Wall clock time and date at job start Wed Apr 1 2020 04:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46998 * 2 1 4 4 H 1.08995 * 109.49849 * 55.06059 * 3 2 1 5 5 C 1.53194 * 109.49271 * 294.99823 * 3 2 1 6 6 N 1.46929 * 108.77014 * 185.38461 * 5 3 2 7 7 C 1.34784 * 120.62916 * 233.58522 * 6 5 3 8 8 O 1.21636 * 119.99581 * 5.98150 * 7 6 5 9 9 C 1.47260 * 120.00140 * 185.98001 * 7 6 5 10 10 C 1.46739 * 126.92280 * 31.89228 * 9 7 6 11 11 C 1.34061 * 106.31407 * 179.97438 * 10 9 7 12 12 N 1.37082 * 109.04117 * 0.03041 * 11 10 9 13 13 C 1.34578 * 109.94863 * 359.94472 * 12 11 10 14 14 C 1.47034 * 123.95546 * 179.97438 * 12 11 10 15 15 C 1.53138 * 108.84071 * 342.46957 * 14 12 11 16 16 C 1.53096 * 109.60596 * 51.18554 * 15 14 12 17 17 C 1.51095 * 126.73165 * 180.08581 * 11 10 9 18 18 C 1.46924 * 118.74361 * 53.85923 * 6 5 3 19 19 C 1.53617 * 108.54067 * 306.09580 * 18 6 5 20 20 C 1.53034 * 109.52296 * 175.14599 * 3 2 1 21 21 H 1.09004 * 109.46417 * 61.31164 * 20 3 2 22 22 N 1.46506 * 109.46136 * 301.33822 * 20 3 2 23 23 C 1.36937 * 120.00334 * 155.00160 * 22 20 3 24 24 H 1.08007 * 119.99770 * 359.97438 * 23 22 20 25 25 C 1.38807 * 119.99839 * 179.97438 * 23 22 20 26 26 N 1.31610 * 120.00348 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 119.99550 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.47096 * 90.00325 * 27 25 23 29 29 H 1.48504 * 109.46889 * 209.99828 * 27 25 23 30 30 H 1.48496 * 109.47442 * 330.00058 * 27 25 23 31 31 H 1.08999 * 109.47162 * 300.00453 * 1 2 3 32 32 H 1.09005 * 109.46759 * 60.00373 * 1 2 3 33 33 H 1.08998 * 109.46760 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.47140 * 240.00070 * 2 1 3 35 35 H 1.08999 * 109.47104 * 119.99930 * 2 1 3 36 36 H 1.08997 * 109.58751 * 65.59890 * 5 3 2 37 37 H 1.09001 * 109.58919 * 305.16576 * 5 3 2 38 38 H 1.08004 * 126.84460 * 359.97438 * 10 9 7 39 39 H 1.08004 * 125.73161 * 180.02562 * 13 12 11 40 40 H 1.09004 * 109.57440 * 102.27781 * 14 12 11 41 41 H 1.09004 * 109.57684 * 222.66271 * 14 12 11 42 42 H 1.08999 * 109.45351 * 171.24026 * 15 14 12 43 43 H 1.09005 * 109.44884 * 291.16233 * 15 14 12 44 44 H 1.09005 * 109.53088 * 169.94726 * 16 15 14 45 45 H 1.09002 * 109.56616 * 49.78798 * 16 15 14 46 46 H 1.08997 * 109.71940 * 283.87751 * 17 11 10 47 47 H 1.08997 * 109.71487 * 44.53301 * 17 11 10 48 48 H 1.09003 * 109.58128 * 65.92711 * 18 6 5 49 49 H 1.08994 * 109.59159 * 186.35139 * 18 6 5 50 50 H 1.09000 * 109.63754 * 294.86174 * 19 18 6 51 51 H 1.09003 * 109.43549 * 174.72410 * 19 18 6 52 52 H 0.97003 * 119.99315 * 335.00153 * 22 20 3 53 53 H 0.97002 * 120.00354 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6065 1.9817 0.8423 5 6 1.6351 2.1279 -1.3088 6 7 2.2409 3.4659 -1.3491 7 6 1.4805 4.5579 -1.5636 8 8 0.2698 4.4548 -1.6176 9 6 2.1156 5.8758 -1.7325 10 6 3.4280 6.1521 -2.3279 11 6 3.5938 7.4813 -2.2736 12 7 2.4889 8.0464 -1.6916 13 6 1.6007 7.0890 -1.3666 14 6 2.3260 9.4906 -1.4688 15 6 3.6979 10.1640 -1.5676 16 6 4.3858 9.7400 -2.8679 17 6 4.7895 8.2635 -2.7649 18 6 3.6923 3.5903 -1.1571 19 6 4.0733 2.8891 0.1554 20 6 3.5655 1.4457 0.1220 21 1 3.9994 0.9279 -0.7334 22 7 3.9578 0.7619 1.3569 23 6 5.1964 0.1866 1.4573 24 1 5.8841 0.2367 0.6259 25 6 5.5682 -0.4608 2.6274 26 7 4.7305 -0.5214 3.6407 27 14 7.2576 -1.2461 2.7640 28 1 8.2231 -0.2533 3.3002 29 1 7.1883 -2.4134 3.6794 30 1 7.7045 -1.6959 1.4212 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 0.5497 2.2168 -1.3542 37 1 1.9913 1.5400 -2.1547 38 1 4.1220 5.4287 -2.7299 39 1 0.6424 7.2512 -0.8955 40 1 1.6607 9.9043 -2.2267 41 1 1.9055 9.6622 -0.4779 42 1 3.5722 11.2467 -1.5596 43 1 4.3115 9.8639 -0.7181 44 1 5.2751 10.3504 -3.0255 45 1 3.6996 9.8734 -3.7042 46 1 5.6147 8.1547 -2.0612 47 1 5.0911 7.8966 -3.7459 48 1 4.2128 3.1191 -1.9909 49 1 3.9646 4.6443 -1.1024 50 1 3.6207 3.4145 0.9963 51 1 5.1577 2.8907 0.2660 52 1 3.3400 0.7166 2.1034 53 1 4.9901 -0.9742 4.4583 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037994127.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:52 Heat of formation + Delta-G solvation = -5.073276 kcal Electronic energy + Delta-G solvation = -31165.099086 eV Core-core repulsion = 27229.176886 eV Total energy + Delta-G solvation = -3935.922201 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.54239 -40.96029 -38.96655 -36.70178 -36.12953 -35.29788 -33.64588 -33.40659 -31.04322 -30.94724 -29.67746 -28.37803 -26.85297 -25.47838 -24.96996 -24.51111 -22.85783 -22.42144 -22.06769 -21.06190 -20.20409 -19.15688 -18.96058 -18.05455 -17.45616 -16.90910 -16.70891 -16.54033 -15.96843 -15.59670 -15.51641 -15.14423 -15.07076 -14.76363 -14.68794 -14.61415 -14.49778 -14.43670 -14.29485 -13.90179 -13.66395 -13.47616 -13.21759 -12.99336 -12.94495 -12.81641 -12.58191 -12.51751 -12.37616 -12.16159 -12.03374 -11.91600 -11.83017 -11.75029 -11.69629 -11.55248 -11.49591 -11.07776 -10.95801 -10.74966 -9.66345 -9.40244 -9.06188 -8.92898 -7.88888 -5.16541 0.86181 1.46244 1.49300 1.50469 1.58746 1.82316 2.18323 2.46607 2.59951 3.44106 3.62815 3.65875 3.78825 3.80532 3.84261 3.89830 3.99785 4.11136 4.14445 4.18847 4.32005 4.36089 4.40262 4.45307 4.48893 4.49624 4.54743 4.60203 4.66909 4.77944 4.82129 4.86429 4.87736 4.92091 4.94644 4.98386 5.02867 5.08829 5.09310 5.13285 5.17726 5.22633 5.32728 5.34805 5.40010 5.50451 5.54238 5.60183 5.71048 5.83001 6.13504 6.32105 6.36759 6.53976 7.26971 7.38474 8.14390 8.38677 9.34842 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.011723 B = 0.002808 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.953769 B = 9968.539862 C =11710.188909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 C -0.091 4.091 4 H 0.047 0.953 5 C 0.126 3.874 6 N -0.602 5.602 7 C 0.587 3.413 8 O -0.598 6.598 9 C -0.256 4.256 10 C -0.183 4.183 11 C 0.021 3.979 12 N -0.439 5.439 13 C 0.064 3.936 14 C 0.092 3.908 15 C -0.131 4.131 16 C -0.123 4.123 17 C -0.054 4.054 18 C 0.110 3.890 19 C -0.139 4.139 20 C 0.180 3.820 21 H 0.049 0.951 22 N -0.731 5.731 23 C -0.228 4.228 24 H 0.078 0.922 25 C -0.078 4.078 26 N -0.972 5.972 27 Si 0.969 3.031 28 H -0.289 1.289 29 H -0.300 1.300 30 H -0.268 1.268 31 H 0.043 0.957 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.047 0.953 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.157 0.843 39 H 0.176 0.824 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.110 0.890 43 H 0.068 0.932 44 H 0.094 0.906 45 H 0.067 0.933 46 H 0.089 0.911 47 H 0.095 0.905 48 H 0.083 0.917 49 H 0.111 0.889 50 H 0.037 0.963 51 H 0.066 0.934 52 H 0.369 0.631 53 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.158 23.538 -16.023 28.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.144 4.144 3 C -0.111 4.111 4 H 0.065 0.935 5 C 0.003 3.997 6 N -0.332 5.332 7 C 0.379 3.621 8 O -0.481 6.481 9 C -0.266 4.266 10 C -0.206 4.206 11 C -0.088 4.088 12 N -0.115 5.115 13 C -0.072 4.072 14 C -0.027 4.027 15 C -0.169 4.169 16 C -0.160 4.160 17 C -0.091 4.091 18 C -0.013 4.013 19 C -0.180 4.180 20 C 0.072 3.928 21 H 0.067 0.933 22 N -0.370 5.370 23 C -0.360 4.360 24 H 0.096 0.904 25 C -0.270 4.270 26 N -0.623 5.623 27 Si 0.798 3.202 28 H -0.217 1.217 29 H -0.227 1.227 30 H -0.193 1.193 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.174 0.826 39 H 0.193 0.807 40 H 0.114 0.886 41 H 0.118 0.882 42 H 0.128 0.872 43 H 0.087 0.913 44 H 0.112 0.888 45 H 0.085 0.915 46 H 0.107 0.893 47 H 0.114 0.886 48 H 0.101 0.899 49 H 0.128 0.872 50 H 0.056 0.944 51 H 0.085 0.915 52 H 0.201 0.799 53 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.618 23.783 -16.064 28.819 hybrid contribution 0.368 -1.041 1.198 1.630 sum -2.250 22.742 -14.866 27.262 Atomic orbital electron populations 1.21776 0.94935 1.01914 1.01625 1.21353 0.96029 0.95057 1.01985 1.21610 0.95880 0.96461 0.97183 0.93484 1.21629 0.99239 0.81892 0.96892 1.47983 1.08978 1.06180 1.70099 1.17890 0.85406 0.84100 0.74722 1.90694 1.15532 1.86907 1.54968 1.20235 0.99149 0.91692 1.15504 1.21862 0.96012 0.94996 1.07722 1.20818 0.91739 0.92579 1.03648 1.44179 1.14112 1.07648 1.45541 1.21703 0.96091 0.86766 1.02627 1.22432 1.00642 0.75509 1.04123 1.21872 0.93864 1.02117 0.98999 1.21647 1.01936 0.95038 0.97393 1.20524 0.92237 0.94064 1.02312 1.22283 0.78806 1.03204 0.96971 1.22538 1.01039 0.97680 0.96769 1.20404 0.92275 0.91153 0.88977 0.93308 1.42598 1.15497 1.64999 1.13875 1.19606 0.92492 1.25589 0.98350 0.90416 1.25497 1.01660 1.03306 0.96527 1.69827 1.37130 1.50227 1.05154 0.85201 0.80121 0.77366 0.77471 1.21666 1.22746 1.19264 0.93762 0.91843 0.91912 0.91550 0.93412 0.89750 0.90079 0.82569 0.80705 0.88601 0.88187 0.87208 0.91277 0.88787 0.91461 0.89294 0.88626 0.89905 0.87153 0.94433 0.91537 0.79890 0.94327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.26 9.67 71.98 0.70 -3.56 16 2 C -0.11 -3.67 5.31 30.60 0.16 -3.50 16 3 C -0.09 -3.25 1.92 -10.72 -0.02 -3.27 16 4 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 5 C 0.13 3.99 5.33 86.36 0.46 4.45 16 6 N -0.60 -18.96 2.97 -822.11 -2.44 -21.40 16 7 C 0.59 19.88 7.63 86.61 0.66 20.54 16 8 O -0.60 -23.91 16.46 -4.14 -0.07 -23.98 16 9 C -0.26 -7.15 5.57 -19.02 -0.11 -7.25 16 10 C -0.18 -4.11 8.53 23.54 0.20 -3.91 16 11 C 0.02 0.38 6.53 40.91 0.27 0.65 16 12 N -0.44 -7.80 3.11 -507.83 -1.58 -9.38 16 13 C 0.06 1.52 11.31 83.93 0.95 2.47 16 14 C 0.09 0.87 6.89 86.32 0.59 1.47 16 15 C -0.13 -0.81 5.91 30.67 0.18 -0.63 16 16 C -0.12 -0.82 5.96 30.77 0.18 -0.64 16 17 C -0.05 -0.58 6.26 30.11 0.19 -0.39 16 18 C 0.11 3.10 5.37 86.51 0.46 3.56 16 19 C -0.14 -4.98 5.67 30.82 0.17 -4.80 16 20 C 0.18 7.15 2.19 45.02 0.10 7.25 16 21 H 0.05 1.93 8.08 -2.38 -0.02 1.91 16 22 N -0.73 -36.73 4.33 -322.80 -1.40 -38.13 16 23 C -0.23 -12.48 9.93 84.03 0.83 -11.65 16 24 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 25 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 26 N -0.97 -60.08 13.06 21.65 0.28 -59.80 16 27 Si 0.97 46.16 29.55 68.60 2.03 48.19 16 28 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 29 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 30 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 31 H 0.04 1.34 8.14 -2.39 -0.02 1.33 16 32 H 0.06 1.69 6.70 -2.38 -0.02 1.68 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.05 1.99 7.22 -2.39 -0.02 1.98 16 36 H 0.08 2.80 5.71 -2.39 -0.01 2.79 16 37 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.16 3.09 6.86 -2.91 -0.02 3.07 16 39 H 0.18 3.74 8.06 -2.91 -0.02 3.72 16 40 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 41 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 43 H 0.07 0.56 8.11 -2.38 -0.02 0.54 16 44 H 0.09 0.33 8.14 -2.38 -0.02 0.32 16 45 H 0.07 0.49 8.12 -2.39 -0.02 0.47 16 46 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 49 H 0.11 2.85 4.28 -2.39 -0.01 2.84 16 50 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 51 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 52 H 0.37 20.49 7.51 -92.71 -0.70 19.79 16 53 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -73.57 407.06 3.48 -70.08 By element: Atomic # 1 Polarization: 37.45 SS G_CDS: 0.20 Total: 37.65 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: 6.46 Total: -3.24 kcal Atomic # 7 Polarization: -123.57 SS G_CDS: -5.13 Total: -128.70 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.07 Total: -23.98 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -73.57 3.48 -70.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037994127.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.009 kcal (2) G-P(sol) polarization free energy of solvation -73.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds