Wall clock time and date at job start Wed Apr 1 2020 04:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.46821 * 2 1 4 4 H 1.08993 * 109.52539 * 54.92394 * 3 2 1 5 5 C 1.53187 * 109.50011 * 294.83805 * 3 2 1 6 6 N 1.46960 * 108.89110 * 185.49271 * 5 3 2 7 7 C 1.34784 * 120.65692 * 233.53774 * 6 5 3 8 8 O 1.21552 * 119.99541 * 355.99902 * 7 6 5 9 9 C 1.47861 * 120.00270 * 175.99414 * 7 6 5 10 10 C 1.39615 * 120.10430 * 50.77845 * 9 7 6 11 11 C 1.37986 * 120.00424 * 179.97438 * 10 9 7 12 12 C 1.38249 * 120.22740 * 359.97438 * 11 10 9 13 13 C 1.38986 * 120.21878 * 359.97438 * 12 11 10 14 14 N 1.39703 * 120.00721 * 180.02562 * 13 12 11 15 15 C 1.46500 * 119.99772 * 0.02562 * 14 13 12 16 16 C 1.46497 * 120.00507 * 179.97438 * 14 13 12 17 17 C 1.38690 * 119.98880 * 359.78491 * 13 12 11 18 18 C 1.46927 * 118.71612 * 53.35889 * 6 5 3 19 19 C 1.53191 * 108.88863 * 306.64304 * 18 6 5 20 20 C 1.53035 * 109.31736 * 54.56367 * 19 18 6 21 21 H 1.09001 * 109.46097 * 58.65004 * 20 19 18 22 22 N 1.46496 * 109.46369 * 178.61048 * 20 19 18 23 23 C 1.36934 * 120.00296 * 275.00206 * 22 20 19 24 24 H 1.08001 * 119.99992 * 359.97438 * 23 22 20 25 25 C 1.38810 * 120.00262 * 179.97438 * 23 22 20 26 26 N 1.31620 * 120.00412 * 180.02562 * 25 23 22 27 27 Si 1.86807 * 119.99900 * 359.97438 * 25 23 22 28 28 H 1.48500 * 109.46913 * 89.99998 * 27 25 23 29 29 H 1.48495 * 109.47004 * 209.99999 * 27 25 23 30 30 H 1.48504 * 109.46818 * 329.99949 * 27 25 23 31 31 H 1.09003 * 109.47902 * 60.00068 * 1 2 3 32 32 H 1.09002 * 109.47265 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47484 * 299.99580 * 1 2 3 34 34 H 1.09009 * 109.47049 * 240.00386 * 2 1 3 35 35 H 1.08990 * 109.47548 * 119.99927 * 2 1 3 36 36 H 1.09001 * 109.59345 * 305.20256 * 5 3 2 37 37 H 1.09001 * 109.58869 * 65.62888 * 5 3 2 38 38 H 1.07993 * 120.00223 * 359.97438 * 10 9 7 39 39 H 1.08000 * 119.88688 * 179.97438 * 11 10 9 40 40 H 1.07992 * 119.89033 * 180.02562 * 12 11 10 41 41 H 1.08995 * 109.47857 * 89.99537 * 15 14 13 42 42 H 1.09008 * 109.47046 * 210.00107 * 15 14 13 43 43 H 1.09007 * 109.47211 * 329.99345 * 15 14 13 44 44 H 1.09005 * 109.46681 * 89.99839 * 16 14 13 45 45 H 1.08999 * 109.47807 * 210.00062 * 16 14 13 46 46 H 1.08997 * 109.47109 * 330.01048 * 16 14 13 47 47 H 1.08001 * 120.11170 * 180.23305 * 17 13 12 48 48 H 1.08997 * 109.58738 * 186.78373 * 18 6 5 49 49 H 1.08999 * 109.58649 * 66.50128 * 18 6 5 50 50 H 1.09003 * 109.49893 * 174.51809 * 19 18 6 51 51 H 1.09008 * 109.50104 * 294.60856 * 19 18 6 52 52 H 0.97003 * 119.99575 * 94.99754 * 22 20 19 53 53 H 0.96993 * 120.00248 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6047 1.9827 0.8407 5 6 1.6384 2.1268 -1.3104 6 7 2.2454 3.4645 -1.3541 7 6 1.4866 4.5566 -1.5736 8 8 0.3005 4.4350 -1.8100 9 6 2.0970 5.9026 -1.5267 10 6 3.2525 6.1734 -2.2620 11 6 3.8201 7.4304 -2.2172 12 6 3.2482 8.4252 -1.4461 13 6 2.0973 8.1661 -0.7113 14 7 1.5228 9.1748 0.0660 15 6 2.1332 10.5060 0.1061 16 6 0.3094 8.9018 0.8402 17 6 1.5165 6.9074 -0.7536 18 6 3.6951 3.5889 -1.1499 19 6 4.0735 2.8882 0.1588 20 6 3.5651 1.4451 0.1257 21 1 4.0007 0.9262 -0.7282 22 7 3.9542 0.7621 1.3619 23 6 5.1918 0.1852 1.4652 24 1 5.8810 0.2334 0.6350 25 6 5.5606 -0.4615 2.6367 26 7 6.7503 -1.0156 2.7362 27 14 4.3688 -0.5443 4.0729 28 1 3.5344 -1.7669 3.9538 29 1 5.1309 -0.5871 5.3466 30 1 3.4938 0.6555 4.0596 31 1 -0.3635 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5137 0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5138 0.8899 36 1 1.9963 1.5378 -2.1549 37 1 0.5531 2.2161 -1.3585 38 1 3.7022 5.3993 -2.8660 39 1 4.7142 7.6377 -2.7865 40 1 3.6968 9.4071 -1.4154 41 1 1.7083 11.1246 -0.6843 42 1 1.9362 10.9671 1.0740 43 1 3.2096 10.4168 -0.0414 44 1 0.5844 8.5451 1.8328 45 1 -0.2764 9.8163 0.9321 46 1 -0.2824 8.1407 0.3317 47 1 0.6200 6.7050 -0.1863 48 1 3.9668 4.6429 -1.0919 49 1 4.2226 3.1207 -1.9809 50 1 5.1576 2.8895 0.2719 51 1 3.6191 3.4148 0.9981 52 1 3.3350 0.7186 2.1074 53 1 7.0079 -1.4678 3.5547 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037970838.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:31 Heat of formation + Delta-G solvation = -0.625051 kcal Electronic energy + Delta-G solvation = -31198.422342 eV Core-core repulsion = 27262.693031 eV Total energy + Delta-G solvation = -3935.729311 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.71614 -40.27578 -39.10848 -37.10223 -36.27166 -35.33749 -33.61734 -32.39079 -31.50268 -31.25403 -29.97035 -29.10394 -26.89393 -25.82374 -25.23867 -24.58798 -23.45550 -22.32567 -22.04175 -21.30923 -20.43713 -19.48336 -18.56471 -17.78064 -17.18478 -16.83209 -16.70473 -16.33240 -16.10631 -15.97845 -15.90338 -15.39005 -15.20763 -14.85089 -14.73354 -14.67581 -14.54682 -14.34477 -14.03451 -13.95348 -13.53108 -13.45530 -13.31737 -13.18235 -13.04220 -12.97506 -12.89437 -12.74446 -12.57448 -12.39303 -12.15396 -12.11072 -12.01916 -11.84320 -11.63764 -11.56902 -11.13861 -11.03507 -10.93718 -10.64775 -9.94495 -9.69540 -9.25962 -8.24699 -7.99317 -5.30867 0.08375 0.58318 1.37752 1.38925 1.45954 1.57849 1.95891 2.24076 2.49315 2.86370 3.31762 3.39949 3.54306 3.72925 3.91711 3.94578 4.01750 4.09540 4.19010 4.21210 4.28881 4.33485 4.38631 4.40321 4.45113 4.48884 4.55802 4.59950 4.67653 4.71845 4.77257 4.78334 4.80481 4.83551 4.89057 4.90649 4.94859 4.99420 5.03327 5.14499 5.21831 5.25468 5.32059 5.42036 5.44322 5.48486 5.54760 5.61929 5.81138 5.81402 6.24994 6.28829 6.32663 6.47986 7.02673 7.10700 7.87564 8.06082 9.22312 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.011510 B = 0.002923 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.060252 B = 9575.776085 C =10320.922084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C -0.096 4.096 4 H 0.059 0.941 5 C 0.124 3.876 6 N -0.597 5.597 7 C 0.559 3.441 8 O -0.580 6.580 9 C -0.092 4.092 10 C -0.154 4.154 11 C -0.070 4.070 12 C -0.180 4.180 13 C 0.202 3.798 14 N -0.645 5.645 15 C 0.089 3.911 16 C 0.088 3.912 17 C -0.170 4.170 18 C 0.105 3.895 19 C -0.142 4.142 20 C 0.183 3.817 21 H 0.052 0.948 22 N -0.747 5.747 23 C -0.216 4.216 24 H 0.063 0.937 25 C -0.061 4.061 26 N -0.984 5.984 27 Si 0.944 3.056 28 H -0.280 1.280 29 H -0.299 1.299 30 H -0.259 1.259 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.139 0.861 39 H 0.159 0.841 40 H 0.150 0.850 41 H 0.056 0.944 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.048 0.952 45 H 0.088 0.912 46 H 0.058 0.942 47 H 0.115 0.885 48 H 0.108 0.892 49 H 0.089 0.911 50 H 0.066 0.934 51 H 0.047 0.953 52 H 0.361 0.639 53 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.179 22.821 -9.715 27.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C -0.116 4.116 4 H 0.077 0.923 5 C 0.002 3.998 6 N -0.327 5.327 7 C 0.348 3.652 8 O -0.461 6.461 9 C -0.095 4.095 10 C -0.175 4.175 11 C -0.088 4.088 12 C -0.203 4.203 13 C 0.099 3.901 14 N -0.357 5.357 15 C -0.053 4.053 16 C -0.055 4.055 17 C -0.193 4.193 18 C -0.017 4.017 19 C -0.183 4.183 20 C 0.075 3.925 21 H 0.070 0.930 22 N -0.389 5.389 23 C -0.347 4.347 24 H 0.081 0.919 25 C -0.253 4.253 26 N -0.635 5.635 27 Si 0.773 3.227 28 H -0.206 1.206 29 H -0.226 1.226 30 H -0.184 1.184 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.157 0.843 39 H 0.176 0.824 40 H 0.167 0.833 41 H 0.075 0.925 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.067 0.933 45 H 0.107 0.893 46 H 0.077 0.923 47 H 0.133 0.867 48 H 0.126 0.874 49 H 0.107 0.893 50 H 0.085 0.915 51 H 0.066 0.934 52 H 0.194 0.806 53 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.679 22.830 -9.775 27.444 hybrid contribution -0.361 -0.660 1.485 1.665 sum -12.040 22.170 -8.290 26.556 Atomic orbital electron populations 1.21800 0.94727 1.02109 1.01877 1.21417 0.96213 0.94860 1.02428 1.21684 0.95460 0.96848 0.97621 0.92277 1.21706 0.99438 0.81550 0.97149 1.48137 1.09123 1.06332 1.69124 1.18790 0.85532 0.85157 0.75685 1.90723 1.16958 1.87289 1.51120 1.19540 0.97189 0.92270 1.00544 1.21246 0.95285 0.99021 1.01936 1.21195 0.99536 0.91289 0.96771 1.21158 0.96418 1.01784 1.00920 1.17845 0.92830 0.87849 0.91563 1.46562 1.29010 1.10402 1.49676 1.21823 0.99001 0.81773 1.02731 1.21733 0.86233 1.02628 0.94923 1.20588 1.01840 0.92316 1.04550 1.22194 0.78619 1.03281 0.97640 1.22449 1.01400 0.97420 0.97032 1.20397 0.92506 0.91151 0.88467 0.92952 1.42796 1.15063 1.66484 1.14556 1.19010 0.91468 1.25143 0.99047 0.91880 1.25349 0.98117 1.01205 1.00602 1.69856 1.21621 1.43773 1.28246 0.85563 0.78966 0.78520 0.79638 1.20611 1.22629 1.18405 0.91894 0.91881 0.93273 0.91375 0.92942 0.89786 0.89293 0.84331 0.82356 0.83259 0.92513 0.90127 0.90472 0.93338 0.89317 0.92324 0.86671 0.87366 0.89301 0.91512 0.93387 0.80567 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.67 71.98 0.70 -2.91 16 2 C -0.11 -3.26 5.31 30.59 0.16 -3.10 16 3 C -0.10 -2.93 1.93 -10.72 -0.02 -2.95 16 4 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 5 C 0.12 3.38 5.31 86.35 0.46 3.84 16 6 N -0.60 -16.38 2.98 -822.21 -2.45 -18.83 16 7 C 0.56 16.85 7.24 86.79 0.63 17.48 16 8 O -0.58 -21.14 16.47 -3.88 -0.06 -21.21 16 9 C -0.09 -2.36 5.00 -20.11 -0.10 -2.46 16 10 C -0.15 -3.08 7.36 22.54 0.17 -2.92 16 11 C -0.07 -1.10 10.02 22.21 0.22 -0.87 16 12 C -0.18 -2.95 9.20 22.45 0.21 -2.75 16 13 C 0.20 4.11 6.55 38.17 0.25 4.36 16 14 N -0.64 -10.54 3.41 -747.39 -2.55 -13.09 16 15 C 0.09 0.85 10.19 127.77 1.30 2.15 16 16 C 0.09 1.26 10.19 127.77 1.30 2.56 16 17 C -0.17 -4.24 8.89 22.67 0.20 -4.04 16 18 C 0.11 2.62 5.37 86.36 0.46 3.08 16 19 C -0.14 -4.59 5.66 30.67 0.17 -4.41 16 20 C 0.18 6.54 2.19 45.02 0.10 6.64 16 21 H 0.05 1.94 8.08 -2.39 -0.02 1.92 16 22 N -0.75 -33.54 4.13 -322.82 -1.33 -34.87 16 23 C -0.22 -11.81 10.41 84.03 0.87 -10.94 16 24 H 0.06 3.75 8.06 -2.91 -0.02 3.73 16 25 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 26 N -0.98 -62.33 13.97 21.65 0.30 -62.02 16 27 Si 0.94 45.62 27.74 68.60 1.90 47.52 16 28 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 29 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 30 H -0.26 -11.53 6.52 99.48 0.65 -10.89 16 31 H 0.06 1.41 6.70 -2.39 -0.02 1.40 16 32 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 35 H 0.05 1.80 7.22 -2.39 -0.02 1.79 16 36 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.09 2.54 5.75 -2.39 -0.01 2.52 16 38 H 0.14 2.37 7.07 -2.91 -0.02 2.35 16 39 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 40 H 0.15 1.63 6.12 -2.91 -0.02 1.62 16 41 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.08 0.55 8.07 -2.38 -0.02 0.53 16 43 H 0.08 0.62 6.19 -2.38 -0.01 0.61 16 44 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 45 H 0.09 0.85 8.07 -2.39 -0.02 0.83 16 46 H 0.06 0.98 6.18 -2.39 -0.01 0.96 16 47 H 0.12 3.04 6.13 -2.91 -0.02 3.02 16 48 H 0.11 2.41 4.55 -2.39 -0.01 2.40 16 49 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 50 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 51 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 52 H 0.36 16.15 5.38 -92.71 -0.50 15.65 16 53 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -73.01 406.80 3.71 -69.30 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: 0.35 Total: 33.53 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 7.55 Total: -0.33 kcal Atomic # 7 Polarization: -122.78 SS G_CDS: -6.03 Total: -128.81 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.06 Total: -21.21 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.90 Total: 47.52 kcal Total: -73.01 3.71 -69.30 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037970838.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.677 kcal (2) G-P(sol) polarization free energy of solvation -73.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds