214 0.85675 0.84213 0.75169 1.90753 1.15680 1.86785 1.51814 1.20563 1.07317 0.96604 0.96215 1.20530 0.93040 0.93708 0.94472 1.20915 1.01162 1.02559 0.93090 1.22085 1.01380 0.96079 1.00242 1.22045 0.92588 0.97059 0.88024 1.20858 1.01159 0.89244 1.04649 1.67441 1.16542 1.05489 1.32046 1.21486 0.90929 0.91141 0.94163 1.20812 1.04431 0.97954 0.93162 1.21743 0.78976 1.01483 0.97958 1.22435 1.01161 0.97801 0.96428 1.20313 0.92374 0.90873 0.88649 0.93621 1.42572 1.15536 1.66123 1.13940 1.20361 0.93289 1.30231 1.01102 0.91509 1.26988 1.08456 1.01541 0.92574 1.70930 1.08520 1.49838 1.33472 0.82605 0.71160 0.75211 0.75699 1.19560 1.22262 1.22187 0.92008 0.93514 0.91604 0.91625 0.93746 0.89056 0.89563 0.90001 0.87949 0.92894 0.81255 0.88898 0.90335 0.88224 0.89639 0.88512 0.91032 0.89827 0.89546 0.93394 0.91807 0.81074 0.94578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 9.67 71.98 0.70 -3.10 16 2 C -0.11 -3.31 5.31 30.59 0.16 -3.15 16 3 C -0.09 -2.90 1.92 -10.72 -0.02 -2.92 16 4 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 5 C 0.12 3.36 5.33 86.36 0.46 3.82 16 6 N -0.59 -16.00 2.97 -822.34 -2.44 -18.45 16 7 C 0.58 16.89 4.23 86.79 0.37 17.26 16 8 O -0.57 -20.14 16.52 -3.87 -0.06 -20.20 16 9 C -0.20 -5.26 3.65 -19.99 -0.07 -5.34 16 10 C -0.01 -0.22 5.81 -19.40 -0.11 -0.33 16 11 C -0.12 -2.61 9.69 71.24 0.69 -1.92 16 12 C -0.18 -3.24 9.43 22.33 0.21 -3.03 16 13 C 0.14 2.66 6.78 42.57 0.29 2.95 16 14 C -0.10 -1.14 10.16 71.24 0.72 -0.42 16 15 N -0.50 -11.75 10.17 -171.05 -1.74 -13.49 16 16 C 0.16 3.93 6.82 42.89 0.29 4.22 16 17 C -0.11 -2.17 9.79 71.24 0.70 -1.47 16 18 C 0.12 3.11 6.34 86.36 0.55 3.65 16 19 C -0.14 -4.46 5.66 30.67 0.17 -4.28 16 20 C 0.19 6.83 2.19 45.02 0.10 6.93 16 21 H 0.05 1.72 8.08 -2.39 -0.02 1.70 16 22 N -0.74 -35.11 4.33 -322.81 -1.40 -36.50 16 23 C -0.32 -16.99 9.93 84.03 0.83 -16.16 16 24 H 0.07 3.49 7.83 -2.91 -0.02 3.46 16 25 C -0.10 -5.88 5.50 84.86 0.47 -5.42 16 26 N -0.98 -60.17 13.70 21.65 0.30 -59.87 16 27 Si 1.13 51.14 29.92 68.60 2.05 53.20 16 28 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 29 H -0.30 -13.40 7.11 99.48 0.71 -12.69 16 30 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 31 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 1.53 6.70 -2.39 -0.02 1.51 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.04 1.71 7.22 -2.39 -0.02 1.69 16 36 H 0.09 2.57 5.73 -2.39 -0.01 2.56 16 37 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.10 1.65 8.10 -2.39 -0.02 1.63 16 40 H 0.05 1.37 7.19 -2.38 -0.02 1.36 16 41 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 42 H 0.09 0.86 8.14 -2.39 -0.02 0.85 16 43 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.10 0.66 8.07 -2.39 -0.02 0.64 16 45 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 46 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.07 1.48 7.07 -2.39 -0.02 1.46 16 48 H 0.08 2.04 6.23 -2.39 -0.01 2.03 16 49 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 50 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 51 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 52 H 0.36 18.20 6.35 -92.71 -0.59 17.61 16 53 H 0.24 14.96 6.78 -92.70 -0.63 14.34 16 Total: -1.00 -70.22 416.38 3.66 -66.56 By element: Atomic # 1 Polarization: 36.99 SS G_CDS: 0.45 Total: 37.45 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: 6.50 Total: -8.70 kcal Atomic # 7 Polarization: -123.02 SS G_CDS: -5.28 Total: -128.30 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.06 Total: -20.20 kcal Atomic # 14 Polarization: 51.14 SS G_CDS: 2.05 Total: 53.20 kcal Total: -70.22 3.66 -66.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037893666.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.088 kcal (2) G-P(sol) polarization free energy of solvation -70.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds