Wall clock time and date at job start Wed Apr 1 2020 04:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47083 * 2 1 4 4 H 1.08996 * 109.50288 * 55.05828 * 3 2 1 5 5 C 1.53194 * 109.49470 * 294.99859 * 3 2 1 6 6 N 1.46926 * 108.77524 * 185.41229 * 5 3 2 7 7 C 1.34773 * 120.63384 * 233.58299 * 6 5 3 8 8 O 1.21599 * 119.99733 * 5.85254 * 7 6 5 9 9 C 1.47523 * 120.00346 * 185.84773 * 7 6 5 10 10 C 1.39794 * 120.06724 * 41.85470 * 9 7 6 11 11 C 1.37607 * 119.92768 * 180.23061 * 10 9 7 12 12 C 1.39219 * 120.07215 * 359.52606 * 11 10 9 13 13 N 1.39049 * 119.93302 * 180.27617 * 12 11 10 14 14 C 1.46499 * 119.99943 * 359.97438 * 13 12 11 15 15 C 1.46502 * 119.99648 * 180.02562 * 13 12 11 16 16 C 1.39225 * 120.13479 * 0.24667 * 12 11 10 17 17 C 1.37603 * 120.06918 * 359.97438 * 16 12 11 18 18 C 1.46928 * 118.73706 * 53.86151 * 6 5 3 19 19 C 1.53630 * 108.54213 * 306.09256 * 18 6 5 20 20 C 1.53033 * 109.23834 * 54.85808 * 19 18 6 21 21 H 1.08999 * 109.45758 * 178.49144 * 20 19 18 22 22 N 1.46501 * 109.45411 * 58.52572 * 20 19 18 23 23 C 1.36938 * 119.99877 * 84.93281 * 22 20 19 24 24 H 1.07997 * 120.00169 * 0.02562 * 23 22 20 25 25 C 1.38817 * 119.99722 * 180.02562 * 23 22 20 26 26 N 1.31622 * 119.99755 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 119.99767 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47052 * 60.00191 * 27 25 23 29 29 H 1.48503 * 109.46984 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.47292 * 300.00060 * 27 25 23 31 31 H 1.09003 * 109.47380 * 60.00538 * 1 2 3 32 32 H 1.09011 * 109.47155 * 179.97438 * 1 2 3 33 33 H 1.08990 * 109.47450 * 299.99961 * 1 2 3 34 34 H 1.09000 * 109.46818 * 239.99699 * 2 1 3 35 35 H 1.09005 * 109.46822 * 119.99966 * 2 1 3 36 36 H 1.08998 * 109.58782 * 65.62638 * 5 3 2 37 37 H 1.08999 * 109.58518 * 305.19895 * 5 3 2 38 38 H 1.07993 * 120.03616 * 0.02562 * 10 9 7 39 39 H 1.08003 * 119.96568 * 179.79453 * 11 10 9 40 40 H 1.08999 * 109.47231 * 90.00407 * 14 13 12 41 41 H 1.09002 * 109.47227 * 210.00416 * 14 13 12 42 42 H 1.09000 * 109.47088 * 330.00161 * 14 13 12 43 43 H 1.08996 * 109.47482 * 59.99456 * 15 13 12 44 44 H 1.09007 * 109.46773 * 179.97438 * 15 13 12 45 45 H 1.09004 * 109.46882 * 299.99083 * 15 13 12 46 46 H 1.08003 * 119.96282 * 180.02562 * 16 12 11 47 47 H 1.08002 * 120.03770 * 179.97438 * 17 16 12 48 48 H 1.09002 * 109.58903 * 65.92547 * 18 6 5 49 49 H 1.08998 * 109.58521 * 186.35332 * 18 6 5 50 50 H 1.08993 * 109.63280 * 294.86664 * 19 18 6 51 51 H 1.08995 * 109.45372 * 174.74016 * 19 18 6 52 52 H 0.97000 * 119.99791 * 264.94041 * 22 20 19 53 53 H 0.97003 * 119.99113 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9817 0.8422 5 6 1.6350 2.1279 -1.3088 6 7 2.2414 3.4655 -1.3494 7 6 1.4816 4.5578 -1.5639 8 8 0.2712 4.4549 -1.6200 9 6 2.1181 5.8781 -1.7306 10 6 3.2790 6.0040 -2.4993 11 6 3.8730 7.2362 -2.6490 12 6 3.3137 8.3584 -2.0440 13 7 3.9132 9.6030 -2.2019 14 6 5.1324 9.7324 -3.0037 15 6 3.3261 10.7848 -1.5655 16 6 2.1550 8.2371 -1.2818 17 6 1.5587 7.0069 -1.1246 18 6 3.6929 3.5893 -1.1579 19 6 4.0740 2.8880 0.1548 20 6 3.5655 1.4450 0.1216 21 1 3.8573 0.9360 1.0403 22 7 4.1480 0.7487 -1.0282 23 6 5.3861 0.1730 -0.9247 24 1 5.9330 0.2318 0.0046 25 6 5.9382 -0.4863 -2.0145 26 7 5.2718 -0.5575 -3.1473 27 14 7.6269 -1.2723 -1.8731 28 1 7.6054 -2.3025 -0.8038 29 1 7.9869 -1.9078 -3.1661 30 1 8.6310 -0.2311 -1.5373 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0278 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 0.5496 2.2172 -1.3539 37 1 1.9908 1.5396 -2.1547 38 1 3.7109 5.1346 -2.9724 39 1 4.7717 7.3335 -3.2400 40 1 4.8654 9.9324 -4.0414 41 1 5.7350 10.5550 -2.6186 42 1 5.7041 8.8060 -2.9477 43 1 3.2994 10.6404 -0.4855 44 1 3.9301 11.6614 -1.7998 45 1 2.3121 10.9318 -1.9376 46 1 1.7232 9.1096 -0.8141 47 1 0.6601 6.9133 -0.5329 48 1 4.2130 3.1177 -1.9917 49 1 3.9657 4.6432 -1.1033 50 1 3.6218 3.4138 0.9956 51 1 5.1583 2.8892 0.2655 52 1 3.6566 0.6956 -1.8629 53 1 5.6579 -1.0179 -3.9088 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037965374.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:07 Heat of formation + Delta-G solvation = -2.047285 kcal Electronic energy + Delta-G solvation = -31367.392008 eV Core-core repulsion = 27431.601024 eV Total energy + Delta-G solvation = -3935.790984 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.66151 -40.31714 -39.08093 -37.03233 -35.84434 -35.31224 -33.38342 -32.23372 -31.45292 -30.96207 -29.73276 -28.99441 -27.06360 -25.77862 -25.20783 -25.09756 -23.23675 -22.60107 -22.02379 -20.88949 -19.84920 -19.24164 -18.42144 -17.95805 -17.25654 -16.83343 -16.48639 -16.07746 -16.00868 -15.87422 -15.64672 -15.51988 -15.15867 -14.78312 -14.75326 -14.57846 -14.45988 -14.14665 -14.10001 -13.68978 -13.47895 -13.44211 -13.34180 -13.04627 -12.96314 -12.84807 -12.80199 -12.78166 -12.63298 -12.32392 -12.15934 -12.09175 -11.85041 -11.73972 -11.56074 -11.43292 -11.11018 -10.95296 -10.85113 -10.62271 -9.92434 -9.57693 -8.89439 -8.26141 -7.85694 -5.11882 0.18208 0.47227 1.51151 1.52401 1.58194 1.78937 2.07773 2.20096 2.61942 2.88683 3.47505 3.58500 3.81700 3.87241 3.89447 3.98133 4.06208 4.10900 4.18741 4.29542 4.35564 4.39256 4.41471 4.46087 4.48638 4.52972 4.59493 4.63411 4.69493 4.71349 4.79567 4.85720 4.91045 4.91939 4.92872 5.01484 5.06560 5.07181 5.17313 5.21184 5.23831 5.24973 5.31160 5.35060 5.42415 5.50853 5.55908 5.62770 5.69585 5.76503 6.29051 6.35625 6.44464 6.49299 7.17071 7.43271 8.19160 8.43779 9.37365 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.010510 B = 0.003187 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.507107 B = 8783.242840 C =10810.033433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.091 4.091 4 H 0.082 0.918 5 C 0.125 3.875 6 N -0.597 5.597 7 C 0.561 3.439 8 O -0.590 6.590 9 C -0.210 4.210 10 C -0.039 4.039 11 C -0.208 4.208 12 C 0.235 3.765 13 N -0.633 5.633 14 C 0.082 3.918 15 C 0.086 3.914 16 C -0.204 4.204 17 C -0.023 4.023 18 C 0.119 3.881 19 C -0.142 4.142 20 C 0.174 3.826 21 H 0.047 0.953 22 N -0.723 5.723 23 C -0.226 4.226 24 H 0.074 0.926 25 C -0.072 4.072 26 N -0.969 5.969 27 Si 0.963 3.037 28 H -0.283 1.283 29 H -0.302 1.302 30 H -0.279 1.279 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.045 0.955 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.049 0.951 38 H 0.123 0.877 39 H 0.144 0.856 40 H 0.055 0.945 41 H 0.089 0.911 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.095 0.905 45 H 0.059 0.941 46 H 0.148 0.852 47 H 0.127 0.873 48 H 0.055 0.945 49 H 0.100 0.900 50 H 0.070 0.930 51 H 0.067 0.933 52 H 0.373 0.627 53 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.401 22.675 5.167 23.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.111 4.111 4 H 0.100 0.900 5 C 0.003 3.997 6 N -0.327 5.327 7 C 0.352 3.648 8 O -0.472 6.472 9 C -0.216 4.216 10 C -0.059 4.059 11 C -0.230 4.230 12 C 0.129 3.871 13 N -0.342 5.342 14 C -0.060 4.060 15 C -0.056 4.056 16 C -0.226 4.226 17 C -0.043 4.043 18 C -0.003 4.003 19 C -0.182 4.182 20 C 0.065 3.935 21 H 0.065 0.935 22 N -0.364 5.364 23 C -0.358 4.358 24 H 0.092 0.908 25 C -0.264 4.264 26 N -0.620 5.620 27 Si 0.794 3.206 28 H -0.210 1.210 29 H -0.229 1.229 30 H -0.205 1.205 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.068 0.932 38 H 0.141 0.859 39 H 0.162 0.838 40 H 0.074 0.926 41 H 0.108 0.892 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.114 0.886 45 H 0.077 0.923 46 H 0.165 0.835 47 H 0.145 0.855 48 H 0.073 0.927 49 H 0.118 0.882 50 H 0.088 0.912 51 H 0.086 0.914 52 H 0.207 0.793 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.739 22.767 5.189 23.649 hybrid contribution 0.854 -1.091 -0.693 1.549 sum -2.885 21.676 4.497 22.325 Atomic orbital electron populations 1.21785 0.94788 1.01928 1.01821 1.21337 0.96045 0.95083 1.01814 1.21644 0.95868 0.96470 0.97116 0.90014 1.21527 0.98577 0.81878 0.97767 1.48054 1.08871 1.06175 1.69598 1.18733 0.85991 0.84835 0.75246 1.90690 1.15385 1.86907 1.54237 1.19488 1.00447 0.92752 1.08871 1.21132 0.92218 0.97891 0.94646 1.20764 1.03780 0.91072 1.07407 1.18108 0.91259 0.85938 0.91797 1.46578 1.28256 1.04835 1.54511 1.21913 0.85542 1.03556 0.95016 1.21856 0.99317 0.86734 0.97705 1.20707 0.97824 0.98085 1.05985 1.20929 0.97348 0.90797 0.95182 1.21959 0.78533 1.01534 0.98307 1.22479 1.01312 0.97825 0.96631 1.20419 0.91007 0.91316 0.90755 0.93456 1.42564 1.18227 1.64273 1.11349 1.19523 0.94263 1.25290 0.96745 0.90773 1.25374 1.01774 1.03222 0.96075 1.69805 1.39568 1.49830 1.02782 0.85358 0.81000 0.78412 0.75842 1.20976 1.22900 1.20517 0.93311 0.92043 0.91898 0.93612 0.91850 0.89778 0.93231 0.85885 0.83832 0.92649 0.89250 0.91139 0.92110 0.88599 0.92282 0.83453 0.85506 0.92654 0.88194 0.91162 0.91436 0.79308 0.94413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 9.67 71.98 0.70 -3.32 16 2 C -0.10 -3.46 5.19 30.59 0.16 -3.30 16 3 C -0.09 -3.07 2.14 -10.72 -0.02 -3.09 16 4 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 5 C 0.13 4.55 5.03 86.36 0.43 4.98 16 6 N -0.60 -20.90 2.97 -821.81 -2.44 -23.34 16 7 C 0.56 20.09 7.29 86.69 0.63 20.72 16 8 O -0.59 -24.49 16.36 -4.03 -0.07 -24.55 16 9 C -0.21 -6.27 5.08 -20.08 -0.10 -6.37 16 10 C -0.04 -1.05 7.37 22.50 0.17 -0.89 16 11 C -0.21 -4.55 9.18 22.36 0.21 -4.34 16 12 C 0.23 4.66 6.55 38.47 0.25 4.91 16 13 N -0.63 -9.00 3.39 -747.28 -2.53 -11.53 16 14 C 0.08 0.82 10.14 127.77 1.30 2.12 16 15 C 0.09 0.75 9.39 127.77 1.20 1.95 16 16 C -0.20 -4.15 9.28 22.36 0.21 -3.94 16 17 C -0.02 -0.59 9.64 22.50 0.22 -0.37 16 18 C 0.12 3.97 4.70 86.51 0.41 4.38 16 19 C -0.14 -4.74 5.79 30.82 0.18 -4.56 16 20 C 0.17 6.56 2.53 45.02 0.11 6.67 16 21 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 22 N -0.72 -34.00 3.71 -322.83 -1.20 -35.20 16 23 C -0.23 -11.86 9.93 84.03 0.83 -11.03 16 24 H 0.07 3.75 7.83 -2.91 -0.02 3.72 16 25 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 26 N -0.97 -57.83 13.06 21.65 0.28 -57.55 16 27 Si 0.96 45.24 29.55 68.60 2.03 47.27 16 28 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 29 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 30 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 31 H 0.05 1.39 6.70 -2.39 -0.02 1.37 16 32 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.05 1.80 7.69 -2.39 -0.02 1.78 16 35 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 36 H 0.08 3.09 5.71 -2.39 -0.01 3.08 16 37 H 0.05 2.04 6.64 -2.39 -0.02 2.02 16 38 H 0.12 3.44 6.73 -2.91 -0.02 3.42 16 39 H 0.14 2.57 6.11 -2.91 -0.02 2.56 16 40 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.09 0.52 7.92 -2.39 -0.02 0.50 16 42 H 0.07 0.76 6.17 -2.39 -0.01 0.74 16 43 H 0.06 0.50 7.93 -2.39 -0.02 0.48 16 44 H 0.10 0.42 7.79 -2.38 -0.02 0.40 16 45 H 0.06 0.51 7.93 -2.39 -0.02 0.49 16 46 H 0.15 2.22 6.70 -2.91 -0.02 2.20 16 47 H 0.13 3.16 8.06 -2.91 -0.02 3.14 16 48 H 0.06 2.17 7.73 -2.39 -0.02 2.16 16 49 H 0.10 2.94 4.81 -2.39 -0.01 2.93 16 50 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 51 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 52 H 0.37 19.25 5.94 -92.71 -0.55 18.70 16 53 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -67.92 406.54 3.77 -64.15 By element: Atomic # 1 Polarization: 39.41 SS G_CDS: 0.36 Total: 39.77 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 7.34 Total: 0.98 kcal Atomic # 7 Polarization: -121.73 SS G_CDS: -5.89 Total: -127.61 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.07 Total: -24.55 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -67.92 3.77 -64.15 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037965374.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.106 kcal (2) G-P(sol) polarization free energy of solvation -67.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds