Wall clock time and date at job start Wed Apr 1 2020 04:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47599 * 2 1 4 4 H 1.09003 * 109.52012 * 305.08140 * 3 2 1 5 5 C 1.53193 * 109.49940 * 65.15995 * 3 2 1 6 6 N 1.46924 * 108.77963 * 174.58844 * 5 3 2 7 7 C 1.34773 * 120.63101 * 126.36852 * 6 5 3 8 8 O 1.21594 * 120.00308 * 354.18624 * 7 6 5 9 9 C 1.47523 * 119.99935 * 174.18737 * 7 6 5 10 10 C 1.39790 * 120.07143 * 318.45572 * 9 7 6 11 11 C 1.37605 * 119.93572 * 179.72110 * 10 9 7 12 12 C 1.39223 * 120.06523 * 0.55235 * 11 10 9 13 13 N 1.39043 * 119.92912 * 179.74718 * 12 11 10 14 14 C 1.46509 * 119.99700 * 179.97438 * 13 12 11 15 15 C 1.46490 * 120.00325 * 359.97071 * 13 12 11 16 16 C 1.39225 * 120.13684 * 359.71900 * 12 11 10 17 17 C 1.37605 * 120.06827 * 0.02562 * 16 12 11 18 18 C 1.46928 * 118.73900 * 306.39785 * 6 5 3 19 19 C 1.53190 * 108.77720 * 53.60139 * 18 6 5 20 20 C 1.53038 * 109.50067 * 185.00374 * 3 2 1 21 21 H 1.08995 * 109.45041 * 58.66649 * 20 3 2 22 22 N 1.46504 * 109.45596 * 298.69950 * 20 3 2 23 23 C 1.36935 * 119.99795 * 154.93271 * 22 20 3 24 24 H 1.08001 * 120.00294 * 0.02562 * 23 22 20 25 25 C 1.38815 * 120.00131 * 179.97438 * 23 22 20 26 26 N 1.31616 * 119.99689 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 120.00303 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.47115 * 60.00034 * 27 25 23 29 29 H 1.48500 * 109.47118 * 300.00337 * 27 25 23 30 30 H 1.48494 * 109.47352 * 179.97438 * 27 25 23 31 31 H 1.09000 * 109.47499 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46932 * 300.00577 * 1 2 3 33 33 H 1.09001 * 109.46821 * 59.99761 * 1 2 3 34 34 H 1.09003 * 109.46932 * 239.99423 * 2 1 3 35 35 H 1.08999 * 109.47261 * 119.99946 * 2 1 3 36 36 H 1.08996 * 109.58311 * 54.80231 * 5 3 2 37 37 H 1.09006 * 109.70391 * 294.44868 * 5 3 2 38 38 H 1.08005 * 120.03179 * 359.97324 * 10 9 7 39 39 H 1.07997 * 119.96772 * 180.29592 * 11 10 9 40 40 H 1.09006 * 109.47004 * 89.99757 * 14 13 12 41 41 H 1.08994 * 109.47041 * 209.99611 * 14 13 12 42 42 H 1.08997 * 109.46923 * 330.00088 * 14 13 12 43 43 H 1.09003 * 109.47127 * 90.00408 * 15 13 12 44 44 H 1.09005 * 109.47579 * 210.00178 * 15 13 12 45 45 H 1.09000 * 109.47726 * 330.00959 * 15 13 12 46 46 H 1.07999 * 119.96151 * 180.02562 * 16 12 11 47 47 H 1.07998 * 120.03534 * 180.02562 * 17 16 12 48 48 H 1.09005 * 109.58273 * 293.81587 * 18 6 5 49 49 H 1.08990 * 109.58896 * 173.39280 * 18 6 5 50 50 H 1.09000 * 109.49883 * 185.41526 * 19 18 6 51 51 H 1.09000 * 109.49798 * 65.32205 * 19 18 6 52 52 H 0.97001 * 120.00452 * 334.93508 * 22 20 3 53 53 H 0.97001 * 120.00301 * 0.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6048 1.9827 -0.8407 5 6 1.6387 2.1268 1.3105 6 7 2.2453 3.4643 1.3507 7 6 1.4859 4.5565 1.5672 8 8 0.2757 4.4537 1.6262 9 6 2.1228 5.8768 1.7327 10 6 3.2891 6.0015 2.4933 11 6 3.8841 7.2334 2.6411 12 6 3.3194 8.3569 2.0435 13 7 3.9201 9.6012 2.1991 14 6 3.3274 10.7844 1.5704 15 6 5.1455 9.7291 2.9915 16 6 2.1548 8.2370 1.2901 17 6 1.5580 7.0069 1.1343 18 6 3.6954 3.5887 1.1498 19 6 4.0738 2.8880 -0.1589 20 6 3.5653 1.4449 -0.1258 21 1 3.8544 0.9368 -1.0457 22 7 4.1507 0.7474 1.0218 23 6 5.3879 0.1704 0.9140 24 1 5.9323 0.2299 -0.0169 25 6 5.9429 -0.4901 2.0015 26 7 5.2798 -0.5621 3.1361 27 14 7.6303 -1.2777 1.8543 28 1 8.6344 -0.2373 1.5158 29 1 7.6043 -2.3072 0.7843 30 1 7.9939 -1.9142 3.1457 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.9966 1.5377 2.1548 37 1 0.5534 2.2160 1.3611 38 1 3.7250 5.1310 2.9611 39 1 4.7878 7.3295 3.2246 40 1 2.6175 11.2441 2.2581 41 1 4.1136 11.4994 1.3282 42 1 2.8100 10.4900 0.6574 43 1 6.0123 9.5946 2.3445 44 1 5.1822 10.7188 3.4469 45 1 5.1540 8.9691 3.7728 46 1 1.7194 9.1104 0.8274 47 1 0.6548 6.9144 0.5494 48 1 4.2211 3.1189 1.9811 49 1 3.9672 4.6426 1.0918 50 1 5.1579 2.8892 -0.2720 51 1 3.6194 3.4147 -0.9981 52 1 3.6620 0.6942 1.8580 53 1 4.4031 -0.1541 3.2123 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037965381.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:17 Heat of formation + Delta-G solvation = -0.708293 kcal Electronic energy + Delta-G solvation = -31427.471028 eV Core-core repulsion = 27491.738107 eV Total energy + Delta-G solvation = -3935.732921 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.74585 -40.39257 -39.18814 -37.06732 -36.08828 -35.48740 -33.47514 -32.29311 -31.49524 -30.86160 -29.71172 -29.02796 -27.06235 -25.69073 -25.32069 -25.17958 -23.27758 -22.69041 -22.12456 -20.98033 -20.09063 -19.25775 -18.54544 -18.02921 -17.32382 -16.98819 -16.66918 -16.21832 -16.02955 -15.84735 -15.72443 -15.52152 -15.27644 -14.91779 -14.84099 -14.66723 -14.52964 -14.31853 -14.17569 -13.68546 -13.56907 -13.45479 -13.31332 -13.19394 -12.98747 -12.89317 -12.88574 -12.67004 -12.55462 -12.22186 -12.17941 -11.90051 -11.77030 -11.66791 -11.62941 -11.43364 -11.05808 -11.01981 -10.87278 -10.66377 -9.96629 -9.67279 -9.01053 -8.28663 -8.28286 -5.21760 0.13897 0.43577 1.61210 1.70205 1.72553 1.86100 1.99557 2.16999 2.76041 2.84800 3.47962 3.50798 3.71271 3.76689 3.80968 3.91857 3.93953 3.98347 4.17880 4.21831 4.25306 4.33334 4.37045 4.37765 4.39453 4.49630 4.51043 4.53729 4.59868 4.65693 4.75392 4.79577 4.82236 4.88853 4.90811 4.91851 4.97511 5.05063 5.07947 5.12631 5.15452 5.18734 5.22070 5.29739 5.33566 5.42330 5.49859 5.61003 5.70461 5.72125 6.25715 6.39530 6.43179 6.57933 7.10085 7.17808 8.08928 8.21906 9.22538 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.010551 B = 0.003193 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.068768 B = 8767.774613 C =10791.624307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.104 4.104 3 C -0.092 4.092 4 H 0.083 0.917 5 C 0.125 3.875 6 N -0.598 5.598 7 C 0.562 3.438 8 O -0.588 6.588 9 C -0.213 4.213 10 C -0.039 4.039 11 C -0.209 4.209 12 C 0.237 3.763 13 N -0.633 5.633 14 C 0.083 3.917 15 C 0.082 3.918 16 C -0.206 4.206 17 C -0.022 4.022 18 C 0.121 3.879 19 C -0.142 4.142 20 C 0.180 3.820 21 H 0.044 0.956 22 N -0.735 5.735 23 C -0.315 4.315 24 H 0.065 0.935 25 C -0.104 4.104 26 N -0.978 5.978 27 Si 1.122 2.878 28 H -0.278 1.278 29 H -0.282 1.282 30 H -0.299 1.299 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.042 0.958 36 H 0.046 0.954 37 H 0.087 0.913 38 H 0.122 0.878 39 H 0.144 0.856 40 H 0.057 0.943 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.057 0.943 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.151 0.849 47 H 0.128 0.872 48 H 0.051 0.949 49 H 0.102 0.898 50 H 0.065 0.935 51 H 0.071 0.929 52 H 0.359 0.641 53 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.428 22.871 -5.591 23.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.142 4.142 3 C -0.112 4.112 4 H 0.102 0.898 5 C 0.003 3.997 6 N -0.329 5.329 7 C 0.353 3.647 8 O -0.470 6.470 9 C -0.218 4.218 10 C -0.059 4.059 11 C -0.231 4.231 12 C 0.131 3.869 13 N -0.341 5.341 14 C -0.059 4.059 15 C -0.060 4.060 16 C -0.228 4.228 17 C -0.041 4.041 18 C -0.002 4.002 19 C -0.182 4.182 20 C 0.071 3.929 21 H 0.062 0.938 22 N -0.377 5.377 23 C -0.447 4.447 24 H 0.083 0.917 25 C -0.295 4.295 26 N -0.627 5.627 27 Si 0.949 3.051 28 H -0.204 1.204 29 H -0.209 1.209 30 H -0.225 1.225 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.105 0.895 38 H 0.140 0.860 39 H 0.162 0.838 40 H 0.076 0.924 41 H 0.105 0.895 42 H 0.093 0.907 43 H 0.075 0.925 44 H 0.106 0.894 45 H 0.088 0.912 46 H 0.169 0.831 47 H 0.146 0.854 48 H 0.069 0.931 49 H 0.120 0.880 50 H 0.084 0.916 51 H 0.090 0.910 52 H 0.193 0.807 53 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.640 22.174 -4.950 22.872 hybrid contribution -1.236 0.269 -0.230 1.286 sum -3.876 22.443 -5.180 23.357 Atomic orbital electron populations 1.21783 0.94501 1.02057 1.01951 1.21328 0.96280 0.94982 1.01607 1.21664 0.95731 0.96544 0.97280 0.89843 1.21513 0.98790 0.81933 0.97487 1.48045 1.08874 1.06190 1.69742 1.18742 0.85983 0.84800 0.75156 1.90692 1.15332 1.86864 1.54101 1.19475 1.00313 0.92703 1.09294 1.21121 0.92204 0.97887 0.94671 1.20761 1.04017 0.91053 1.07296 1.18125 0.91220 0.85979 0.91610 1.46579 1.27750 1.04801 1.54979 1.21899 0.99494 0.86465 0.98073 1.21880 0.85182 1.03687 0.95269 1.20772 0.97837 0.98207 1.06010 1.20936 0.97378 0.90751 0.95063 1.21838 0.78641 1.01637 0.98039 1.22393 1.01265 0.97758 0.96827 1.20345 0.90949 0.91204 0.90406 0.93756 1.42563 1.18679 1.65412 1.11094 1.20302 0.95466 1.29749 0.99144 0.91692 1.26925 1.08446 1.01560 0.92585 1.70996 1.14592 1.49884 1.27246 0.82668 0.71673 0.75783 0.74980 1.20444 1.20900 1.22537 0.91934 0.93189 0.91778 0.91946 0.93944 0.93534 0.89501 0.86031 0.83838 0.92413 0.89491 0.90682 0.92472 0.89363 0.91167 0.83108 0.85431 0.93060 0.88007 0.91604 0.91040 0.80741 0.94812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 9.68 71.98 0.70 -3.29 16 2 C -0.10 -3.44 5.19 30.59 0.16 -3.28 16 3 C -0.09 -3.13 2.14 -10.72 -0.02 -3.15 16 4 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 5 C 0.13 4.52 5.04 86.36 0.44 4.96 16 6 N -0.60 -20.85 2.97 -822.68 -2.45 -23.29 16 7 C 0.56 19.98 7.29 86.69 0.63 20.61 16 8 O -0.59 -24.17 16.36 -4.01 -0.07 -24.24 16 9 C -0.21 -6.29 5.08 -20.08 -0.10 -6.40 16 10 C -0.04 -1.05 7.38 22.50 0.17 -0.88 16 11 C -0.21 -4.55 9.18 22.36 0.21 -4.35 16 12 C 0.24 4.65 6.55 38.47 0.25 4.90 16 13 N -0.63 -8.92 3.39 -747.28 -2.53 -11.45 16 14 C 0.08 0.71 10.18 127.77 1.30 2.01 16 15 C 0.08 0.83 10.17 127.77 1.30 2.13 16 16 C -0.21 -4.11 9.18 22.36 0.21 -3.90 16 17 C -0.02 -0.55 9.64 22.50 0.22 -0.33 16 18 C 0.12 4.06 4.66 86.36 0.40 4.46 16 19 C -0.14 -4.84 5.78 30.67 0.18 -4.66 16 20 C 0.18 6.91 2.53 45.02 0.11 7.02 16 21 H 0.04 1.77 8.08 -2.39 -0.02 1.75 16 22 N -0.73 -34.86 3.72 -322.81 -1.20 -36.06 16 23 C -0.31 -16.87 9.93 84.03 0.83 -16.03 16 24 H 0.07 3.41 7.83 -2.91 -0.02 3.38 16 25 C -0.10 -5.88 5.50 84.86 0.47 -5.41 16 26 N -0.98 -60.35 13.70 21.65 0.30 -60.05 16 27 Si 1.12 51.34 29.92 68.60 2.05 53.40 16 28 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 29 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 30 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 31 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.05 1.40 6.70 -2.39 -0.02 1.39 16 33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.04 1.66 7.70 -2.39 -0.02 1.64 16 36 H 0.05 1.87 6.64 -2.39 -0.02 1.86 16 37 H 0.09 3.15 5.72 -2.38 -0.01 3.14 16 38 H 0.12 3.40 6.71 -2.91 -0.02 3.38 16 39 H 0.14 2.57 6.11 -2.91 -0.02 2.56 16 40 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 41 H 0.09 0.44 8.07 -2.39 -0.02 0.42 16 42 H 0.07 0.61 6.17 -2.39 -0.01 0.59 16 43 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.09 0.54 8.07 -2.38 -0.02 0.52 16 45 H 0.07 0.76 6.17 -2.39 -0.01 0.74 16 46 H 0.15 2.17 6.11 -2.91 -0.02 2.15 16 47 H 0.13 3.13 8.06 -2.91 -0.02 3.11 16 48 H 0.05 2.02 7.72 -2.38 -0.02 2.00 16 49 H 0.10 3.01 4.81 -2.39 -0.01 3.00 16 50 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 51 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 52 H 0.36 18.25 4.78 -92.71 -0.44 17.81 16 53 H 0.24 14.94 6.77 -92.71 -0.63 14.32 16 Total: -1.00 -70.58 403.83 4.15 -66.43 By element: Atomic # 1 Polarization: 40.25 SS G_CDS: 0.61 Total: 40.86 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 7.44 Total: -5.59 kcal Atomic # 7 Polarization: -124.97 SS G_CDS: -5.88 Total: -130.86 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.07 Total: -24.24 kcal Atomic # 14 Polarization: 51.34 SS G_CDS: 2.05 Total: 53.40 kcal Total: -70.58 4.15 -66.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037965381.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.722 kcal (2) G-P(sol) polarization free energy of solvation -70.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds