Wall clock time and date at job start Wed Apr 1 2020 02:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47089 * 2 1 4 4 C 1.53001 * 109.46900 * 120.00023 * 2 1 3 5 5 C 1.50701 * 109.46990 * 174.99923 * 4 2 1 6 6 C 1.35450 * 126.07121 * 270.04234 * 5 4 2 7 7 N 1.35530 * 108.87464 * 179.97438 * 6 5 4 8 8 H 0.96996 * 125.67815 * 180.25785 * 7 6 5 9 9 C 1.37658 * 108.64435 * 0.02562 * 7 6 5 10 10 C 1.46676 * 126.23271 * 179.97438 * 9 7 6 11 11 O 1.21699 * 119.99462 * 174.36694 * 10 9 7 12 12 N 1.34773 * 120.00185 * 354.35921 * 10 9 7 13 13 C 1.47580 * 125.67709 * 184.32462 * 12 10 9 14 14 C 1.55434 * 104.91248 * 156.09443 * 13 12 10 15 15 C 1.53497 * 101.30136 * 35.63232 * 14 13 12 16 16 C 1.53462 * 111.82294 * 204.13467 * 15 14 13 17 17 C 1.54634 * 102.74194 * 272.83934 * 16 15 14 18 18 N 1.47155 * 107.34153 * 339.33861 * 17 16 15 19 19 C 1.36936 * 125.59987 * 179.06782 * 18 17 16 20 20 H 1.07999 * 119.99985 * 185.04098 * 19 18 17 21 21 C 1.38813 * 119.99716 * 5.03837 * 19 18 17 22 22 N 1.31616 * 120.00515 * 354.88509 * 21 19 18 23 23 Si 1.86803 * 119.99753 * 174.88195 * 21 19 18 24 24 H 1.48498 * 109.47029 * 95.00113 * 23 21 19 25 25 H 1.48503 * 109.47427 * 215.00024 * 23 21 19 26 26 H 1.48498 * 109.47454 * 335.00053 * 23 21 19 27 27 C 1.47758 * 108.80100 * 359.08209 * 18 17 16 28 28 C 1.47450 * 125.67550 * 4.63326 * 12 10 9 29 29 C 1.37870 * 107.53050 * 359.97438 * 9 7 6 30 30 H 1.09000 * 109.47630 * 299.99770 * 1 2 3 31 31 H 1.09004 * 109.46912 * 60.00060 * 1 2 3 32 32 H 1.09001 * 109.47517 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47145 * 240.00052 * 2 1 3 34 34 H 1.09000 * 109.47538 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.47127 * 299.99946 * 3 2 1 36 36 H 1.09002 * 109.47084 * 60.00015 * 3 2 1 37 37 H 1.08994 * 109.47200 * 55.00357 * 4 2 1 38 38 H 1.08997 * 109.47263 * 295.00196 * 4 2 1 39 39 H 1.08003 * 125.56125 * 359.96067 * 6 5 4 40 40 H 1.09003 * 110.32499 * 275.08180 * 13 12 10 41 41 H 1.09003 * 110.32756 * 37.29941 * 13 12 10 42 42 H 1.08999 * 111.24247 * 277.56958 * 14 13 12 43 43 H 1.09003 * 110.96848 * 153.57793 * 14 13 12 44 44 H 1.08992 * 110.75836 * 31.15032 * 16 15 14 45 45 H 1.08997 * 110.75933 * 154.34385 * 16 15 14 46 46 H 1.08995 * 109.87293 * 98.77507 * 17 16 15 47 47 H 1.09000 * 109.86790 * 219.76401 * 17 16 15 48 48 H 0.97001 * 120.00545 * 179.97438 * 22 21 19 49 49 H 1.08992 * 110.39524 * 263.54608 * 27 18 17 50 50 H 1.09005 * 110.39199 * 141.14282 * 27 18 17 51 51 H 1.08997 * 109.99523 * 301.53461 * 28 12 10 52 52 H 1.08998 * 109.99294 * 62.82442 * 28 12 10 53 53 H 1.08004 * 126.45621 * 179.97438 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5418 -0.8294 1.1889 6 6 4.2467 -1.8467 0.6385 7 7 5.5699 -1.5880 0.7759 8 1 6.2926 -2.1552 0.4645 9 6 5.7177 -0.3839 1.4264 10 6 6.9870 0.2634 1.7745 11 8 6.9879 1.3794 2.2600 12 7 8.1524 -0.3778 1.5569 13 6 9.4900 0.1143 1.9398 14 6 10.3684 -1.1629 2.0540 15 6 9.7908 -2.0273 0.9247 16 6 10.0394 -3.5222 1.1663 17 6 11.4367 -3.7409 0.5409 18 7 11.6716 -2.6379 -0.4045 19 6 12.8047 -2.4562 -1.1516 20 1 12.9153 -1.5693 -1.7579 21 6 13.8112 -3.4120 -1.1297 22 7 13.7227 -4.4424 -0.3157 23 14 15.2912 -3.2357 -2.2558 24 1 16.3957 -2.5687 -1.5209 25 1 15.7355 -4.5801 -2.7036 26 1 14.9189 -2.4182 -3.4384 27 6 10.4843 -1.7585 -0.4148 28 6 8.3035 -1.6846 0.8910 29 6 4.4552 0.1028 1.6911 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.6054 -1.7198 1.2951 38 1 1.7515 -0.1584 2.1370 39 1 3.8232 -2.7214 0.1672 40 1 9.8829 0.7798 1.1712 41 1 9.4438 0.6287 2.8997 42 1 10.2386 -1.6463 3.0222 43 1 11.4181 -0.9320 1.8721 44 1 10.0549 -3.7438 2.2333 45 1 9.2872 -4.1260 0.6587 46 1 12.1978 -3.7287 1.3209 47 1 11.4615 -4.6948 0.0140 48 1 14.4258 -5.1105 -0.3007 49 1 9.8255 -2.0195 -1.2429 50 1 10.7863 -0.7134 -0.4833 51 1 7.7339 -2.4439 1.4266 52 1 7.9587 -1.6191 -0.1409 53 1 4.2166 1.0292 2.1924 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041788460.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:38 Heat of formation + Delta-G solvation = 12.028358 kcal Electronic energy + Delta-G solvation = -30768.798537 eV Core-core repulsion = 26833.617919 eV Total energy + Delta-G solvation = -3935.180618 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.51176 -41.19487 -39.58277 -37.28870 -37.11966 -34.51222 -32.71483 -31.98554 -31.20300 -30.28056 -29.89744 -27.89156 -27.44783 -27.08048 -25.61956 -24.45163 -22.52917 -22.10815 -21.52925 -20.97337 -20.38430 -19.95949 -18.84280 -18.54904 -17.29182 -17.12121 -16.76432 -16.30350 -16.02410 -15.69714 -15.66830 -15.51642 -15.00873 -14.74819 -14.63359 -14.38354 -14.21459 -14.02738 -13.86280 -13.81427 -13.76061 -13.54147 -13.08753 -13.01919 -12.96409 -12.88884 -12.76925 -12.60127 -12.47624 -12.29989 -12.03695 -11.80656 -11.75429 -11.67521 -11.56381 -11.51582 -11.39357 -11.34976 -11.18267 -10.67909 -9.95557 -9.65611 -9.04529 -8.87914 -7.86030 -5.19632 0.45856 1.45676 1.46046 1.55221 1.76687 1.77494 2.25631 2.32334 2.48469 3.26673 3.36027 3.36754 3.54065 3.72466 3.84961 4.08376 4.11278 4.12854 4.18796 4.22258 4.25169 4.30231 4.34222 4.45044 4.55098 4.58538 4.63743 4.69359 4.77431 4.82893 4.87557 4.89910 4.93792 5.00754 5.01405 5.08081 5.12224 5.13937 5.17599 5.20667 5.23210 5.28636 5.36288 5.40675 5.46620 5.56310 5.62565 5.70011 5.79980 5.86807 6.00864 6.20532 6.34071 6.53559 6.97573 7.11466 7.78044 8.41574 9.24076 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.020449 B = 0.002153 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.908343 B =13001.755338 C =13407.302007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 C -0.148 4.148 4 C -0.037 4.037 5 C -0.183 4.183 6 C 0.041 3.959 7 N -0.534 5.534 8 H 0.426 0.574 9 C -0.077 4.077 10 C 0.599 3.401 11 O -0.578 6.578 12 N -0.616 5.616 13 C 0.112 3.888 14 C -0.104 4.104 15 C -0.070 4.070 16 C -0.115 4.115 17 C 0.186 3.814 18 N -0.623 5.623 19 C -0.239 4.239 20 H 0.078 0.922 21 C -0.063 4.063 22 N -0.947 5.947 23 Si 0.972 3.028 24 H -0.289 1.289 25 H -0.294 1.294 26 H -0.270 1.270 27 C 0.147 3.853 28 C 0.113 3.887 29 C -0.108 4.108 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.042 0.958 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.207 0.793 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.007 0.993 47 H 0.010 0.990 48 H 0.246 0.754 49 H 0.030 0.970 50 H 0.036 0.964 51 H 0.096 0.904 52 H 0.084 0.916 53 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.300 3.437 3.175 25.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 C -0.205 4.205 4 C -0.075 4.075 5 C -0.189 4.189 6 C -0.096 4.096 7 N -0.135 5.135 8 H 0.270 0.730 9 C -0.189 4.189 10 C 0.391 3.609 11 O -0.458 6.458 12 N -0.349 5.349 13 C -0.010 4.010 14 C -0.142 4.142 15 C -0.071 4.071 16 C -0.153 4.153 17 C 0.061 3.939 18 N -0.349 5.349 19 C -0.368 4.368 20 H 0.096 0.904 21 C -0.256 4.256 22 N -0.596 5.596 23 Si 0.801 3.199 24 H -0.217 1.217 25 H -0.221 1.221 26 H -0.195 1.195 27 C 0.022 3.978 28 C -0.009 4.009 29 C -0.135 4.135 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.223 0.777 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.107 0.893 43 H 0.091 0.909 44 H 0.104 0.896 45 H 0.104 0.896 46 H 0.025 0.975 47 H 0.029 0.971 48 H 0.056 0.944 49 H 0.047 0.953 50 H 0.054 0.946 51 H 0.114 0.886 52 H 0.102 0.898 53 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -24.983 3.886 3.347 25.504 hybrid contribution 1.971 -0.094 -0.721 2.101 sum -23.011 3.792 2.626 23.469 Atomic orbital electron populations 1.21830 0.94426 1.02229 1.01757 1.21076 0.95771 0.95718 0.98136 1.21862 1.00655 0.96736 1.01275 1.20042 0.88228 1.01456 0.97771 1.19614 0.96368 0.96006 1.06890 1.22506 0.81661 1.01893 1.03550 1.42625 1.09107 1.17145 1.44582 0.73024 1.20036 0.93900 0.92118 1.12887 1.17062 0.81907 0.84201 0.77714 1.90796 1.87066 1.20007 1.47972 1.48586 1.06112 1.21470 1.58698 1.22345 0.81028 0.96831 1.00776 1.22515 0.99040 0.94196 0.98485 1.21374 0.93074 0.96643 0.96030 1.22598 0.97445 0.93631 1.01632 1.20967 0.92290 0.89969 0.90654 1.44802 1.14171 1.27651 1.48280 1.19379 0.94454 1.03591 1.19386 0.90401 1.25565 1.01639 0.97161 1.01248 1.70162 1.34719 1.14107 1.40607 0.85163 0.79438 0.76503 0.78844 1.21657 1.22085 1.19530 1.21489 0.88262 0.93808 0.94251 1.22065 0.96503 0.84458 0.97909 1.21249 0.90032 1.00020 1.02233 0.92679 0.92821 0.91773 0.91385 0.93860 0.93069 0.92925 0.89641 0.91621 0.77660 0.91730 0.90351 0.89317 0.90875 0.89606 0.89634 0.97450 0.97125 0.94445 0.95258 0.94571 0.88632 0.89800 0.84959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.19 71.98 0.66 -0.75 16 2 C -0.09 -1.10 2.91 -10.80 -0.03 -1.13 16 3 C -0.15 -2.31 8.92 71.98 0.64 -1.66 16 4 C -0.04 -0.46 5.18 29.85 0.15 -0.31 16 5 C -0.18 -3.08 4.78 -20.12 -0.10 -3.18 16 6 C 0.04 0.56 11.80 83.48 0.99 1.55 16 7 N -0.53 -9.12 5.60 -183.62 -1.03 -10.15 16 8 H 0.43 5.85 4.98 -92.71 -0.46 5.39 16 9 C -0.08 -1.87 6.89 40.35 0.28 -1.59 16 10 C 0.60 17.87 7.81 86.45 0.68 18.55 16 11 O -0.58 -21.41 17.19 -4.35 -0.07 -21.49 16 12 N -0.62 -16.30 3.34 -817.18 -2.73 -19.04 16 13 C 0.11 3.09 6.83 87.01 0.59 3.68 16 14 C -0.10 -2.94 5.99 31.60 0.19 -2.75 16 15 C -0.07 -1.98 0.61 -51.90 -0.03 -2.01 16 16 C -0.11 -3.47 5.85 31.31 0.18 -3.29 16 17 C 0.19 8.43 5.35 86.81 0.46 8.89 16 18 N -0.62 -29.86 3.41 -693.51 -2.36 -32.22 16 19 C -0.24 -12.94 10.27 84.03 0.86 -12.07 16 20 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 21 C -0.06 -3.49 5.48 84.86 0.47 -3.02 16 22 N -0.95 -55.28 10.33 21.65 0.22 -55.05 16 23 Si 0.97 45.00 29.56 68.60 2.03 47.03 16 24 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 26 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 27 C 0.15 5.40 6.10 86.21 0.53 5.93 16 28 C 0.11 2.48 4.38 86.08 0.38 2.86 16 29 C -0.11 -2.48 9.26 22.57 0.21 -2.27 16 30 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.04 0.84 6.42 -2.39 -0.02 0.82 16 35 H 0.05 0.74 8.14 -2.39 -0.02 0.73 16 36 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.21 1.21 8.06 -2.91 -0.02 1.18 16 40 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.08 2.15 8.09 -2.39 -0.02 2.13 16 42 H 0.09 2.26 7.85 -2.39 -0.02 2.24 16 43 H 0.07 2.44 8.00 -2.39 -0.02 2.42 16 44 H 0.09 2.29 7.80 -2.39 -0.02 2.27 16 45 H 0.09 2.18 8.07 -2.39 -0.02 2.16 16 46 H 0.01 0.38 7.53 -2.39 -0.02 0.36 16 47 H 0.01 0.55 7.36 -2.39 -0.02 0.53 16 48 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 49 H 0.03 1.04 7.79 -2.39 -0.02 1.02 16 50 H 0.04 1.36 7.96 -2.38 -0.02 1.34 16 51 H 0.10 1.64 6.69 -2.39 -0.02 1.62 16 52 H 0.08 1.66 6.85 -2.39 -0.02 1.64 16 53 H 0.13 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -70.98 409.28 3.59 -67.39 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.43 Total: 16.13 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 7.11 Total: 7.41 kcal Atomic # 7 Polarization: -110.57 SS G_CDS: -5.90 Total: -116.47 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.07 Total: -21.49 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -70.98 3.59 -67.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041788460.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.414 kcal (2) G-P(sol) polarization free energy of solvation -70.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds