Wall clock time and date at job start Wed Apr 1 2020 04:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47366 * 2 1 4 4 H 1.09004 * 109.49901 * 55.06725 * 3 2 1 5 5 C 1.53194 * 109.49782 * 295.00170 * 3 2 1 6 6 N 1.46927 * 108.77397 * 185.37944 * 5 3 2 7 7 C 1.34773 * 120.62932 * 233.58302 * 6 5 3 8 8 O 1.21283 * 120.00360 * 359.73029 * 7 6 5 9 9 C 1.50706 * 120.00081 * 180.02562 * 7 6 5 10 10 N 1.46493 * 109.47128 * 179.72554 * 9 7 6 11 11 C 1.46497 * 120.00235 * 269.99530 * 10 9 7 12 12 C 1.39683 * 119.99906 * 90.00054 * 10 9 7 13 13 C 1.38914 * 120.07212 * 359.72276 * 12 10 9 14 14 C 1.38102 * 119.91900 * 179.76820 * 13 12 10 15 15 C 1.38285 * 120.07685 * 0.50410 * 14 13 12 16 16 C 1.38278 * 120.15064 * 359.74758 * 15 14 13 17 17 C 1.38105 * 120.07792 * 0.02562 * 16 15 14 18 18 C 1.46920 * 118.73693 * 53.86414 * 6 5 3 19 19 C 1.53624 * 108.54629 * 306.08894 * 18 6 5 20 20 C 1.53039 * 109.23883 * 54.85831 * 19 18 6 21 21 H 1.09000 * 109.46038 * 58.52908 * 20 19 18 22 22 N 1.46504 * 109.46081 * 178.49449 * 20 19 18 23 23 C 1.36930 * 119.99675 * 275.06879 * 22 20 19 24 24 H 1.08003 * 120.00499 * 359.97438 * 23 22 20 25 25 C 1.38815 * 119.99930 * 179.97438 * 23 22 20 26 26 N 1.31617 * 120.00072 * 179.97438 * 25 23 22 27 27 Si 1.86806 * 119.99956 * 359.97438 * 25 23 22 28 28 H 1.48499 * 109.46996 * 89.99671 * 27 25 23 29 29 H 1.48500 * 109.47053 * 209.99974 * 27 25 23 30 30 H 1.48501 * 109.46888 * 329.99890 * 27 25 23 31 31 H 1.09000 * 109.47504 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46764 * 300.00318 * 1 2 3 33 33 H 1.08997 * 109.47060 * 59.99831 * 1 2 3 34 34 H 1.09002 * 109.46335 * 239.99933 * 2 1 3 35 35 H 1.08997 * 109.47060 * 120.00169 * 2 1 3 36 36 H 1.09006 * 109.58516 * 65.59785 * 5 3 2 37 37 H 1.08996 * 109.58528 * 305.16814 * 5 3 2 38 38 H 1.09001 * 109.46564 * 299.73030 * 9 7 6 39 39 H 1.08998 * 109.47012 * 59.72084 * 9 7 6 40 40 H 1.09001 * 109.46952 * 90.00735 * 11 10 9 41 41 H 1.08998 * 109.47569 * 210.00215 * 11 10 9 42 42 H 1.08997 * 109.47185 * 330.00886 * 11 10 9 43 43 H 1.07998 * 120.03749 * 0.02562 * 13 12 10 44 44 H 1.08001 * 119.95919 * 180.25131 * 14 13 12 45 45 H 1.08003 * 119.92136 * 179.76386 * 15 14 13 46 46 H 1.08000 * 119.96266 * 180.02562 * 16 15 14 47 47 H 1.07994 * 120.04367 * 180.02562 * 17 16 15 48 48 H 1.08997 * 109.58983 * 65.92432 * 18 6 5 49 49 H 1.09010 * 109.58497 * 186.34847 * 18 6 5 50 50 H 1.08997 * 109.63248 * 294.86961 * 19 18 6 51 51 H 1.08992 * 109.43890 * 174.72607 * 19 18 6 52 52 H 0.97004 * 119.99740 * 95.06479 * 22 20 19 53 53 H 0.97000 * 119.99925 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6066 1.9816 0.8424 5 6 1.6351 2.1280 -1.3088 6 7 2.2410 3.4659 -1.3489 7 6 1.4806 4.5578 -1.5634 8 8 0.2850 4.4411 -1.7303 9 6 2.1170 5.9234 -1.6023 10 7 1.0877 6.9348 -1.8546 11 6 0.7590 7.3183 -3.2298 12 6 0.4197 7.5336 -0.7839 13 6 0.7262 7.1670 0.5204 14 6 0.0671 7.7645 1.5768 15 6 -0.9042 8.7191 1.3369 16 6 -1.2153 9.0826 0.0395 17 6 -0.5569 8.4925 -1.0214 18 6 3.6923 3.5902 -1.1571 19 6 4.0735 2.8888 0.1555 20 6 3.5656 1.4456 0.1220 21 1 3.9993 0.9277 -0.7335 22 7 3.9579 0.7613 1.3566 23 6 5.1964 0.1861 1.4567 24 1 5.8841 0.2364 0.6254 25 6 5.5683 -0.4617 2.6267 26 7 6.7587 -1.0151 2.7227 27 14 4.3794 -0.5482 4.0649 28 1 3.5464 -1.7718 3.9457 29 1 5.1439 -0.5917 5.3373 30 1 3.5026 0.6504 4.0550 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.8932 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 0.5496 2.2169 -1.3540 37 1 1.9913 1.5400 -2.1546 38 1 2.5997 6.1266 -0.6464 39 1 2.8606 5.9551 -2.3987 40 1 -0.0381 6.6767 -3.6052 41 1 0.4285 8.3568 -3.2483 42 1 1.6420 7.2067 -3.8590 43 1 1.4818 6.4186 0.7083 44 1 0.3078 7.4829 2.5913 45 1 -1.4207 9.1820 2.1648 46 1 -1.9741 9.8288 -0.1443 47 1 -0.8001 8.7771 -2.0344 48 1 4.2128 3.1190 -1.9908 49 1 3.9647 4.6443 -1.1023 50 1 3.6209 3.4143 0.9963 51 1 5.1578 2.8904 0.2659 52 1 3.3401 0.7159 2.1032 53 1 7.0187 -1.4675 3.5405 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037975535.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:03 Heat of formation + Delta-G solvation = -1.486236 kcal Electronic energy + Delta-G solvation = -31304.602392 eV Core-core repulsion = 27368.835737 eV Total energy + Delta-G solvation = -3935.766655 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.50905 -40.33526 -39.13297 -36.87617 -36.25119 -35.37426 -33.60514 -32.13172 -31.50505 -31.14968 -30.40334 -29.26805 -26.83874 -25.81882 -25.07332 -24.12029 -23.15441 -22.23088 -22.02449 -21.28473 -20.19521 -19.43098 -18.69586 -18.29414 -17.24454 -16.78449 -16.61267 -16.29341 -16.23563 -16.03564 -15.44244 -15.22979 -15.21056 -14.79276 -14.72012 -14.66879 -14.50547 -14.44465 -14.14913 -14.03561 -13.86849 -13.46288 -13.31207 -13.08883 -12.93461 -12.90945 -12.80471 -12.67760 -12.56328 -12.28451 -12.13394 -12.11098 -11.84979 -11.68084 -11.64092 -11.58557 -11.29984 -11.12933 -10.91821 -10.53009 -9.80635 -9.66322 -9.26284 -8.23930 -7.99962 -5.31269 0.55609 0.71408 1.37519 1.38430 1.45535 1.59423 1.84170 2.29771 2.48740 3.02017 3.31788 3.48331 3.56495 3.75501 3.89849 3.96374 3.97962 4.01094 4.13040 4.20762 4.28351 4.31095 4.37994 4.39532 4.41341 4.43935 4.58943 4.63103 4.64116 4.66873 4.74860 4.77961 4.81002 4.85172 4.87014 4.92922 4.98087 5.02396 5.13550 5.16329 5.22865 5.32401 5.36014 5.43045 5.49689 5.61971 5.63559 5.76458 5.80900 5.97561 6.22349 6.24517 6.44970 6.54003 7.10406 7.17297 7.87678 8.05508 9.21610 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.012921 B = 0.002801 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.476455 B = 9995.309574 C =10509.820401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C -0.095 4.095 4 H 0.057 0.943 5 C 0.126 3.874 6 N -0.607 5.607 7 C 0.489 3.511 8 O -0.575 6.575 9 C 0.106 3.894 10 N -0.618 5.618 11 C 0.093 3.907 12 C 0.207 3.793 13 C -0.214 4.214 14 C -0.086 4.086 15 C -0.191 4.191 16 C -0.079 4.079 17 C -0.207 4.207 18 C 0.113 3.887 19 C -0.145 4.145 20 C 0.182 3.818 21 H 0.050 0.950 22 N -0.748 5.748 23 C -0.215 4.215 24 H 0.064 0.936 25 C -0.061 4.061 26 N -0.984 5.984 27 Si 0.944 3.056 28 H -0.282 1.282 29 H -0.299 1.299 30 H -0.258 1.258 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.050 0.950 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.115 0.885 39 H 0.139 0.861 40 H 0.034 0.966 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.113 0.887 44 H 0.128 0.872 45 H 0.134 0.866 46 H 0.143 0.857 47 H 0.136 0.864 48 H 0.087 0.913 49 H 0.112 0.888 50 H 0.053 0.947 51 H 0.067 0.933 52 H 0.361 0.639 53 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.905 20.250 -11.861 27.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C -0.115 4.115 4 H 0.075 0.925 5 C 0.003 3.997 6 N -0.340 5.340 7 C 0.277 3.723 8 O -0.454 6.454 9 C -0.021 4.021 10 N -0.328 5.328 11 C -0.049 4.049 12 C 0.106 3.894 13 C -0.237 4.237 14 C -0.104 4.104 15 C -0.211 4.211 16 C -0.097 4.097 17 C -0.229 4.229 18 C -0.009 4.009 19 C -0.186 4.186 20 C 0.074 3.926 21 H 0.068 0.932 22 N -0.390 5.390 23 C -0.346 4.346 24 H 0.082 0.918 25 C -0.253 4.253 26 N -0.635 5.635 27 Si 0.772 3.228 28 H -0.208 1.208 29 H -0.227 1.227 30 H -0.183 1.183 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.132 0.868 39 H 0.156 0.844 40 H 0.052 0.948 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.131 0.869 44 H 0.146 0.854 45 H 0.152 0.848 46 H 0.161 0.839 47 H 0.154 0.846 48 H 0.105 0.895 49 H 0.130 0.870 50 H 0.072 0.928 51 H 0.085 0.915 52 H 0.194 0.806 53 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -14.239 20.067 -12.197 27.463 hybrid contribution -0.145 -0.944 1.482 1.763 sum -14.384 19.123 -10.715 26.218 Atomic orbital electron populations 1.21787 0.94919 1.01991 1.01720 1.21421 0.96049 0.95282 1.02268 1.21674 0.95521 0.96546 0.97802 0.92466 1.21559 0.99118 0.82313 0.96686 1.48320 1.08975 1.06340 1.70414 1.22048 0.87031 0.87690 0.75563 1.90668 1.16666 1.86930 1.51132 1.21533 0.90758 0.83490 1.06343 1.46130 1.40976 1.40945 1.04711 1.21780 1.01614 1.00774 0.80763 1.18017 0.91795 0.92000 0.87581 1.20797 1.05654 1.05374 0.91847 1.21139 0.95189 0.95374 0.98731 1.21188 1.01024 1.01206 0.97642 1.21215 0.98099 0.98300 0.92104 1.20928 1.00114 1.01278 1.00540 1.22028 0.78503 1.02914 0.97488 1.22537 1.01483 0.97225 0.97340 1.20399 0.92314 0.91525 0.88324 0.93224 1.42813 1.14973 1.66574 1.14642 1.19002 0.91423 1.25154 0.99006 0.91837 1.25346 0.98066 1.01236 1.00636 1.69855 1.21551 1.43778 1.28293 0.85577 0.78965 0.78495 0.79723 1.20840 1.22650 1.18292 0.91968 0.93426 0.92067 0.91540 0.93077 0.90012 0.90374 0.86776 0.84355 0.94757 0.89839 0.89279 0.86885 0.85376 0.84812 0.83929 0.84649 0.89458 0.87038 0.92842 0.91466 0.80623 0.93572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.67 71.98 0.70 -2.93 16 2 C -0.11 -3.27 5.31 30.59 0.16 -3.10 16 3 C -0.10 -2.79 1.92 -10.71 -0.02 -2.81 16 4 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 5 C 0.13 3.23 5.32 86.36 0.46 3.69 16 6 N -0.61 -13.98 2.97 -818.06 -2.43 -16.41 16 7 C 0.49 11.92 7.77 87.66 0.68 12.60 16 8 O -0.57 -18.87 15.84 -3.04 -0.05 -18.92 16 9 C 0.11 1.81 4.02 85.64 0.34 2.15 16 10 N -0.62 -11.99 2.50 -726.56 -1.81 -13.81 16 11 C 0.09 1.33 10.23 127.77 1.31 2.64 16 12 C 0.21 4.70 6.55 38.21 0.25 4.95 16 13 C -0.21 -5.10 9.21 22.40 0.21 -4.89 16 14 C -0.09 -1.87 10.04 22.25 0.22 -1.65 16 15 C -0.19 -3.69 10.04 22.29 0.22 -3.47 16 16 C -0.08 -1.44 10.04 22.25 0.22 -1.21 16 17 C -0.21 -4.13 9.21 22.40 0.21 -3.92 16 18 C 0.11 2.21 6.37 86.51 0.55 2.76 16 19 C -0.15 -4.14 5.67 30.82 0.17 -3.97 16 20 C 0.18 6.19 2.19 45.02 0.10 6.29 16 21 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 22 N -0.75 -32.70 4.14 -322.80 -1.34 -34.04 16 23 C -0.21 -11.55 10.41 84.04 0.87 -10.68 16 24 H 0.06 3.71 8.06 -2.91 -0.02 3.69 16 25 C -0.06 -3.53 5.50 84.86 0.47 -3.06 16 26 N -0.98 -61.76 13.97 21.65 0.30 -61.46 16 27 Si 0.94 45.21 27.73 68.60 1.90 47.11 16 28 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 29 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 30 H -0.26 -11.34 6.52 99.48 0.65 -10.69 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.06 1.40 6.70 -2.39 -0.02 1.39 16 34 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.05 1.75 7.22 -2.39 -0.02 1.74 16 36 H 0.08 2.29 5.72 -2.38 -0.01 2.27 16 37 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.11 1.77 5.78 -2.39 -0.01 1.76 16 39 H 0.14 1.39 7.67 -2.39 -0.02 1.37 16 40 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.08 0.94 6.20 -2.39 -0.01 0.93 16 42 H 0.09 0.83 7.89 -2.39 -0.02 0.81 16 43 H 0.11 2.64 6.15 -2.91 -0.02 2.62 16 44 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 45 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 46 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 47 H 0.14 2.16 6.14 -2.91 -0.02 2.14 16 48 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 49 H 0.11 1.45 5.94 -2.38 -0.01 1.43 16 50 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 51 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 52 H 0.36 15.81 5.37 -92.71 -0.50 15.31 16 53 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -73.69 410.04 4.05 -69.64 By element: Atomic # 1 Polarization: 34.16 SS G_CDS: 0.34 Total: 34.51 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: 7.13 Total: -6.63 kcal Atomic # 7 Polarization: -120.44 SS G_CDS: -5.27 Total: -125.71 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.05 Total: -18.92 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.90 Total: 47.11 kcal Total: -73.69 4.05 -69.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037975535.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.154 kcal (2) G-P(sol) polarization free energy of solvation -73.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds