Wall clock time and date at job start Wed Apr 1 2020 04:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47366 * 2 1 4 4 H 1.08998 * 109.49695 * 55.06565 * 3 2 1 5 5 C 1.53196 * 109.49265 * 295.00231 * 3 2 1 6 6 N 1.46928 * 108.77113 * 185.41299 * 5 3 2 7 7 C 1.34776 * 120.63086 * 233.63176 * 6 5 3 8 8 O 1.21633 * 120.00042 * 356.28339 * 7 6 5 9 9 C 1.47260 * 120.00382 * 176.28487 * 7 6 5 10 10 C 1.46745 * 126.92111 * 42.07290 * 9 7 6 11 11 C 1.34064 * 106.31177 * 180.02562 * 10 9 7 12 12 N 1.37088 * 109.04208 * 0.03161 * 11 10 9 13 13 C 1.34576 * 109.94404 * 359.67422 * 12 11 10 14 14 C 1.47033 * 123.94973 * 179.91720 * 12 11 10 15 15 C 1.53137 * 108.84711 * 342.45716 * 14 12 11 16 16 C 1.53134 * 109.59245 * 51.19826 * 15 14 12 17 17 C 1.51090 * 126.73134 * 180.02562 * 11 10 9 18 18 C 1.46923 * 118.74146 * 53.60691 * 6 5 3 19 19 C 1.53193 * 108.77553 * 306.39554 * 18 6 5 20 20 C 1.53036 * 109.31728 * 54.63044 * 19 18 6 21 21 H 1.08999 * 109.46013 * 178.61752 * 20 19 18 22 22 N 1.46503 * 109.45995 * 58.65831 * 20 19 18 23 23 C 1.36931 * 120.00144 * 84.93161 * 22 20 19 24 24 H 1.08003 * 120.00211 * 359.97438 * 23 22 20 25 25 C 1.38813 * 120.00093 * 180.02562 * 23 22 20 26 26 N 1.31615 * 120.00041 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00097 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47054 * 60.00140 * 27 25 23 29 29 H 1.48497 * 109.47244 * 180.02562 * 27 25 23 30 30 H 1.48497 * 109.47448 * 300.00382 * 27 25 23 31 31 H 1.09003 * 109.47084 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.46971 * 59.99980 * 1 2 3 33 33 H 1.09004 * 109.46578 * 299.99984 * 1 2 3 34 34 H 1.09002 * 109.47121 * 119.99886 * 2 1 3 35 35 H 1.09000 * 109.46969 * 239.99706 * 2 1 3 36 36 H 1.08994 * 109.58526 * 305.19919 * 5 3 2 37 37 H 1.08994 * 109.58686 * 65.62520 * 5 3 2 38 38 H 1.08003 * 126.84717 * 0.02562 * 10 9 7 39 39 H 1.08005 * 125.72195 * 180.32854 * 13 12 11 40 40 H 1.09004 * 109.57422 * 222.64504 * 14 12 11 41 41 H 1.09001 * 109.67839 * 102.33140 * 14 12 11 42 42 H 1.09005 * 109.45014 * 291.16575 * 15 14 12 43 43 H 1.08992 * 109.43377 * 171.22686 * 15 14 12 44 44 H 1.08998 * 109.52266 * 169.94278 * 16 15 14 45 45 H 1.08994 * 109.57685 * 49.77768 * 16 15 14 46 46 H 1.08990 * 109.71921 * 283.88276 * 17 11 10 47 47 H 1.09002 * 109.71738 * 44.48862 * 17 11 10 48 48 H 1.09000 * 109.58432 * 66.17896 * 18 6 5 49 49 H 1.08994 * 109.58900 * 186.60371 * 18 6 5 50 50 H 1.08995 * 109.49832 * 174.58729 * 19 18 6 51 51 H 1.09007 * 109.49599 * 294.64525 * 19 18 6 52 52 H 0.97002 * 119.99537 * 264.93410 * 22 20 19 53 53 H 0.97002 * 120.00487 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6066 1.9816 0.8423 5 6 1.6350 2.1279 -1.3088 6 7 2.2415 3.4656 -1.3494 7 6 1.4815 4.5580 -1.5629 8 8 0.2930 4.4368 -1.7913 9 6 2.0900 5.8983 -1.5196 10 6 3.3816 6.2989 -2.0895 11 6 3.5273 7.6025 -1.8124 12 7 2.4291 8.0373 -1.1166 13 6 1.5629 7.0219 -0.9447 14 6 2.2496 9.4185 -0.6453 15 6 3.6077 10.1260 -0.6582 16 6 4.2680 9.9450 -2.0280 17 6 4.6972 8.4811 -2.1894 18 6 3.6922 3.5898 -1.1523 19 6 4.0741 2.8879 0.1547 20 6 3.5656 1.4449 0.1216 21 1 3.8574 0.9359 1.0402 22 7 4.1480 0.7484 -1.0281 23 6 5.3860 0.1726 -0.9246 24 1 5.9334 0.2322 0.0045 25 6 5.9381 -0.4870 -2.0142 26 7 5.2717 -0.5584 -3.1470 27 14 7.6273 -1.2718 -1.8732 28 1 7.6069 -2.3014 -0.8034 29 1 7.9871 -1.9077 -3.1660 30 1 8.6309 -0.2299 -1.5384 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3632 0.5139 0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.8933 -0.5139 -0.8900 36 1 1.9907 1.5396 -2.1546 37 1 0.5497 2.2173 -1.3538 38 1 4.0763 5.6691 -2.6254 39 1 0.6123 7.0832 -0.4357 40 1 1.8522 9.4093 0.3697 41 1 1.5578 9.9439 -1.3036 42 1 4.2478 9.6970 0.1128 43 1 3.4649 11.1885 -0.4616 44 1 5.1431 10.5910 -2.0987 45 1 3.5582 10.2059 -2.8129 46 1 5.5417 8.2705 -1.5333 47 1 4.9802 8.2924 -3.2250 48 1 4.2156 3.1208 -1.9854 49 1 3.9641 4.6437 -1.0941 50 1 5.1585 2.8891 0.2648 51 1 3.6225 3.4141 0.9957 52 1 3.6565 0.6951 -1.8627 53 1 5.6576 -1.0189 -3.9085 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037994126.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:47 Heat of formation + Delta-G solvation = -1.826548 kcal Electronic energy + Delta-G solvation = -31646.496954 eV Core-core repulsion = 27710.715542 eV Total energy + Delta-G solvation = -3935.781412 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.54437 -41.03669 -39.03922 -36.69985 -35.81181 -35.32516 -33.64953 -33.35910 -31.02941 -30.85799 -29.65140 -28.39138 -26.76743 -25.54184 -25.04873 -24.94067 -23.03893 -22.45367 -22.02138 -20.57186 -19.83439 -19.28017 -18.97655 -18.05838 -17.44810 -16.88046 -16.66239 -16.45270 -15.95324 -15.83718 -15.56452 -15.11735 -15.06256 -14.76350 -14.72490 -14.56459 -14.48533 -14.47450 -14.20794 -14.05057 -13.58362 -13.53467 -13.13905 -13.02321 -12.86203 -12.78812 -12.63557 -12.42632 -12.32434 -12.15229 -12.04239 -11.90461 -11.81743 -11.74875 -11.69811 -11.55069 -11.43112 -11.10985 -10.92787 -10.74124 -9.60865 -9.38395 -9.06582 -8.89012 -7.85744 -5.12305 0.92559 1.44076 1.50427 1.52227 1.58091 1.82830 2.16850 2.38577 2.61797 3.47320 3.64117 3.66054 3.79282 3.84472 3.87886 3.91168 4.03201 4.11548 4.14510 4.18172 4.36391 4.40635 4.42311 4.46519 4.48230 4.50922 4.54098 4.59189 4.63316 4.71863 4.86742 4.87697 4.92283 4.94079 4.97954 5.02204 5.08560 5.08987 5.14243 5.17724 5.20944 5.24559 5.30151 5.33761 5.34706 5.42728 5.53807 5.62230 5.71498 5.80734 6.13035 6.35290 6.38508 6.56659 7.25924 7.42539 8.19026 8.43390 9.37501 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.011030 B = 0.003234 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2537.886730 B = 8656.571037 C =10499.996880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.090 4.090 4 H 0.083 0.917 5 C 0.126 3.874 6 N -0.595 5.595 7 C 0.586 3.414 8 O -0.598 6.598 9 C -0.253 4.253 10 C -0.191 4.191 11 C 0.027 3.973 12 N -0.438 5.438 13 C 0.069 3.931 14 C 0.093 3.907 15 C -0.130 4.130 16 C -0.122 4.122 17 C -0.055 4.055 18 C 0.117 3.883 19 C -0.139 4.139 20 C 0.173 3.827 21 H 0.048 0.952 22 N -0.724 5.724 23 C -0.227 4.227 24 H 0.075 0.925 25 C -0.074 4.074 26 N -0.970 5.970 27 Si 0.965 3.035 28 H -0.282 1.282 29 H -0.302 1.302 30 H -0.279 1.279 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.043 0.957 36 H 0.044 0.956 37 H 0.083 0.917 38 H 0.139 0.861 39 H 0.184 0.816 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.071 0.929 43 H 0.112 0.888 44 H 0.094 0.906 45 H 0.065 0.935 46 H 0.090 0.910 47 H 0.088 0.912 48 H 0.045 0.955 49 H 0.109 0.891 50 H 0.065 0.935 51 H 0.069 0.931 52 H 0.373 0.627 53 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.695 24.264 8.284 26.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.110 4.110 4 H 0.101 0.899 5 C 0.003 3.997 6 N -0.325 5.325 7 C 0.377 3.623 8 O -0.481 6.481 9 C -0.263 4.263 10 C -0.214 4.214 11 C -0.082 4.082 12 N -0.113 5.113 13 C -0.067 4.067 14 C -0.026 4.026 15 C -0.167 4.167 16 C -0.160 4.160 17 C -0.093 4.093 18 C -0.005 4.005 19 C -0.180 4.180 20 C 0.065 3.935 21 H 0.066 0.934 22 N -0.365 5.365 23 C -0.359 4.359 24 H 0.093 0.907 25 C -0.266 4.266 26 N -0.621 5.621 27 Si 0.796 3.204 28 H -0.208 1.208 29 H -0.229 1.229 30 H -0.205 1.205 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.102 0.898 38 H 0.156 0.844 39 H 0.201 0.799 40 H 0.124 0.876 41 H 0.113 0.887 42 H 0.090 0.910 43 H 0.130 0.870 44 H 0.113 0.887 45 H 0.084 0.916 46 H 0.108 0.892 47 H 0.106 0.894 48 H 0.064 0.936 49 H 0.127 0.873 50 H 0.083 0.917 51 H 0.088 0.912 52 H 0.206 0.794 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.162 24.495 8.371 26.396 hybrid contribution 0.753 -1.361 -0.820 1.759 sum -4.410 23.133 7.551 24.731 Atomic orbital electron populations 1.21785 0.94717 1.01965 1.01838 1.21339 0.96111 0.95051 1.01779 1.21642 0.95862 0.96471 0.97010 0.89853 1.21495 0.98456 0.82059 0.97648 1.47973 1.08901 1.06015 1.69599 1.17930 0.84979 0.84402 0.74949 1.90683 1.17241 1.87613 1.52573 1.20181 0.99330 0.92814 1.13982 1.21703 0.96776 0.95129 1.07820 1.20684 0.92197 0.94050 1.01301 1.44149 1.14916 1.09829 1.42446 1.21661 0.96349 0.85747 1.02960 1.22449 1.00558 0.77588 1.02011 1.21874 0.94194 1.02405 0.98237 1.21649 1.01999 0.95099 0.97215 1.20519 0.92769 0.93195 1.02809 1.21893 0.78508 1.02323 0.97806 1.22378 1.01118 0.97767 0.96744 1.20433 0.91068 0.91337 0.90693 0.93412 1.42577 1.18270 1.64260 1.11382 1.19546 0.94297 1.25275 0.96828 0.90685 1.25407 1.01916 1.03255 0.96016 1.69813 1.39667 1.49833 1.02826 0.85325 0.80819 0.78398 0.75891 1.20807 1.22874 1.20494 0.92006 0.93385 0.91747 0.91748 0.93775 0.93765 0.89841 0.84372 0.79935 0.87600 0.88706 0.91007 0.86991 0.88749 0.91613 0.89210 0.89373 0.93643 0.87339 0.91664 0.91223 0.79416 0.94418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.09 9.67 71.98 0.70 -3.39 16 2 C -0.10 -3.54 5.19 30.60 0.16 -3.38 16 3 C -0.09 -3.12 2.14 -10.71 -0.02 -3.15 16 4 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 5 C 0.13 4.81 5.02 86.36 0.43 5.24 16 6 N -0.60 -22.15 2.97 -822.97 -2.45 -24.59 16 7 C 0.59 22.15 7.61 86.62 0.66 22.81 16 8 O -0.60 -25.87 16.52 -4.14 -0.07 -25.94 16 9 C -0.25 -7.88 5.47 -19.02 -0.10 -7.99 16 10 C -0.19 -5.31 8.55 23.54 0.20 -5.11 16 11 C 0.03 0.58 6.53 40.91 0.27 0.84 16 12 N -0.44 -8.30 3.11 -507.84 -1.58 -9.88 16 13 C 0.07 1.67 11.36 83.93 0.95 2.63 16 14 C 0.09 0.89 6.89 86.32 0.59 1.49 16 15 C -0.13 -0.86 5.91 30.69 0.18 -0.67 16 16 C -0.12 -1.05 5.96 30.78 0.18 -0.86 16 17 C -0.06 -0.78 6.26 30.11 0.19 -0.59 16 18 C 0.12 4.19 5.52 86.36 0.48 4.67 16 19 C -0.14 -4.87 5.78 30.67 0.18 -4.69 16 20 C 0.17 6.76 2.53 45.02 0.11 6.87 16 21 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 22 N -0.72 -35.21 3.72 -322.82 -1.20 -36.41 16 23 C -0.23 -12.23 9.93 84.03 0.83 -11.39 16 24 H 0.08 3.87 7.83 -2.91 -0.02 3.84 16 25 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 26 N -0.97 -59.30 13.06 21.65 0.28 -59.02 16 27 Si 0.97 46.01 29.55 68.60 2.03 48.04 16 28 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 29 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 30 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 31 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.05 1.40 6.70 -2.39 -0.02 1.39 16 33 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.04 1.78 7.69 -2.39 -0.02 1.76 16 36 H 0.04 1.93 6.64 -2.39 -0.02 1.91 16 37 H 0.08 3.19 5.74 -2.39 -0.01 3.18 16 38 H 0.14 4.00 7.20 -2.91 -0.02 3.98 16 39 H 0.18 3.75 8.06 -2.91 -0.02 3.72 16 40 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 41 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.07 0.58 8.11 -2.38 -0.02 0.56 16 43 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 44 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.07 0.62 8.12 -2.39 -0.02 0.60 16 46 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.05 1.94 7.74 -2.39 -0.02 1.92 16 49 H 0.11 3.48 4.07 -2.39 -0.01 3.47 16 50 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 51 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 52 H 0.37 19.95 5.94 -92.71 -0.55 19.40 16 53 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -72.10 403.98 3.82 -68.27 By element: Atomic # 1 Polarization: 39.57 SS G_CDS: 0.35 Total: 39.92 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 6.46 Total: -0.40 kcal Atomic # 7 Polarization: -124.96 SS G_CDS: -4.94 Total: -129.90 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.07 Total: -25.94 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -72.10 3.82 -68.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037994126.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.446 kcal (2) G-P(sol) polarization free energy of solvation -72.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds