Wall clock time and date at job start Wed Apr 1 2020 02:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47164 * 2 1 4 4 C 1.52993 * 109.47053 * 120.00501 * 2 1 3 5 5 C 1.50702 * 109.47476 * 64.99694 * 4 2 1 6 6 C 1.35455 * 126.06596 * 270.02686 * 5 4 2 7 7 N 1.35532 * 108.86633 * 179.74480 * 6 5 4 8 8 H 0.97006 * 125.67402 * 180.26328 * 7 6 5 9 9 C 1.37643 * 108.64807 * 0.37478 * 7 6 5 10 10 C 1.46678 * 126.23488 * 179.88646 * 9 7 6 11 11 O 1.21701 * 119.99948 * 157.06341 * 10 9 7 12 12 N 1.34778 * 120.00216 * 337.07122 * 10 9 7 13 13 C 1.46594 * 119.75778 * 173.28985 * 12 10 9 14 14 C 1.53881 * 110.71473 * 132.24859 * 13 12 10 15 15 C 1.51977 * 107.29362 * 51.81221 * 14 13 12 16 16 H 1.09005 * 111.56896 * 56.85679 * 15 14 13 17 17 C 1.53695 * 115.00424 * 184.56696 * 15 14 13 18 18 C 1.55291 * 101.81915 * 153.45466 * 17 15 14 19 19 N 1.48154 * 107.04293 * 337.55754 * 18 17 15 20 20 C 1.36938 * 126.40002 * 174.97464 * 19 18 17 21 21 H 1.08003 * 119.99904 * 180.02562 * 20 19 18 22 22 C 1.38816 * 120.00066 * 0.02563 * 20 19 18 23 23 N 1.31611 * 119.99886 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99997 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47042 * 59.99915 * 24 22 20 26 26 H 1.48495 * 109.47028 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47134 * 300.00080 * 24 22 20 28 28 C 1.45504 * 107.20323 * 354.99583 * 19 18 17 29 29 H 1.09001 * 109.57086 * 273.37512 * 28 19 18 30 30 C 1.47797 * 119.75091 * 353.28455 * 12 10 9 31 31 C 1.37877 * 107.53549 * 359.63116 * 9 7 6 32 32 H 1.09005 * 109.47444 * 59.99467 * 1 2 3 33 33 H 1.08994 * 109.47413 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47075 * 299.99794 * 1 2 3 35 35 H 1.09001 * 109.47075 * 240.00206 * 2 1 3 36 36 H 1.08998 * 109.47082 * 179.97438 * 3 2 1 37 37 H 1.08996 * 109.47447 * 300.00496 * 3 2 1 38 38 H 1.09003 * 109.46795 * 60.00641 * 3 2 1 39 39 H 1.09005 * 109.47350 * 304.99964 * 4 2 1 40 40 H 1.08999 * 109.47181 * 184.99980 * 4 2 1 41 41 H 1.07996 * 125.56817 * 0.02562 * 6 5 4 42 42 H 1.09004 * 109.22816 * 11.93002 * 13 12 10 43 43 H 1.09000 * 109.22452 * 252.57172 * 13 12 10 44 44 H 1.09003 * 109.89590 * 292.36600 * 14 13 12 45 45 H 1.09004 * 109.89247 * 171.25399 * 14 13 12 46 46 H 1.09005 * 110.95990 * 35.32215 * 17 15 14 47 47 H 1.09007 * 110.99294 * 271.60221 * 17 15 14 48 48 H 1.09004 * 109.92565 * 218.20763 * 18 17 15 49 49 H 1.09001 * 110.09008 * 96.99868 * 18 17 15 50 50 H 0.96999 * 120.00124 * 179.97438 * 23 22 20 51 51 H 1.09000 * 110.06475 * 112.04624 * 30 12 10 52 52 H 1.09003 * 110.06558 * 350.47408 * 30 12 10 53 53 H 1.07990 * 126.45885 * 180.19185 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6412 -2.1734 1.1888 6 6 0.4945 -2.7063 1.6742 7 7 0.4919 -4.0391 1.4280 8 1 -0.2153 -4.6576 1.6694 9 6 1.6608 -4.3693 0.7806 10 6 2.0567 -5.7097 0.3357 11 8 2.8691 -5.8380 -0.5613 12 7 1.5207 -6.7995 0.9203 13 6 1.8054 -8.1309 0.3769 14 6 2.2117 -9.1016 1.4996 15 6 1.1411 -9.0216 2.5754 16 1 0.1529 -9.2483 2.1750 17 6 1.4283 -9.8461 3.8403 18 6 0.6294 -9.0639 4.9180 19 7 0.4499 -7.6841 4.4092 20 6 -0.2813 -6.6886 5.0004 21 1 -0.3425 -5.7152 4.5365 22 6 -0.9437 -6.9306 6.1961 23 7 -0.8695 -8.1169 6.7611 24 14 -1.9406 -5.5724 7.0030 25 1 -3.0168 -5.1326 6.0792 26 1 -2.5453 -6.0822 8.2598 27 1 -1.0524 -4.4228 7.3112 28 6 1.1952 -7.5844 3.1635 29 1 2.2300 -7.3169 3.3775 30 6 0.6505 -6.6432 2.1046 31 6 2.3893 -3.2096 0.6212 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 3.1300 1.4425 0.0005 37 1 1.6767 1.9564 -0.8899 38 1 1.6767 1.9563 0.8901 39 1 1.6053 -0.2619 2.1369 40 1 3.1263 -0.6444 1.2951 41 1 -0.2917 -2.1580 2.1719 42 1 2.6181 -8.0574 -0.3458 43 1 0.9150 -8.5124 -0.1229 44 1 3.1761 -8.8072 1.9136 45 1 2.2693 -10.1175 1.1088 46 1 2.4938 -9.8489 4.0703 47 1 1.0510 -10.8635 3.7372 48 1 1.1883 -9.0448 5.8537 49 1 -0.3428 -9.5308 5.0758 50 1 -1.3320 -8.2859 7.5968 51 1 -0.3747 -6.9156 1.8539 52 1 0.6883 -5.6146 2.4634 53 1 3.3556 -3.1187 0.1477 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042314490.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:26 Heat of formation + Delta-G solvation = 21.486762 kcal Electronic energy + Delta-G solvation = -31634.846147 eV Core-core repulsion = 27700.075676 eV Total energy + Delta-G solvation = -3934.770471 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.63046 -41.04404 -39.58365 -37.23759 -36.76950 -34.82610 -33.29394 -32.27938 -31.14853 -30.44771 -30.00983 -27.91224 -27.31880 -26.45425 -25.67366 -24.00356 -22.61688 -21.92666 -21.30639 -21.25685 -20.88664 -20.07248 -18.76702 -18.46223 -17.45250 -16.86367 -16.68641 -16.42908 -16.05082 -15.81240 -15.66841 -15.35300 -15.09335 -14.77910 -14.66755 -14.51304 -14.38684 -14.14653 -13.88296 -13.79659 -13.54306 -13.49078 -13.19273 -13.09635 -12.99261 -12.73061 -12.69871 -12.54624 -12.34605 -12.15684 -12.06644 -11.86152 -11.73052 -11.61242 -11.57346 -11.42289 -11.36001 -11.31580 -10.94891 -10.71072 -9.89580 -9.69267 -9.04488 -8.92328 -7.84739 -5.20845 0.47445 1.46622 1.49551 1.55239 1.69696 1.79637 2.11176 2.38727 2.49950 3.33186 3.35213 3.45584 3.82114 3.87860 3.96795 4.04588 4.11392 4.13260 4.19538 4.22292 4.28152 4.31101 4.37494 4.42573 4.55457 4.56028 4.59728 4.76758 4.80144 4.83763 4.88491 4.89329 4.92275 5.03372 5.06472 5.10150 5.10787 5.11318 5.17221 5.18766 5.29880 5.38398 5.39910 5.46190 5.52661 5.56003 5.62305 5.64786 5.77081 5.83662 5.99050 6.16076 6.21389 6.46745 6.98034 7.05879 7.75364 8.44261 9.26433 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.009284 B = 0.003764 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.245461 B = 7437.661337 C =10073.268600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 C -0.145 4.145 4 C -0.038 4.038 5 C -0.177 4.177 6 C 0.031 3.969 7 N -0.534 5.534 8 H 0.426 0.574 9 C -0.076 4.076 10 C 0.586 3.414 11 O -0.571 6.571 12 N -0.603 5.603 13 C 0.110 3.890 14 C -0.107 4.107 15 C -0.097 4.097 16 H 0.081 0.919 17 C -0.124 4.124 18 C 0.181 3.819 19 N -0.608 5.608 20 C -0.237 4.237 21 H 0.088 0.912 22 C -0.062 4.062 23 N -0.950 5.950 24 Si 0.971 3.029 25 H -0.270 1.270 26 H -0.300 1.300 27 H -0.279 1.279 28 C 0.149 3.851 29 H 0.005 0.995 30 C 0.103 3.897 31 C -0.117 4.117 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.196 0.804 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.059 0.941 45 H 0.108 0.892 46 H 0.064 0.936 47 H 0.084 0.916 48 H -0.002 1.002 49 H 0.026 0.974 50 H 0.246 0.754 51 H 0.082 0.918 52 H 0.090 0.910 53 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.399 9.774 -13.501 16.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 C -0.202 4.202 4 C -0.076 4.076 5 C -0.183 4.183 6 C -0.105 4.105 7 N -0.135 5.135 8 H 0.270 0.730 9 C -0.188 4.188 10 C 0.377 3.623 11 O -0.451 6.451 12 N -0.335 5.335 13 C -0.011 4.011 14 C -0.146 4.146 15 C -0.116 4.116 16 H 0.100 0.900 17 C -0.163 4.163 18 C 0.056 3.944 19 N -0.333 5.333 20 C -0.365 4.365 21 H 0.106 0.894 22 C -0.255 4.255 23 N -0.599 5.599 24 Si 0.800 3.200 25 H -0.195 1.195 26 H -0.227 1.227 27 H -0.206 1.206 28 C 0.041 3.959 29 H 0.023 0.977 30 C -0.021 4.021 31 C -0.144 4.144 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.213 0.787 42 H 0.107 0.893 43 H 0.101 0.899 44 H 0.078 0.922 45 H 0.126 0.874 46 H 0.083 0.917 47 H 0.103 0.897 48 H 0.017 0.983 49 H 0.044 0.956 50 H 0.055 0.945 51 H 0.101 0.899 52 H 0.107 0.893 53 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.563 9.551 -13.755 16.941 hybrid contribution -0.789 0.009 1.248 1.476 sum 1.774 9.561 -12.507 15.843 Atomic orbital electron populations 1.21858 0.95084 1.01565 1.01823 1.21048 0.96197 0.96034 0.97526 1.21825 1.01015 0.95252 1.02095 1.20054 1.00767 0.88384 0.98403 1.19582 0.95803 0.96419 1.06493 1.22426 1.01188 0.82886 1.03989 1.42789 1.16765 1.09519 1.44389 0.73018 1.20190 0.92457 0.94510 1.11686 1.17421 0.80163 0.83410 0.81309 1.90756 1.35286 1.86624 1.32428 1.48190 1.48796 1.06873 1.29658 1.21755 1.02466 0.80579 0.96326 1.21746 0.97564 1.00532 0.94732 1.22191 0.99625 0.95011 0.94822 0.90040 1.22608 0.99816 0.99002 0.94832 1.21346 0.96436 0.83656 0.92946 1.44384 1.57354 1.09729 1.21841 1.19318 1.21977 0.91888 1.03351 0.89440 1.25591 1.02274 0.98994 0.98677 1.70149 1.47831 1.22263 1.19645 0.85262 0.78750 0.78454 0.77577 1.19519 1.22697 1.20564 1.21044 0.93297 0.95389 0.86143 0.97727 1.22103 0.93898 1.01531 0.84540 1.21274 1.00153 0.90432 1.02548 0.92905 0.93228 0.91964 0.92583 0.92622 0.92474 0.92099 0.90334 0.91353 0.78731 0.89261 0.89857 0.92247 0.87416 0.91686 0.89724 0.98329 0.95567 0.94500 0.89937 0.89256 0.84334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.91 71.98 0.64 -1.63 16 2 C -0.09 -1.47 2.91 -10.80 -0.03 -1.51 16 3 C -0.14 -1.94 9.19 71.98 0.66 -1.28 16 4 C -0.04 -0.70 5.18 29.85 0.15 -0.54 16 5 C -0.18 -4.14 4.82 -20.12 -0.10 -4.23 16 6 C 0.03 0.70 10.43 83.48 0.87 1.57 16 7 N -0.53 -13.64 4.72 -183.62 -0.87 -14.51 16 8 H 0.43 10.18 6.31 -92.70 -0.58 9.60 16 9 C -0.08 -2.30 6.37 40.35 0.26 -2.04 16 10 C 0.59 19.57 7.60 86.45 0.66 20.23 16 11 O -0.57 -21.75 16.30 -4.35 -0.07 -21.83 16 12 N -0.60 -18.20 3.01 -823.51 -2.48 -20.68 16 13 C 0.11 2.84 6.36 86.66 0.55 3.39 16 14 C -0.11 -2.67 5.72 30.55 0.17 -2.50 16 15 C -0.10 -3.03 2.61 -10.08 -0.03 -3.06 16 16 H 0.08 2.54 8.13 -2.38 -0.02 2.52 16 17 C -0.12 -4.28 6.54 31.61 0.21 -4.08 16 18 C 0.18 8.55 5.46 86.85 0.47 9.02 16 19 N -0.61 -28.93 3.35 -669.31 -2.24 -31.17 16 20 C -0.24 -12.11 9.88 84.03 0.83 -11.28 16 21 H 0.09 4.11 7.41 -2.91 -0.02 4.09 16 22 C -0.06 -3.33 5.49 84.86 0.47 -2.86 16 23 N -0.95 -55.00 10.43 21.65 0.23 -54.78 16 24 Si 0.97 42.96 29.55 68.60 2.03 44.99 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 26 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 27 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 28 C 0.15 5.69 2.76 45.60 0.13 5.82 16 29 H 0.01 0.22 7.93 -2.39 -0.02 0.21 16 30 C 0.10 3.29 4.41 85.73 0.38 3.67 16 31 C -0.12 -3.33 10.66 22.57 0.24 -3.09 16 32 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.05 0.87 6.42 -2.39 -0.02 0.85 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.05 0.72 8.14 -2.39 -0.02 0.71 16 37 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.20 3.11 8.06 -2.91 -0.02 3.08 16 42 H 0.09 2.38 6.92 -2.38 -0.02 2.37 16 43 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.06 1.62 7.98 -2.39 -0.02 1.60 16 45 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.06 2.14 8.12 -2.38 -0.02 2.12 16 47 H 0.08 2.52 8.14 -2.38 -0.02 2.51 16 48 H 0.00 -0.08 7.77 -2.39 -0.02 -0.10 16 49 H 0.03 1.38 7.19 -2.39 -0.02 1.36 16 50 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 51 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 52 H 0.09 2.89 4.08 -2.39 -0.01 2.88 16 53 H 0.14 3.91 8.06 -2.92 -0.02 3.89 16 Total: -1.00 -66.90 404.36 3.44 -63.46 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 0.31 Total: 28.93 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 6.53 Total: 5.59 kcal Atomic # 7 Polarization: -115.78 SS G_CDS: -5.36 Total: -121.14 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.07 Total: -21.83 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -66.90 3.44 -63.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042314490.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.949 kcal (2) G-P(sol) polarization free energy of solvation -66.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds