Wall clock time and date at job start Wed Apr 1 2020 04:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47065 * 2 1 4 4 H 1.09004 * 109.49907 * 304.93219 * 3 2 1 5 5 C 1.53194 * 109.49745 * 64.99954 * 3 2 1 6 6 N 1.46932 * 108.77390 * 174.58462 * 5 3 2 7 7 C 1.34777 * 120.63175 * 126.36508 * 6 5 3 8 8 O 1.21598 * 119.99610 * 4.23894 * 7 6 5 9 9 C 1.47434 * 120.00262 * 184.23333 * 7 6 5 10 10 C 1.39738 * 120.20562 * 305.86056 * 9 7 6 11 11 C 1.37743 * 119.92266 * 179.97438 * 10 9 7 12 12 C 1.38616 * 120.35640 * 0.02562 * 11 10 9 13 13 C 1.37949 * 120.41921 * 359.97438 * 12 11 10 14 14 C 1.38961 * 120.06888 * 0.02562 * 13 12 11 15 15 N 1.38867 * 120.17827 * 180.27819 * 14 13 12 16 16 C 1.46906 * 111.00033 * 299.71927 * 15 14 13 17 17 C 1.46901 * 111.00337 * 63.67502 * 15 14 13 18 18 C 1.46927 * 118.73952 * 306.64211 * 6 5 3 19 19 C 1.52766 * 109.00918 * 53.30781 * 18 6 5 20 20 C 1.53042 * 109.38155 * 305.59089 * 19 18 6 21 21 H 1.08999 * 109.45816 * 181.25551 * 20 19 18 22 22 N 1.46500 * 109.46163 * 301.21628 * 20 19 18 23 23 C 1.36933 * 120.00195 * 275.07319 * 22 20 19 24 24 H 1.08003 * 119.99828 * 359.97438 * 23 22 20 25 25 C 1.38805 * 120.00230 * 179.97438 * 23 22 20 26 26 N 1.31626 * 120.00343 * 179.97438 * 25 23 22 27 27 Si 1.86805 * 119.99971 * 359.97438 * 25 23 22 28 28 H 1.48499 * 109.46906 * 90.00260 * 27 25 23 29 29 H 1.48502 * 109.47221 * 209.99899 * 27 25 23 30 30 H 1.48493 * 109.47206 * 330.00133 * 27 25 23 31 31 H 1.08995 * 109.47098 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47149 * 300.00352 * 1 2 3 33 33 H 1.09002 * 109.46891 * 59.99950 * 1 2 3 34 34 H 1.08998 * 109.47149 * 239.99648 * 2 1 3 35 35 H 1.08997 * 109.46672 * 119.99631 * 2 1 3 36 36 H 1.08996 * 109.59135 * 54.79712 * 5 3 2 37 37 H 1.08994 * 109.70543 * 294.43699 * 5 3 2 38 38 H 1.08000 * 120.03317 * 359.97438 * 10 9 7 39 39 H 1.08001 * 119.82051 * 180.02562 * 11 10 9 40 40 H 1.07999 * 119.78927 * 179.97438 * 12 11 10 41 41 H 1.08001 * 119.96787 * 180.02562 * 13 12 11 42 42 H 1.09001 * 109.46870 * 63.95596 * 16 15 14 43 43 H 1.08997 * 109.47531 * 183.95152 * 16 15 14 44 44 H 1.09001 * 109.47257 * 303.95846 * 16 15 14 45 45 H 1.08991 * 109.46724 * 56.04820 * 17 15 14 46 46 H 1.09001 * 109.46836 * 176.05082 * 17 15 14 47 47 H 1.09002 * 109.46719 * 296.04685 * 17 15 14 48 48 H 1.08991 * 109.58743 * 173.14330 * 18 6 5 49 49 H 1.08999 * 109.58279 * 293.57215 * 18 6 5 50 50 H 1.08993 * 109.56456 * 185.55498 * 19 18 6 51 51 H 1.08996 * 109.35678 * 65.49810 * 19 18 6 52 52 H 0.96999 * 120.00031 * 95.06571 * 22 20 19 53 53 H 0.97001 * 120.00114 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6066 1.9816 -0.8424 5 6 1.6350 2.1280 1.3088 6 7 2.2416 3.4657 1.3493 7 6 1.4816 4.5581 1.5627 8 8 0.2953 4.4364 1.8005 9 6 2.0885 5.9006 1.5080 10 6 3.2037 6.2005 2.2949 11 6 3.7664 7.4565 2.2388 12 6 3.2321 8.4269 1.4056 13 6 2.1315 8.1465 0.6226 14 6 1.5499 6.8852 0.6654 15 7 0.4454 6.5986 -0.1261 16 6 -0.6801 7.4847 0.1999 17 6 0.7844 6.6815 -1.5530 18 6 3.6914 3.5904 1.1467 19 6 4.0742 2.8879 -0.1547 20 6 3.5656 1.4449 -0.1216 21 1 3.8574 0.9358 -1.0402 22 7 4.1480 0.7484 1.0282 23 6 5.3860 0.1726 0.9248 24 1 5.9330 0.2315 -0.0046 25 6 5.9380 -0.4868 2.0143 26 7 7.1279 -1.0408 1.9148 27 14 4.9922 -0.5882 3.6221 28 1 4.1495 -1.8109 3.6243 29 1 5.9489 -0.6443 4.7565 30 1 4.1265 0.6100 3.7634 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.9906 1.5398 2.1547 37 1 0.5498 2.2173 1.3564 38 1 3.6238 5.4484 2.9462 39 1 4.6285 7.6864 2.8473 40 1 3.6804 9.4088 1.3691 41 1 1.7215 8.9079 -0.0243 42 1 -0.4120 8.5145 -0.0364 43 1 -1.5530 7.1934 -0.3842 44 1 -0.9103 7.4038 1.2623 45 1 1.6205 6.0157 -1.7670 46 1 -0.0784 6.3846 -2.1492 47 1 1.0627 7.7057 -1.8014 48 1 3.9624 4.6443 1.0848 49 1 4.2181 3.1238 1.9791 50 1 5.1586 2.8890 -0.2648 51 1 3.6221 3.4137 -0.9956 52 1 3.6566 0.6952 1.8629 53 1 7.5135 -1.5019 2.6761 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037989805.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:50 Heat of formation + Delta-G solvation = 3.280067 kcal Electronic energy + Delta-G solvation = -32474.851977 eV Core-core repulsion = 28539.292005 eV Total energy + Delta-G solvation = -3935.559973 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.84280 -40.49588 -38.95187 -37.57221 -35.90153 -35.40461 -33.56193 -32.39479 -31.48557 -30.91787 -29.95200 -28.53713 -26.94723 -25.63427 -25.18607 -25.02576 -24.08393 -22.16586 -22.13271 -20.97185 -19.92004 -19.72864 -18.38851 -17.75649 -17.28346 -16.87327 -16.59981 -16.17368 -16.02996 -15.91813 -15.73749 -15.43043 -15.20888 -14.96280 -14.88618 -14.70581 -14.39706 -14.26428 -14.18412 -13.79203 -13.55101 -13.28612 -13.23893 -13.15045 -12.97012 -12.91083 -12.77201 -12.68696 -12.65277 -12.45732 -12.21758 -12.12134 -12.03149 -11.85863 -11.60588 -11.52733 -11.17176 -10.97001 -10.81745 -9.90152 -9.74590 -9.58782 -9.43309 -9.22024 -7.97537 -5.28081 0.01543 0.26542 1.36708 1.38194 1.44531 1.71950 2.03449 2.49436 2.69774 2.85103 3.34540 3.47672 3.60927 3.77086 3.89362 3.95244 3.99452 4.09679 4.15936 4.23756 4.27468 4.33616 4.35632 4.37022 4.42769 4.43592 4.54358 4.58120 4.59828 4.65593 4.66739 4.79847 4.84176 4.87612 4.93057 4.94914 4.96906 5.03359 5.13996 5.17705 5.22628 5.24111 5.30106 5.36381 5.38370 5.45657 5.48571 5.64975 5.76540 5.84920 5.93195 6.26551 6.34912 6.46411 7.13045 7.18622 7.89781 8.08555 9.24398 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.012515 B = 0.003839 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.846343 B = 7291.343252 C = 8416.969473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 C -0.092 4.092 4 H 0.086 0.914 5 C 0.123 3.877 6 N -0.601 5.601 7 C 0.570 3.430 8 O -0.564 6.564 9 C -0.128 4.128 10 C -0.096 4.096 11 C -0.123 4.123 12 C -0.084 4.084 13 C -0.155 4.155 14 C 0.123 3.877 15 N -0.533 5.533 16 C 0.039 3.961 17 C 0.033 3.967 18 C 0.115 3.885 19 C -0.140 4.140 20 C 0.179 3.821 21 H 0.051 0.949 22 N -0.741 5.741 23 C -0.211 4.211 24 H 0.063 0.937 25 C -0.056 4.056 26 N -0.983 5.983 27 Si 0.937 3.063 28 H -0.283 1.283 29 H -0.299 1.299 30 H -0.260 1.260 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.048 0.952 36 H 0.049 0.951 37 H 0.088 0.912 38 H 0.128 0.872 39 H 0.154 0.846 40 H 0.159 0.841 41 H 0.144 0.856 42 H 0.049 0.951 43 H 0.080 0.920 44 H 0.053 0.947 45 H 0.058 0.942 46 H 0.081 0.919 47 H 0.048 0.952 48 H 0.099 0.901 49 H 0.057 0.943 50 H 0.065 0.935 51 H 0.072 0.928 52 H 0.361 0.639 53 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.032 21.547 -5.101 25.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C -0.112 4.112 4 H 0.104 0.896 5 C 0.001 3.999 6 N -0.333 5.333 7 C 0.359 3.641 8 O -0.443 6.443 9 C -0.132 4.132 10 C -0.115 4.115 11 C -0.141 4.141 12 C -0.102 4.102 13 C -0.175 4.175 14 C 0.028 3.972 15 N -0.254 5.254 16 C -0.107 4.107 17 C -0.113 4.113 18 C -0.007 4.007 19 C -0.181 4.181 20 C 0.071 3.929 21 H 0.069 0.931 22 N -0.385 5.385 23 C -0.342 4.342 24 H 0.081 0.919 25 C -0.248 4.248 26 N -0.635 5.635 27 Si 0.766 3.234 28 H -0.209 1.209 29 H -0.226 1.226 30 H -0.185 1.185 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.106 0.894 38 H 0.146 0.854 39 H 0.172 0.828 40 H 0.176 0.824 41 H 0.162 0.838 42 H 0.067 0.933 43 H 0.098 0.902 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.100 0.900 47 H 0.067 0.933 48 H 0.117 0.883 49 H 0.075 0.925 50 H 0.084 0.916 51 H 0.090 0.910 52 H 0.195 0.805 53 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.656 20.915 -4.997 25.473 hybrid contribution 0.288 -0.111 1.103 1.145 sum -13.368 20.804 -3.895 25.034 Atomic orbital electron populations 1.21786 0.94613 1.02032 1.01945 1.21400 0.96255 0.94954 1.02136 1.21675 0.95338 0.96699 0.97484 0.89562 1.21555 0.98988 0.81921 0.97458 1.48087 1.08725 1.06184 1.70325 1.18398 0.85543 0.84555 0.75568 1.90703 1.16620 1.86986 1.49984 1.19864 0.98363 0.93484 1.01514 1.21417 0.93563 0.98556 0.97929 1.21426 1.00911 0.92072 0.99676 1.21551 0.94488 1.00437 0.93741 1.21823 0.97924 0.96244 1.01519 1.18756 0.92006 0.91957 0.94483 1.59130 1.05561 1.55528 1.05191 1.22355 0.92711 0.93989 1.01644 1.22445 1.02120 1.00977 0.85764 1.21736 0.78762 1.01791 0.98381 1.22272 1.01337 0.97512 0.96954 1.20392 0.91052 0.91201 0.90241 0.93085 1.42793 1.18208 1.65858 1.11619 1.19005 0.92982 1.24625 0.97615 0.91914 1.25241 0.97413 1.01284 1.00815 1.69851 1.18450 1.43545 1.31642 0.85690 0.78163 0.78467 0.81086 1.20918 1.22619 1.18486 0.91971 0.93101 0.91962 0.91594 0.93303 0.93299 0.89370 0.85382 0.82788 0.82376 0.83782 0.93303 0.90155 0.92844 0.92335 0.90031 0.93347 0.88283 0.92496 0.91596 0.90990 0.80464 0.93623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.67 71.98 0.70 -2.89 16 2 C -0.11 -3.24 5.19 30.59 0.16 -3.08 16 3 C -0.09 -2.81 2.14 -10.71 -0.02 -2.84 16 4 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 5 C 0.12 4.02 5.02 86.36 0.43 4.45 16 6 N -0.60 -19.19 2.98 -823.61 -2.45 -21.64 16 7 C 0.57 18.77 6.81 86.67 0.59 19.36 16 8 O -0.56 -21.91 16.12 -4.03 -0.06 -21.97 16 9 C -0.13 -3.46 4.89 -19.98 -0.10 -3.56 16 10 C -0.10 -2.15 7.42 22.52 0.17 -1.99 16 11 C -0.12 -2.01 10.02 22.24 0.22 -1.79 16 12 C -0.08 -1.17 10.03 22.29 0.22 -0.94 16 13 C -0.16 -2.59 8.63 22.37 0.19 -2.40 16 14 C 0.12 2.86 4.69 38.71 0.18 3.04 16 15 N -0.53 -12.26 4.08 -744.38 -3.03 -15.29 16 16 C 0.04 0.73 9.28 127.69 1.19 1.92 16 17 C 0.03 0.58 9.32 127.69 1.19 1.77 16 18 C 0.12 3.54 5.24 86.22 0.45 3.99 16 19 C -0.14 -4.44 5.76 30.53 0.18 -4.26 16 20 C 0.18 6.38 2.53 45.02 0.11 6.49 16 21 H 0.05 1.91 8.08 -2.39 -0.02 1.90 16 22 N -0.74 -32.31 3.53 -322.81 -1.14 -33.45 16 23 C -0.21 -11.35 10.41 84.03 0.87 -10.48 16 24 H 0.06 3.69 8.06 -2.91 -0.02 3.67 16 25 C -0.06 -3.22 5.50 84.86 0.47 -2.75 16 26 N -0.98 -61.73 13.97 21.65 0.30 -61.43 16 27 Si 0.94 45.28 27.73 68.60 1.90 47.18 16 28 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 29 H -0.30 -14.77 7.11 99.48 0.71 -14.07 16 30 H -0.26 -11.57 6.52 99.48 0.65 -10.92 16 31 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.05 1.27 6.70 -2.39 -0.02 1.26 16 33 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.05 1.65 7.69 -2.39 -0.02 1.63 16 36 H 0.05 1.73 6.64 -2.39 -0.02 1.71 16 37 H 0.09 2.92 5.75 -2.39 -0.01 2.90 16 38 H 0.13 2.92 7.37 -2.91 -0.02 2.89 16 39 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 40 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 41 H 0.14 1.75 7.06 -2.91 -0.02 1.73 16 42 H 0.05 0.67 7.26 -2.39 -0.02 0.66 16 43 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.05 1.18 8.12 -2.39 -0.02 1.16 16 45 H 0.06 1.15 8.12 -2.39 -0.02 1.14 16 46 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.05 0.65 7.45 -2.39 -0.02 0.63 16 48 H 0.10 2.64 4.74 -2.39 -0.01 2.62 16 49 H 0.06 2.00 7.74 -2.39 -0.02 1.98 16 50 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 51 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 52 H 0.36 15.80 3.80 -92.71 -0.35 15.44 16 53 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -70.87 405.86 3.20 -67.67 By element: Atomic # 1 Polarization: 34.41 SS G_CDS: 0.48 Total: 34.90 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 7.20 Total: 4.04 kcal Atomic # 7 Polarization: -125.49 SS G_CDS: -6.32 Total: -131.81 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.06 Total: -21.97 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.90 Total: 47.18 kcal Total: -70.87 3.20 -67.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037989805.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.947 kcal (2) G-P(sol) polarization free energy of solvation -70.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds