Wall clock time and date at job start Wed Apr 1 2020 04:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46898 * 109.47047 * 10.25999 * 3 2 1 5 5 C 1.46846 * 110.99994 * 45.79357 * 4 3 2 6 6 C 1.53043 * 109.52376 * 185.83941 * 5 4 3 7 7 C 1.53117 * 109.27487 * 300.81733 * 6 5 4 8 8 C 1.50702 * 109.57304 * 177.58901 * 7 6 5 9 9 O 1.21277 * 120.00123 * 240.28207 * 8 7 6 10 10 N 1.34773 * 119.99921 * 60.28762 * 8 7 6 11 11 C 1.47580 * 125.67754 * 359.68998 * 10 8 7 12 12 C 1.55445 * 104.91578 * 156.09375 * 11 10 8 13 13 C 1.53495 * 101.29447 * 35.63274 * 12 11 10 14 14 C 1.53470 * 111.81860 * 204.13409 * 13 12 11 15 15 C 1.54631 * 102.74359 * 272.83918 * 14 13 12 16 16 N 1.47160 * 107.34237 * 339.34134 * 15 14 13 17 17 C 1.36932 * 125.59881 * 179.06406 * 16 15 14 18 18 H 1.07998 * 120.00265 * 179.97438 * 17 16 15 19 19 C 1.38814 * 120.00155 * 359.97217 * 17 16 15 20 20 N 1.31618 * 120.00021 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00090 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47518 * 59.99803 * 21 19 17 23 23 H 1.48505 * 109.47077 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.46983 * 299.99540 * 21 19 17 25 25 C 1.47758 * 108.79965 * 359.08009 * 16 15 14 26 26 C 1.47451 * 125.67859 * 179.97438 * 10 8 7 27 27 C 1.53117 * 109.16254 * 57.65332 * 7 6 5 28 28 C 1.46848 * 110.99765 * 169.99724 * 4 3 2 29 29 H 4.40879 * 5.52178 * 179.97438 * 4 1 2 30 30 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 31 31 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 32 32 H 1.09008 * 109.45892 * 305.84659 * 5 4 3 33 33 H 1.08990 * 109.46958 * 65.81901 * 5 4 3 34 34 H 1.08997 * 109.50164 * 180.87718 * 6 5 4 35 35 H 1.08997 * 109.50459 * 60.75779 * 6 5 4 36 36 H 1.08997 * 109.52364 * 297.74543 * 7 6 5 37 37 H 1.08999 * 110.32651 * 275.07785 * 11 10 8 38 38 H 1.09000 * 110.33079 * 37.29777 * 11 10 8 39 39 H 1.08996 * 111.23750 * 277.57336 * 12 11 10 40 40 H 1.08997 * 110.96476 * 153.57553 * 12 11 10 41 41 H 1.08997 * 110.75807 * 31.15315 * 14 13 12 42 42 H 1.09000 * 110.75724 * 154.34367 * 14 13 12 43 43 H 1.09004 * 109.86652 * 98.77585 * 15 14 13 44 44 H 1.08996 * 109.87449 * 219.76053 * 15 14 13 45 45 H 0.96996 * 120.00350 * 179.97438 * 20 19 17 46 46 H 1.08998 * 110.39868 * 263.54737 * 25 16 15 47 47 H 1.09002 * 110.39058 * 141.14755 * 25 16 15 48 48 H 1.09000 * 109.99289 * 301.53696 * 26 10 8 49 49 H 1.08998 * 109.99615 * 62.86760 * 26 10 8 50 50 H 1.09006 * 109.50267 * 182.40228 * 27 7 6 51 51 H 1.09001 * 109.50306 * 62.28772 * 27 7 6 52 52 H 1.09001 * 109.46519 * 294.17603 * 28 4 3 53 53 H 1.08999 * 109.46182 * 54.15812 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1362 -1.3619 -0.2467 5 6 2.4107 -1.9890 -1.3588 6 6 2.8440 -3.4507 -1.4927 7 6 4.3530 -3.5095 -1.7455 8 6 4.7968 -4.9477 -1.8196 9 8 5.6162 -5.3708 -1.0319 10 7 4.2832 -5.7638 -2.7611 11 6 3.2790 -5.3847 -3.7740 12 6 3.4794 -6.3986 -4.9351 13 6 3.8412 -7.6740 -4.1615 14 6 4.6493 -8.6538 -5.0231 15 6 3.5467 -9.4691 -5.7376 16 7 2.3129 -9.3238 -4.9488 17 6 1.1000 -9.8798 -5.2566 18 1 0.2504 -9.7140 -4.6107 19 6 0.9622 -10.6564 -6.3988 20 7 1.9974 -10.8581 -7.1863 21 14 -0.6926 -11.4142 -6.8191 22 1 -1.7001 -10.3375 -6.9938 23 1 -0.5753 -12.1922 -8.0786 24 1 -1.1178 -12.3162 -5.7186 25 6 2.5978 -8.4792 -3.7703 26 6 4.6268 -7.1856 -2.9471 27 6 5.0827 -2.8072 -0.5971 28 6 4.5845 -1.3642 -0.4892 29 1 -1.0498 -0.0004 0.0001 30 1 3.0090 0.6649 -0.7843 31 1 3.0092 0.3479 0.9672 32 1 1.3390 -1.9442 -1.1644 33 1 2.6343 -1.4578 -2.2839 34 1 2.3168 -3.9114 -2.3280 35 1 2.6080 -3.9859 -0.5730 36 1 4.5847 -3.0080 -2.6851 37 1 2.2738 -5.4713 -3.3615 38 1 3.4592 -4.3683 -4.1240 39 1 4.2956 -6.0930 -5.5896 40 1 2.5567 -6.5320 -5.4999 41 1 5.2628 -8.1168 -5.7465 42 1 5.2670 -9.2988 -4.3982 43 1 3.3912 -9.0796 -6.7437 44 1 3.8356 -10.5189 -5.7874 45 1 1.9012 -11.4011 -7.9843 46 1 2.8060 -9.1004 -2.8992 47 1 1.7600 -7.8113 -3.5703 48 1 5.6965 -7.2899 -3.1284 49 1 4.3406 -7.7568 -2.0640 50 1 6.1551 -2.8084 -0.7927 51 1 4.8820 -3.3323 0.3367 52 1 4.7981 -0.8359 -1.4184 53 1 5.0919 -0.8659 0.3368 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041845197.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:13 Heat of formation + Delta-G solvation = 36.095531 kcal Electronic energy + Delta-G solvation = -31056.271055 eV Core-core repulsion = 27122.134068 eV Total energy + Delta-G solvation = -3934.136987 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.75825 -40.41539 -39.24015 -37.18039 -35.60050 -34.49898 -33.16339 -31.97531 -31.67329 -30.83987 -29.92347 -28.43729 -27.29301 -25.67296 -24.52090 -24.02629 -23.68548 -22.10025 -21.11560 -20.32883 -20.01042 -18.97138 -18.82714 -17.88605 -17.25583 -16.82982 -16.74847 -16.51120 -16.08417 -15.86973 -15.73025 -15.63532 -15.17270 -14.77986 -14.66343 -14.38030 -14.03402 -13.94331 -13.84787 -13.79557 -13.63057 -13.56876 -13.05974 -12.96166 -12.94331 -12.76725 -12.57069 -12.47061 -12.35647 -12.13865 -12.06164 -11.79592 -11.73703 -11.56602 -11.51845 -11.41776 -11.28781 -11.23715 -11.04385 -10.72604 -10.66836 -9.67439 -9.26940 -8.87434 -7.82675 -5.17690 1.47037 1.49739 1.55910 1.60159 1.76892 1.93591 1.96131 2.50854 3.08371 3.30416 3.37534 3.47332 3.56017 3.58837 3.67531 3.76783 3.83562 3.91572 4.16367 4.21175 4.24570 4.28458 4.35144 4.38390 4.42149 4.55196 4.58242 4.61002 4.63322 4.70618 4.71784 4.76680 4.79418 4.85954 4.89494 4.93378 5.00394 5.03583 5.05515 5.09764 5.13831 5.18054 5.23352 5.31128 5.37481 5.39393 5.47449 5.69362 5.80570 6.03568 6.11104 6.21406 6.53355 6.71248 7.12630 7.12954 7.79420 8.44294 9.27319 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.014786 B = 0.002390 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.175829 B =11714.968743 C =13181.866620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.215 4.215 3 C 0.162 3.838 4 N -0.552 5.552 5 C 0.061 3.939 6 C -0.108 4.108 7 C -0.095 4.095 8 C 0.529 3.471 9 O -0.586 6.586 10 N -0.614 5.614 11 C 0.105 3.895 12 C -0.107 4.107 13 C -0.072 4.072 14 C -0.118 4.118 15 C 0.190 3.810 16 N -0.623 5.623 17 C -0.240 4.240 18 H 0.081 0.919 19 C -0.065 4.065 20 N -0.951 5.951 21 Si 0.976 3.024 22 H -0.274 1.274 23 H -0.296 1.296 24 H -0.281 1.281 25 C 0.149 3.851 26 C 0.131 3.869 27 C -0.092 4.092 28 C 0.063 3.937 29 H 0.240 0.760 30 H 0.072 0.928 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.049 0.951 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.117 0.883 37 H 0.078 0.922 38 H 0.107 0.893 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.066 0.934 43 H 0.017 0.983 44 H 0.001 0.999 45 H 0.246 0.754 46 H 0.013 0.987 47 H 0.046 0.954 48 H 0.071 0.929 49 H 0.056 0.944 50 H 0.075 0.925 51 H 0.056 0.944 52 H 0.053 0.947 53 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.444 25.164 10.428 27.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.215 4.215 3 C 0.036 3.964 4 N -0.278 5.278 5 C -0.066 4.066 6 C -0.146 4.146 7 C -0.116 4.116 8 C 0.319 3.681 9 O -0.466 6.466 10 N -0.347 5.347 11 C -0.017 4.017 12 C -0.145 4.145 13 C -0.073 4.073 14 C -0.156 4.156 15 C 0.065 3.935 16 N -0.349 5.349 17 C -0.369 4.369 18 H 0.099 0.901 19 C -0.258 4.258 20 N -0.600 5.600 21 Si 0.804 3.196 22 H -0.200 1.200 23 H -0.222 1.222 24 H -0.207 1.207 25 C 0.024 3.976 26 C 0.008 3.992 27 C -0.130 4.130 28 C -0.064 4.064 29 H 0.256 0.744 30 H 0.090 0.910 31 H 0.126 0.874 32 H 0.095 0.905 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.074 0.926 36 H 0.135 0.865 37 H 0.096 0.904 38 H 0.125 0.875 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.085 0.915 43 H 0.035 0.965 44 H 0.019 0.981 45 H 0.055 0.945 46 H 0.031 0.969 47 H 0.065 0.935 48 H 0.089 0.911 49 H 0.075 0.925 50 H 0.093 0.907 51 H 0.074 0.926 52 H 0.072 0.928 53 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.751 24.593 11.165 27.268 hybrid contribution -0.880 -0.940 -1.071 1.675 sum 2.872 23.652 10.094 25.876 Atomic orbital electron populations 1.25666 0.96882 0.98577 1.00254 1.23291 0.95130 1.01792 1.01282 1.19155 0.84279 0.89668 1.03255 1.62031 1.04782 1.18276 1.42666 1.22068 0.98729 0.93598 0.92233 1.21678 0.92873 0.97264 1.02764 1.21365 0.97579 0.90256 1.02374 1.20906 0.80035 0.88585 0.78559 1.90671 1.35808 1.77878 1.42258 1.48762 1.42640 1.10823 1.32434 1.22705 0.91750 0.99970 0.87272 1.22543 1.02931 0.92408 0.96631 1.21390 0.95365 0.95734 0.94813 1.22573 0.97069 0.97359 0.98602 1.20925 0.84195 0.95461 0.92962 1.44825 1.06934 1.58246 1.24883 1.19382 0.87574 1.24181 1.05719 0.90137 1.25598 1.00909 1.01479 0.97788 1.70170 1.30119 1.43994 1.15684 0.85198 0.79453 0.78189 0.76765 1.20014 1.22218 1.20723 1.21446 0.95211 0.91715 0.89206 1.21565 0.99236 0.81590 0.96812 1.21350 0.99445 0.94995 0.97241 1.22114 0.86575 0.95977 1.01778 0.74378 0.91037 0.87425 0.90528 0.93274 0.89287 0.92587 0.86526 0.90405 0.87462 0.89365 0.90587 0.89548 0.91495 0.96478 0.98078 0.94471 0.96880 0.93528 0.91085 0.92522 0.90688 0.92555 0.92849 0.88745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.64 19.02 74.32 1.41 -1.22 16 2 C -0.21 -3.26 11.51 31.13 0.36 -2.91 16 3 C 0.16 1.96 5.77 84.50 0.49 2.44 16 4 N -0.55 -8.13 4.79 -907.46 -4.35 -12.48 16 5 C 0.06 0.90 5.08 86.33 0.44 1.34 16 6 C -0.11 -1.81 5.16 30.65 0.16 -1.66 16 7 C -0.09 -1.69 1.94 -11.46 -0.02 -1.71 16 8 C 0.53 13.80 7.22 87.66 0.63 14.44 16 9 O -0.59 -20.10 16.31 -3.02 -0.05 -20.15 16 10 N -0.61 -15.40 3.34 -812.48 -2.71 -18.11 16 11 C 0.10 2.13 5.08 87.01 0.44 2.57 16 12 C -0.11 -2.80 5.99 31.60 0.19 -2.61 16 13 C -0.07 -2.26 0.61 -51.90 -0.03 -2.29 16 14 C -0.12 -4.13 5.85 31.31 0.18 -3.94 16 15 C 0.19 9.14 5.35 86.81 0.46 9.60 16 16 N -0.62 -31.14 3.41 -693.50 -2.36 -33.51 16 17 C -0.24 -13.20 10.28 84.03 0.86 -12.34 16 18 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 19 C -0.06 -3.64 5.49 84.86 0.47 -3.18 16 20 N -0.95 -56.63 10.30 21.65 0.22 -56.41 16 21 Si 0.98 45.33 29.55 68.60 2.03 47.36 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 25 C 0.15 5.89 6.10 86.21 0.53 6.42 16 26 C 0.13 3.81 6.14 86.08 0.53 4.33 16 27 C -0.09 -1.62 4.68 30.65 0.14 -1.48 16 28 C 0.06 0.77 5.42 86.33 0.47 1.24 16 29 H 0.24 1.68 7.80 -4.43 -0.03 1.65 16 30 H 0.07 0.65 8.08 -2.39 -0.02 0.63 16 31 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 1.25 6.36 -2.38 -0.02 1.23 16 33 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.09 1.34 5.10 -2.39 -0.01 1.33 16 35 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.12 1.56 7.85 -2.39 -0.02 1.54 16 37 H 0.08 1.56 7.12 -2.39 -0.02 1.54 16 38 H 0.11 1.50 7.35 -2.39 -0.02 1.48 16 39 H 0.09 2.07 7.85 -2.39 -0.02 2.05 16 40 H 0.08 2.32 8.00 -2.39 -0.02 2.30 16 41 H 0.09 2.64 7.80 -2.39 -0.02 2.62 16 42 H 0.07 2.26 8.07 -2.39 -0.02 2.24 16 43 H 0.02 0.91 7.38 -2.38 -0.02 0.89 16 44 H 0.00 0.05 7.50 -2.39 -0.02 0.04 16 45 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 46 H 0.01 0.55 7.79 -2.39 -0.02 0.53 16 47 H 0.05 1.76 7.96 -2.39 -0.02 1.74 16 48 H 0.07 2.05 7.89 -2.39 -0.02 2.03 16 49 H 0.06 1.79 7.61 -2.39 -0.02 1.77 16 50 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 51 H 0.06 1.28 8.04 -2.39 -0.02 1.26 16 52 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 53 H 0.09 0.93 8.12 -2.39 -0.02 0.91 16 Total: -1.00 -72.10 406.22 1.36 -70.75 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.87 Total: 13.51 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 7.71 Total: 9.04 kcal Atomic # 7 Polarization: -111.31 SS G_CDS: -9.20 Total: -120.51 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.05 Total: -20.15 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -72.10 1.36 -70.75 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041845197.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.842 kcal (2) G-P(sol) polarization free energy of solvation -72.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds