Wall clock time and date at job start Wed Apr 1 2020 04:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46548 * 2 1 4 4 H 1.08994 * 109.50284 * 304.99671 * 3 2 1 5 5 C 1.53189 * 109.50175 * 65.07030 * 3 2 1 6 6 N 1.46925 * 108.77886 * 174.58512 * 5 3 2 7 7 C 1.34771 * 120.63179 * 126.41232 * 6 5 3 8 8 O 1.21598 * 120.00452 * 354.55363 * 7 6 5 9 9 C 1.47521 * 120.00003 * 174.56242 * 7 6 5 10 10 C 1.39794 * 120.06914 * 326.64111 * 9 7 6 11 11 C 1.37611 * 119.93226 * 179.72076 * 10 9 7 12 12 C 1.39215 * 120.07012 * 0.55604 * 11 10 9 13 13 N 1.39042 * 119.93251 * 179.73879 * 12 11 10 14 14 C 1.46499 * 119.99680 * 185.43202 * 13 12 11 15 15 C 1.46493 * 119.99952 * 5.43893 * 13 12 11 16 16 C 1.39227 * 120.13466 * 359.72204 * 12 11 10 17 17 C 1.37606 * 120.06942 * 359.97438 * 16 12 11 18 18 C 1.46930 * 118.73324 * 306.38753 * 6 5 3 19 19 C 1.53188 * 108.77654 * 53.61035 * 18 6 5 20 20 C 1.53034 * 109.33934 * 305.37731 * 19 18 6 21 21 H 1.08996 * 109.43290 * 301.30877 * 20 19 18 22 22 N 1.46508 * 109.48367 * 181.35365 * 20 19 18 23 23 C 1.36935 * 119.99902 * 84.92024 * 22 20 19 24 24 H 1.08005 * 119.99782 * 359.97438 * 23 22 20 25 25 C 1.38808 * 119.99971 * 180.02562 * 23 22 20 26 26 N 1.31617 * 120.00220 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 120.00085 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47445 * 89.99540 * 27 25 23 29 29 H 1.48502 * 109.47331 * 209.99578 * 27 25 23 30 30 H 1.48504 * 109.46939 * 329.99436 * 27 25 23 31 31 H 1.08999 * 109.47310 * 299.99638 * 1 2 3 32 32 H 1.08999 * 109.46638 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.47533 * 60.00132 * 1 2 3 34 34 H 1.09002 * 109.47519 * 119.99364 * 2 1 3 35 35 H 1.08999 * 109.47310 * 240.00361 * 2 1 3 36 36 H 1.09004 * 109.58399 * 294.37215 * 5 3 2 37 37 H 1.08998 * 109.58875 * 54.64796 * 5 3 2 38 38 H 1.08003 * 120.02959 * 359.97438 * 10 9 7 39 39 H 1.07999 * 119.96656 * 180.30002 * 11 10 9 40 40 H 1.09003 * 109.46928 * 90.00936 * 14 13 12 41 41 H 1.09007 * 109.47067 * 210.00020 * 14 13 12 42 42 H 1.09002 * 109.47657 * 329.99930 * 14 13 12 43 43 H 1.08997 * 109.47408 * 354.73058 * 15 13 12 44 44 H 1.08997 * 109.47520 * 114.73421 * 15 13 12 45 45 H 1.09002 * 109.46959 * 234.73159 * 15 13 12 46 46 H 1.07994 * 119.96237 * 180.02562 * 16 12 11 47 47 H 1.07998 * 120.03432 * 180.02562 * 17 16 12 48 48 H 1.09004 * 109.58034 * 173.39917 * 18 6 5 49 49 H 1.08992 * 109.58669 * 293.82073 * 18 6 5 50 50 H 1.09003 * 109.49907 * 65.31586 * 19 18 6 51 51 H 1.08999 * 109.49596 * 185.40907 * 19 18 6 52 52 H 0.97001 * 120.00002 * 264.91009 * 22 20 19 53 53 H 0.97000 * 120.00382 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6055 1.9820 -0.8416 5 6 1.6364 2.1276 1.3095 6 7 2.2428 3.4652 1.3499 7 6 1.4831 4.5573 1.5655 8 8 0.2733 4.4534 1.6302 9 6 2.1193 5.8790 1.7230 10 6 3.3743 5.9845 2.3296 11 6 3.9677 7.2181 2.4698 12 6 3.3144 8.3617 2.0187 13 7 3.9142 9.6074 2.1668 14 6 3.1801 10.8217 1.8025 15 6 5.2801 9.7054 2.6869 16 6 2.0618 8.2606 1.4194 17 6 1.4660 7.0292 1.2706 18 6 3.6933 3.5895 1.1512 19 6 4.0738 2.8882 -0.1565 20 6 3.5653 1.4451 -0.1241 21 1 4.0001 0.9265 0.7302 22 7 3.9556 0.7617 -1.3599 23 6 5.1938 0.1859 -1.4621 24 1 5.8828 0.2360 -0.6319 25 6 5.5637 -0.4611 -2.6331 26 7 4.7243 -0.5217 -3.6450 27 14 7.2531 -1.2460 -2.7728 28 1 7.1842 -2.6551 -2.3093 29 1 7.6991 -1.2120 -4.1889 30 1 8.2190 -0.4947 -1.9314 31 1 -0.3634 0.5138 0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 -0.3634 0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 0.5510 2.2169 1.3558 37 1 1.9908 1.5377 2.1547 38 1 3.8794 5.0981 2.6841 39 1 4.9394 7.2997 2.9340 40 1 2.6291 11.1869 2.6691 41 1 3.8833 11.5857 1.4708 42 1 2.4818 10.5962 0.9964 43 1 5.6262 8.7166 2.9877 44 1 5.9368 10.0998 1.9115 45 1 5.2938 10.3728 3.5486 46 1 1.5577 9.1495 1.0701 47 1 0.4945 6.9514 0.8052 48 1 3.9651 4.6435 1.0931 49 1 4.2176 3.1202 1.9835 50 1 3.6207 3.4143 -0.9967 51 1 5.1580 2.8894 -0.2678 52 1 3.3368 0.7170 -2.1056 53 1 4.9827 -0.9742 -4.4632 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037965384.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:22 Heat of formation + Delta-G solvation = 5.736223 kcal Electronic energy + Delta-G solvation = -30909.598041 eV Core-core repulsion = 26974.144576 eV Total energy + Delta-G solvation = -3935.453466 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.68053 -40.28182 -39.02668 -37.05568 -36.17644 -35.30060 -33.43612 -32.31055 -31.48540 -31.05387 -29.77106 -29.00694 -27.09247 -25.93722 -25.16844 -24.49293 -23.21043 -22.47970 -22.04663 -21.16935 -20.47465 -19.06821 -18.44684 -18.03298 -17.27256 -16.77141 -16.67990 -16.11173 -15.95305 -15.76077 -15.64544 -15.54183 -15.18402 -14.74904 -14.71694 -14.66548 -14.52408 -14.26534 -13.98387 -13.69929 -13.46381 -13.40305 -13.25319 -13.10943 -12.96267 -12.84610 -12.83765 -12.81068 -12.54309 -12.46914 -12.14115 -12.06576 -11.82136 -11.67633 -11.53861 -11.49981 -11.07869 -10.97295 -10.87924 -10.63249 -9.90135 -9.64320 -8.93537 -8.24620 -7.88756 -5.16366 0.15396 0.47900 1.49588 1.50744 1.58761 1.80901 2.07438 2.19755 2.59674 2.91620 3.44284 3.57773 3.77547 3.81070 3.86199 3.92379 4.03823 4.10522 4.20749 4.27886 4.34503 4.41040 4.42511 4.47440 4.48720 4.50417 4.55034 4.64452 4.67532 4.75653 4.80229 4.81955 4.84803 4.90482 4.92950 4.94128 5.02439 5.07780 5.10850 5.15906 5.23462 5.27863 5.36129 5.39988 5.47600 5.52328 5.55646 5.60799 5.69073 5.76331 6.27710 6.32195 6.44078 6.47417 7.18113 7.38652 8.14822 8.38531 9.34979 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.011357 B = 0.002751 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.901055 B =10176.400728 C =12028.042570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.092 4.092 4 H 0.046 0.954 5 C 0.125 3.875 6 N -0.603 5.603 7 C 0.561 3.439 8 O -0.591 6.591 9 C -0.217 4.217 10 C -0.038 4.038 11 C -0.212 4.212 12 C 0.236 3.764 13 N -0.634 5.634 14 C 0.082 3.918 15 C 0.078 3.922 16 C -0.214 4.214 17 C -0.025 4.025 18 C 0.102 3.898 19 C -0.142 4.142 20 C 0.180 3.820 21 H 0.051 0.949 22 N -0.731 5.731 23 C -0.227 4.227 24 H 0.079 0.921 25 C -0.079 4.079 26 N -0.972 5.972 27 Si 0.968 3.032 28 H -0.290 1.290 29 H -0.302 1.302 30 H -0.266 1.266 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.042 0.958 34 H 0.067 0.933 35 H 0.047 0.953 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.150 0.850 39 H 0.155 0.845 40 H 0.057 0.943 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.064 0.936 45 H 0.071 0.929 46 H 0.144 0.856 47 H 0.119 0.881 48 H 0.111 0.889 49 H 0.094 0.906 50 H 0.037 0.963 51 H 0.069 0.931 52 H 0.369 0.631 53 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.009 21.896 16.603 27.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.144 4.144 3 C -0.113 4.113 4 H 0.065 0.935 5 C 0.003 3.997 6 N -0.333 5.333 7 C 0.353 3.647 8 O -0.473 6.473 9 C -0.222 4.222 10 C -0.057 4.057 11 C -0.234 4.234 12 C 0.130 3.870 13 N -0.342 5.342 14 C -0.060 4.060 15 C -0.064 4.064 16 C -0.236 4.236 17 C -0.045 4.045 18 C -0.021 4.021 19 C -0.183 4.183 20 C 0.071 3.929 21 H 0.069 0.931 22 N -0.370 5.370 23 C -0.359 4.359 24 H 0.097 0.903 25 C -0.271 4.271 26 N -0.624 5.624 27 Si 0.798 3.202 28 H -0.218 1.218 29 H -0.229 1.229 30 H -0.191 1.191 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.167 0.833 39 H 0.172 0.828 40 H 0.075 0.925 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.104 0.896 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.162 0.838 47 H 0.137 0.863 48 H 0.129 0.871 49 H 0.112 0.888 50 H 0.056 0.944 51 H 0.088 0.912 52 H 0.201 0.799 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.326 21.994 16.724 27.662 hybrid contribution 0.420 -0.777 -1.229 1.513 sum -0.907 21.217 15.495 26.288 Atomic orbital electron populations 1.21775 0.95014 1.01891 1.01610 1.21354 0.95965 0.95107 1.02022 1.21622 0.95974 0.96448 0.97212 0.93535 1.21646 0.99295 0.81790 0.96993 1.48070 1.09046 1.06310 1.69900 1.18699 0.85955 0.84840 0.75231 1.90702 1.15597 1.86816 1.54214 1.19532 0.98583 0.92202 1.11929 1.21443 0.91848 0.98587 0.93844 1.20916 1.03152 0.90632 1.08670 1.18192 0.91599 0.86321 0.90871 1.46559 1.15772 1.03196 1.68695 1.21856 0.97497 0.85865 1.00773 1.21957 0.81045 1.03960 0.99392 1.20749 0.96742 0.97995 1.08105 1.20946 0.98080 0.91174 0.94328 1.22450 0.78931 1.03044 0.97632 1.22489 1.01293 0.97715 0.96804 1.20416 0.92211 0.91199 0.89033 0.93052 1.42606 1.15521 1.64959 1.13910 1.19607 0.92505 1.25496 0.98304 0.90280 1.25499 1.01640 1.03354 0.96566 1.69829 1.37165 1.50199 1.05189 0.85210 0.80415 0.78381 0.76204 1.21776 1.22871 1.19108 0.91795 0.91975 0.93840 0.91436 0.93468 0.89783 0.89658 0.83252 0.82782 0.92468 0.89678 0.90985 0.89609 0.91791 0.91045 0.83832 0.86280 0.87107 0.88829 0.94371 0.91232 0.79920 0.94361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.18 9.67 71.98 0.70 -3.48 16 2 C -0.11 -3.57 5.31 30.59 0.16 -3.41 16 3 C -0.09 -3.17 1.92 -10.71 -0.02 -3.19 16 4 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 5 C 0.13 3.73 5.33 86.36 0.46 4.20 16 6 N -0.60 -17.59 2.97 -822.69 -2.45 -20.03 16 7 C 0.56 17.91 7.40 86.69 0.64 18.55 16 8 O -0.59 -22.84 16.19 -4.02 -0.07 -22.91 16 9 C -0.22 -5.72 5.37 -20.08 -0.11 -5.83 16 10 C -0.04 -0.77 7.34 22.50 0.17 -0.61 16 11 C -0.21 -3.58 9.29 22.36 0.21 -3.37 16 12 C 0.24 4.14 6.54 38.47 0.25 4.39 16 13 N -0.63 -8.02 3.39 -747.31 -2.53 -10.55 16 14 C 0.08 0.70 10.34 127.77 1.32 2.02 16 15 C 0.08 0.61 10.62 127.77 1.36 1.97 16 16 C -0.21 -4.18 9.23 22.36 0.21 -3.97 16 17 C -0.03 -0.63 9.59 22.50 0.22 -0.42 16 18 C 0.10 2.57 4.74 86.36 0.41 2.98 16 19 C -0.14 -4.80 5.66 30.67 0.17 -4.62 16 20 C 0.18 6.84 2.19 45.02 0.10 6.94 16 21 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 22 N -0.73 -35.95 4.33 -322.80 -1.40 -37.35 16 23 C -0.23 -12.18 9.93 84.03 0.83 -11.35 16 24 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 25 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 26 N -0.97 -59.68 13.06 21.65 0.28 -59.39 16 27 Si 0.97 45.67 29.55 68.60 2.03 47.70 16 28 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 29 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 30 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 31 H 0.06 1.66 6.70 -2.39 -0.02 1.64 16 32 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.05 1.94 7.22 -2.39 -0.02 1.92 16 36 H 0.08 2.66 5.72 -2.39 -0.01 2.65 16 37 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.15 2.51 5.79 -2.91 -0.02 2.50 16 39 H 0.15 1.76 5.71 -2.91 -0.02 1.74 16 40 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.08 0.44 8.07 -2.38 -0.02 0.42 16 42 H 0.07 0.62 5.97 -2.39 -0.01 0.61 16 43 H 0.09 0.59 5.28 -2.39 -0.01 0.58 16 44 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 46 H 0.14 2.19 6.01 -2.91 -0.02 2.17 16 47 H 0.12 3.08 7.97 -2.91 -0.02 3.06 16 48 H 0.11 2.48 4.30 -2.39 -0.01 2.47 16 49 H 0.09 1.93 8.03 -2.39 -0.02 1.91 16 50 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 51 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 52 H 0.37 20.16 7.51 -92.71 -0.70 19.47 16 53 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -72.01 406.69 3.63 -68.38 By element: Atomic # 1 Polarization: 37.14 SS G_CDS: 0.22 Total: 37.36 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: 7.54 Total: -3.20 kcal Atomic # 7 Polarization: -121.24 SS G_CDS: -6.10 Total: -127.33 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.07 Total: -22.91 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -72.01 3.63 -68.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037965384.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.116 kcal (2) G-P(sol) polarization free energy of solvation -72.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds