Wall clock time and date at job start Wed Apr 1 2020 04:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46807 * 2 1 4 4 H 1.08998 * 109.50039 * 305.05724 * 3 2 1 5 5 C 1.53624 * 109.43628 * 65.28595 * 3 2 1 6 6 N 1.46924 * 108.54709 * 174.72345 * 5 3 2 7 7 C 1.34776 * 120.63218 * 126.37065 * 6 5 3 8 8 O 1.21628 * 119.99763 * 3.42740 * 7 6 5 9 9 C 1.47265 * 120.00101 * 183.44047 * 7 6 5 10 10 C 1.46741 * 126.92003 * 317.91896 * 9 7 6 11 11 C 1.34068 * 106.31240 * 179.97438 * 10 9 7 12 12 N 1.37083 * 109.03857 * 0.03367 * 11 10 9 13 13 C 1.34577 * 109.95104 * 359.95071 * 12 11 10 14 14 C 1.47032 * 123.95311 * 179.97438 * 12 11 10 15 15 C 1.53139 * 108.84469 * 342.47784 * 14 12 11 16 16 C 1.53133 * 109.59913 * 51.18254 * 15 14 12 17 17 C 1.51083 * 126.73147 * 180.09345 * 11 10 9 18 18 C 1.46932 * 118.73676 * 306.09913 * 6 5 3 19 19 C 1.53182 * 108.77934 * 53.85543 * 18 6 5 20 20 C 1.53037 * 109.31608 * 305.36689 * 19 18 6 21 21 H 1.09001 * 109.46468 * 181.36908 * 20 19 18 22 22 N 1.46500 * 109.46169 * 301.34670 * 20 19 18 23 23 C 1.36937 * 119.99778 * 274.99918 * 22 20 19 24 24 H 1.08004 * 120.00101 * 359.97438 * 23 22 20 25 25 C 1.38815 * 120.00463 * 179.97438 * 23 22 20 26 26 N 1.31622 * 119.99176 * 0.02562 * 25 23 22 27 27 Si 1.86793 * 120.00308 * 179.97438 * 25 23 22 28 28 H 1.48493 * 109.47288 * 0.02562 * 27 25 23 29 29 H 1.48502 * 109.47003 * 120.00193 * 27 25 23 30 30 H 1.48495 * 109.47320 * 240.00130 * 27 25 23 31 31 H 1.09001 * 109.47348 * 60.00329 * 1 2 3 32 32 H 1.09005 * 109.47134 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47479 * 300.00271 * 1 2 3 34 34 H 1.08998 * 109.47479 * 239.99729 * 2 1 3 35 35 H 1.09003 * 109.46951 * 119.99313 * 2 1 3 36 36 H 1.09005 * 109.73669 * 54.98675 * 5 3 2 37 37 H 1.08996 * 109.66123 * 294.42126 * 5 3 2 38 38 H 1.07997 * 126.84910 * 359.97438 * 10 9 7 39 39 H 1.08002 * 125.72966 * 180.02562 * 13 12 11 40 40 H 1.09000 * 109.57845 * 222.66600 * 14 12 11 41 41 H 1.09003 * 109.68488 * 102.34908 * 14 12 11 42 42 H 1.09000 * 109.44884 * 291.14497 * 15 14 12 43 43 H 1.08998 * 109.42732 * 171.20334 * 15 14 12 44 44 H 1.09006 * 109.52293 * 49.73610 * 16 15 14 45 45 H 1.08997 * 109.52800 * 169.93926 * 16 15 14 46 46 H 1.08999 * 109.71855 * 44.49764 * 17 11 10 47 47 H 1.09000 * 109.72064 * 283.84650 * 17 11 10 48 48 H 1.09000 * 109.58631 * 173.64654 * 18 6 5 49 49 H 1.09001 * 109.58155 * 294.06494 * 18 6 5 50 50 H 1.09010 * 109.49775 * 65.31502 * 19 18 6 51 51 H 1.08999 * 109.49989 * 185.37879 * 19 18 6 52 52 H 0.96997 * 120.00640 * 94.99447 * 22 20 19 53 53 H 0.97005 * 119.99526 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6047 1.9823 -0.8411 5 6 1.6392 2.1264 1.3160 6 7 2.2449 3.4645 1.3506 7 6 1.4855 4.5566 1.5681 8 8 0.2977 4.4350 1.7998 9 6 2.0939 5.8970 1.5248 10 6 3.3872 6.2967 2.0913 11 6 3.5322 7.6007 1.8156 12 7 2.4313 8.0368 1.1250 13 6 1.5677 7.0200 0.9480 14 6 2.2490 9.4192 0.6585 15 6 3.2144 10.3303 1.4221 16 6 4.6322 9.7570 1.3438 17 6 4.7044 8.4781 2.1881 18 6 3.6951 3.5889 1.1497 19 6 4.0735 2.8883 -0.1588 20 6 3.5652 1.4452 -0.1257 21 1 3.8544 0.9370 -1.0457 22 7 4.1506 0.7477 1.0219 23 6 5.3878 0.1708 0.9142 24 1 5.9319 0.2297 -0.0170 25 6 5.9428 -0.4897 2.0017 26 7 5.2795 -0.5619 3.1362 27 14 7.6302 -1.2772 1.8544 28 1 8.1616 -1.0570 0.4854 29 1 8.5504 -0.6651 2.8464 30 1 7.5206 -2.7350 2.1147 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5137 0.8901 36 1 2.0006 1.5397 2.1606 37 1 0.5541 2.2149 1.3677 38 1 4.0835 5.6662 2.6242 39 1 0.6183 7.0806 0.4367 40 1 1.2229 9.7357 0.8457 41 1 2.4598 9.4771 -0.4094 42 1 2.9055 10.3932 2.4655 43 1 3.2006 11.3259 0.9787 44 1 4.8741 9.5238 0.3068 45 1 5.3427 10.4883 1.7291 46 1 5.6370 7.9536 1.9804 47 1 4.6522 8.7316 3.2469 48 1 3.9668 4.6429 1.0917 49 1 4.2207 3.1192 1.9811 50 1 3.6191 3.4149 -0.9982 51 1 5.1576 2.8901 -0.2722 52 1 3.6619 0.6945 1.8581 53 1 5.6672 -1.0237 3.8961 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037994128.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:58 Heat of formation + Delta-G solvation = -2.013609 kcal Electronic energy + Delta-G solvation = -31645.545716 eV Core-core repulsion = 27709.756192 eV Total energy + Delta-G solvation = -3935.789524 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.54382 -41.02694 -39.03341 -36.69966 -35.81292 -35.31627 -33.64881 -33.35755 -31.02876 -30.85722 -29.64216 -28.38902 -26.76644 -25.54585 -25.04894 -24.94004 -23.03553 -22.45510 -22.01964 -20.55697 -19.83703 -19.27879 -18.99110 -18.07379 -17.44875 -16.88849 -16.60452 -16.43574 -16.02593 -15.84332 -15.52875 -15.12435 -15.05581 -14.75710 -14.72822 -14.54611 -14.51710 -14.41494 -14.26102 -14.04303 -13.58227 -13.54393 -13.11418 -13.01534 -12.87586 -12.86291 -12.63377 -12.44063 -12.32294 -12.07463 -12.02266 -11.88643 -11.81888 -11.75513 -11.69300 -11.55083 -11.43774 -11.11345 -10.93561 -10.75025 -9.60686 -9.38381 -9.06578 -8.89057 -7.86234 -5.12617 0.92584 1.44098 1.49849 1.50629 1.59827 1.83086 2.16908 2.38656 2.61433 3.47290 3.64030 3.66009 3.79262 3.85021 3.88021 3.90251 4.03106 4.11504 4.14555 4.18611 4.36302 4.40595 4.42270 4.46720 4.47807 4.50976 4.54595 4.59188 4.63324 4.71974 4.86827 4.87601 4.91943 4.94024 4.98026 5.02352 5.08543 5.09222 5.14386 5.17807 5.21080 5.24517 5.30152 5.33883 5.34847 5.42702 5.53968 5.62615 5.71547 5.80793 6.13125 6.35240 6.38550 6.56672 7.25974 7.42379 8.18748 8.42980 9.37418 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.011079 B = 0.003233 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.594487 B = 8658.263321 C =10522.713710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.090 4.090 4 H 0.083 0.917 5 C 0.126 3.874 6 N -0.595 5.595 7 C 0.586 3.414 8 O -0.598 6.598 9 C -0.253 4.253 10 C -0.191 4.191 11 C 0.027 3.973 12 N -0.438 5.438 13 C 0.068 3.932 14 C 0.093 3.907 15 C -0.130 4.130 16 C -0.122 4.122 17 C -0.055 4.055 18 C 0.117 3.883 19 C -0.139 4.139 20 C 0.173 3.827 21 H 0.048 0.952 22 N -0.724 5.724 23 C -0.224 4.224 24 H 0.076 0.924 25 C -0.075 4.075 26 N -0.970 5.970 27 Si 0.965 3.035 28 H -0.266 1.266 29 H -0.298 1.298 30 H -0.300 1.300 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.064 0.936 35 H 0.043 0.957 36 H 0.044 0.956 37 H 0.083 0.917 38 H 0.139 0.861 39 H 0.184 0.816 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.069 0.931 43 H 0.112 0.888 44 H 0.068 0.932 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.087 0.913 48 H 0.109 0.891 49 H 0.045 0.955 50 H 0.069 0.931 51 H 0.065 0.935 52 H 0.373 0.627 53 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.794 24.350 -8.232 26.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.110 4.110 4 H 0.102 0.898 5 C 0.003 3.997 6 N -0.325 5.325 7 C 0.377 3.623 8 O -0.481 6.481 9 C -0.263 4.263 10 C -0.214 4.214 11 C -0.082 4.082 12 N -0.113 5.113 13 C -0.067 4.067 14 C -0.026 4.026 15 C -0.168 4.168 16 C -0.159 4.159 17 C -0.093 4.093 18 C -0.005 4.005 19 C -0.180 4.180 20 C 0.065 3.935 21 H 0.066 0.934 22 N -0.365 5.365 23 C -0.356 4.356 24 H 0.094 0.906 25 C -0.267 4.267 26 N -0.622 5.622 27 Si 0.795 3.205 28 H -0.190 1.190 29 H -0.226 1.226 30 H -0.228 1.228 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.102 0.898 38 H 0.156 0.844 39 H 0.201 0.799 40 H 0.122 0.878 41 H 0.116 0.884 42 H 0.087 0.913 43 H 0.130 0.870 44 H 0.086 0.914 45 H 0.112 0.888 46 H 0.108 0.892 47 H 0.105 0.895 48 H 0.127 0.873 49 H 0.064 0.936 50 H 0.088 0.912 51 H 0.084 0.916 52 H 0.206 0.794 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.263 24.587 -8.337 26.490 hybrid contribution 0.753 -1.376 0.848 1.783 sum -4.510 23.211 -7.489 24.803 Atomic orbital electron populations 1.21783 0.94727 1.01954 1.01836 1.21338 0.96105 0.95077 1.01774 1.21721 0.95856 0.96457 0.96918 0.89829 1.21586 0.98461 0.82030 0.97603 1.47982 1.08988 1.06012 1.69516 1.17933 0.84975 0.84409 0.74953 1.90681 1.17289 1.87604 1.52528 1.20183 0.99366 0.92855 1.13894 1.21702 0.96757 0.95153 1.07814 1.20683 0.91990 0.94024 1.01536 1.44147 1.14842 1.09697 1.42652 1.21660 0.96450 0.85785 1.02838 1.22449 1.02768 0.76860 1.00531 1.21878 0.94042 0.99575 1.01267 1.21652 0.97382 0.96369 1.00515 1.20519 0.93264 0.94532 1.00980 1.21896 0.78521 1.02340 0.97788 1.22375 1.01135 0.97752 0.96728 1.20440 0.91054 0.91335 0.90714 0.93393 1.42599 1.18397 1.64155 1.11362 1.19614 0.94276 1.24944 0.96740 0.90648 1.25409 1.01923 1.03327 0.96057 1.69833 1.39571 1.49871 1.02881 0.85185 0.80567 0.77287 0.77422 1.19032 1.22567 1.22810 0.91745 0.92019 0.93397 0.91745 0.93782 0.93734 0.89848 0.84368 0.79942 0.87826 0.88397 0.91266 0.86956 0.91368 0.88784 0.89164 0.89483 0.87329 0.93639 0.91228 0.91632 0.79410 0.94452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.08 9.68 71.98 0.70 -3.38 16 2 C -0.10 -3.54 5.19 30.59 0.16 -3.38 16 3 C -0.09 -3.11 2.15 -10.57 -0.02 -3.13 16 4 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 5 C 0.13 4.80 5.04 86.51 0.44 5.23 16 6 N -0.60 -22.11 2.97 -822.12 -2.44 -24.55 16 7 C 0.59 22.12 7.61 86.62 0.66 22.78 16 8 O -0.60 -25.84 16.52 -4.12 -0.07 -25.91 16 9 C -0.25 -7.87 5.47 -19.02 -0.10 -7.97 16 10 C -0.19 -5.30 8.55 23.54 0.20 -5.10 16 11 C 0.03 0.57 6.53 40.91 0.27 0.84 16 12 N -0.44 -8.29 3.11 -507.85 -1.58 -9.87 16 13 C 0.07 1.67 11.37 83.93 0.95 2.62 16 14 C 0.09 0.89 6.89 86.32 0.59 1.49 16 15 C -0.13 -0.87 5.91 30.69 0.18 -0.69 16 16 C -0.12 -1.03 5.97 30.78 0.18 -0.85 16 17 C -0.06 -0.78 6.26 30.11 0.19 -0.59 16 18 C 0.12 4.18 5.51 86.36 0.48 4.65 16 19 C -0.14 -4.85 5.78 30.67 0.18 -4.67 16 20 C 0.17 6.73 2.53 45.02 0.11 6.85 16 21 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 22 N -0.72 -35.14 3.72 -322.80 -1.20 -36.34 16 23 C -0.22 -11.99 9.93 84.03 0.83 -11.16 16 24 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 25 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 26 N -0.97 -59.27 13.06 21.65 0.28 -58.99 16 27 Si 0.96 46.05 29.55 68.60 2.03 48.08 16 28 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 29 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 30 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.05 1.40 6.70 -2.39 -0.02 1.38 16 34 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.04 1.77 7.70 -2.39 -0.02 1.76 16 36 H 0.04 1.94 6.64 -2.38 -0.02 1.92 16 37 H 0.08 3.19 5.75 -2.39 -0.01 3.17 16 38 H 0.14 3.99 7.20 -2.91 -0.02 3.97 16 39 H 0.18 3.74 8.06 -2.91 -0.02 3.72 16 40 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.07 0.58 8.11 -2.39 -0.02 0.56 16 43 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 44 H 0.07 0.62 8.12 -2.38 -0.02 0.60 16 45 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.11 3.47 4.07 -2.39 -0.01 3.46 16 49 H 0.05 1.94 7.74 -2.39 -0.02 1.92 16 50 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 51 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 52 H 0.37 19.91 5.93 -92.71 -0.55 19.36 16 53 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 Total: -1.00 -72.14 404.03 3.84 -68.31 By element: Atomic # 1 Polarization: 39.18 SS G_CDS: 0.35 Total: 39.53 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 6.46 Total: -0.25 kcal Atomic # 7 Polarization: -124.81 SS G_CDS: -4.93 Total: -129.74 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.07 Total: -25.91 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -72.14 3.84 -68.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037994128.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.292 kcal (2) G-P(sol) polarization free energy of solvation -72.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds