Wall clock time and date at job start Wed Apr 1 2020 02:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47121 * 2 1 4 4 C 1.52999 * 109.47122 * 119.99883 * 2 1 3 5 5 C 1.50695 * 109.47321 * 175.00177 * 4 2 1 6 6 C 1.35452 * 126.06772 * 269.96110 * 5 4 2 7 7 N 1.35536 * 108.87098 * 179.76648 * 6 5 4 8 8 H 0.97005 * 125.67886 * 180.29668 * 7 6 5 9 9 C 1.37644 * 108.64435 * 0.43576 * 7 6 5 10 10 C 1.46683 * 126.23377 * 179.83210 * 9 7 6 11 11 O 1.21693 * 120.00020 * 157.79595 * 10 9 7 12 12 N 1.34769 * 120.00056 * 337.79417 * 10 9 7 13 13 C 1.46637 * 119.77846 * 352.99409 * 12 10 9 14 14 C 1.53887 * 110.79460 * 227.67773 * 13 12 10 15 15 C 1.51975 * 107.29335 * 308.26302 * 14 13 12 16 16 H 1.09004 * 111.56435 * 303.14709 * 15 14 13 17 17 C 1.53695 * 115.00889 * 175.44269 * 15 14 13 18 18 C 1.55294 * 101.81616 * 206.53247 * 17 15 14 19 19 N 1.48156 * 107.04559 * 22.44258 * 18 17 15 20 20 C 1.36929 * 126.39962 * 184.98315 * 19 18 17 21 21 H 1.08000 * 120.00076 * 173.08371 * 20 19 18 22 22 C 1.38811 * 120.00335 * 353.08216 * 20 19 18 23 23 N 1.31618 * 119.99694 * 5.77232 * 22 20 19 24 24 Si 1.86797 * 120.00162 * 185.77838 * 22 20 19 25 25 H 1.48500 * 109.47211 * 94.98634 * 24 22 20 26 26 H 1.48502 * 109.47129 * 214.98690 * 24 22 20 27 27 H 1.48498 * 109.47194 * 334.98633 * 24 22 20 28 28 C 1.45510 * 107.19987 * 5.00337 * 19 18 17 29 29 H 1.09002 * 108.98943 * 86.36395 * 28 19 18 30 30 C 1.47800 * 119.75471 * 173.13323 * 12 10 9 31 31 C 1.37879 * 107.53552 * 359.56866 * 9 7 6 32 32 H 1.08993 * 109.47206 * 300.00506 * 1 2 3 33 33 H 1.09009 * 109.46892 * 60.00173 * 1 2 3 34 34 H 1.08997 * 109.47340 * 179.97438 * 1 2 3 35 35 H 1.08997 * 109.47340 * 239.99990 * 2 1 3 36 36 H 1.09001 * 109.46852 * 179.97438 * 3 2 1 37 37 H 1.09002 * 109.46831 * 299.99955 * 3 2 1 38 38 H 1.08997 * 109.47022 * 59.99795 * 3 2 1 39 39 H 1.09001 * 109.47039 * 54.99926 * 4 2 1 40 40 H 1.09000 * 109.46815 * 295.00211 * 4 2 1 41 41 H 1.07995 * 125.56729 * 0.06307 * 6 5 4 42 42 H 1.09001 * 109.13175 * 107.37466 * 13 12 10 43 43 H 1.08992 * 109.21142 * 348.04106 * 13 12 10 44 44 H 1.09002 * 109.89794 * 188.80944 * 14 13 12 45 45 H 1.09010 * 109.88843 * 67.70519 * 14 13 12 46 46 H 1.09004 * 110.95740 * 324.66104 * 17 15 14 47 47 H 1.09004 * 110.96394 * 88.36113 * 17 15 14 48 48 H 1.09001 * 109.92218 * 141.79830 * 18 17 15 49 49 H 1.09001 * 109.91663 * 263.09552 * 18 17 15 50 50 H 0.97000 * 120.00140 * 180.02562 * 23 22 20 51 51 H 1.08996 * 110.06098 * 9.52830 * 30 12 10 52 52 H 1.08994 * 110.06884 * 248.06616 * 30 12 10 53 53 H 1.07995 * 126.45651 * 180.30008 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5418 -0.8293 1.1890 6 6 4.2467 -1.8474 0.6399 7 7 5.5700 -1.5862 0.7728 8 1 6.2927 -2.1530 0.4607 9 6 5.7177 -0.3842 1.4270 10 6 6.9871 0.2633 1.7749 11 8 7.0233 1.4631 1.9748 12 7 8.1132 -0.4705 1.8730 13 6 8.0399 -1.9323 1.7838 14 6 8.8433 -2.5899 2.9198 15 6 10.2338 -1.9768 2.9033 16 1 10.7158 -2.1028 1.9338 17 6 11.1580 -2.4315 4.0441 18 6 12.1187 -1.2187 4.1775 19 7 11.4184 -0.0449 3.6061 20 6 11.9409 1.2092 3.4352 21 1 11.3760 1.9620 2.9055 22 6 13.1966 1.5131 3.9429 23 7 13.9325 0.5677 4.4878 24 14 13.8419 3.2638 3.8527 25 1 13.5468 3.9664 5.1273 26 1 15.3098 3.2394 3.6293 27 1 13.1821 3.9773 2.7299 28 6 10.0713 -0.4735 3.2610 29 1 9.4319 -0.3745 4.1382 30 6 9.4131 0.2039 2.0728 31 6 4.4552 0.1032 1.6906 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8901 34 1 -0.3634 -1.0276 -0.0005 35 1 1.8933 -0.5138 -0.8899 36 1 3.1300 1.4425 0.0005 37 1 1.6766 1.9563 -0.8900 38 1 1.6766 1.9563 0.8899 39 1 1.6053 -1.7198 1.2952 40 1 1.7516 -0.1582 2.1369 41 1 3.8234 -2.7220 0.1686 42 1 8.4466 -2.2526 0.8246 43 1 6.9979 -2.2442 1.8539 44 1 8.9100 -3.6650 2.7528 45 1 8.3619 -2.3916 3.8775 46 1 10.5945 -2.5856 4.9644 47 1 11.7038 -3.3336 3.7677 48 1 12.3473 -1.0398 5.2282 49 1 13.0371 -1.4097 3.6223 50 1 14.8098 0.7800 4.8428 51 1 9.2568 1.2616 2.2847 52 1 10.0347 0.0885 1.1850 53 1 4.2166 1.0307 2.1898 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042314491.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:31 Heat of formation + Delta-G solvation = 19.052491 kcal Electronic energy + Delta-G solvation = -31056.207670 eV Core-core repulsion = 27121.331641 eV Total energy + Delta-G solvation = -3934.876029 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.60910 -41.05509 -39.52186 -37.30131 -36.88163 -34.72848 -33.03241 -32.46792 -31.41524 -30.36323 -30.03380 -27.89783 -27.14174 -26.61450 -25.64510 -23.72482 -22.92930 -21.89270 -21.55380 -21.09156 -20.86749 -20.00802 -18.76116 -18.40720 -17.46049 -16.94304 -16.66978 -16.44999 -15.97165 -15.73669 -15.63061 -15.27102 -15.13989 -14.81962 -14.77391 -14.50020 -14.37041 -14.14255 -13.99433 -13.75908 -13.60565 -13.52848 -13.18309 -13.11752 -13.01942 -12.79597 -12.76189 -12.55213 -12.31272 -12.19417 -12.03449 -11.77341 -11.74577 -11.61158 -11.60168 -11.40625 -11.38016 -11.15832 -11.07760 -10.75689 -9.90426 -9.64869 -9.02737 -8.92759 -7.91522 -5.25368 0.49342 1.40434 1.42613 1.51189 1.72224 1.78200 2.12287 2.42126 2.46196 3.27582 3.40344 3.53497 3.72592 3.88249 3.90566 4.08666 4.11191 4.17809 4.20000 4.24685 4.26050 4.34594 4.38891 4.45999 4.54792 4.56616 4.61770 4.75777 4.78816 4.83324 4.86532 4.88750 4.93607 5.04484 5.07015 5.10888 5.12029 5.17056 5.20586 5.22172 5.29287 5.35191 5.39931 5.47022 5.52671 5.55424 5.62368 5.64743 5.73362 5.86978 5.97835 6.15402 6.31853 6.58336 7.00955 7.04603 7.72467 8.39847 9.20164 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.018529 B = 0.002427 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.780550 B =11535.616021 C =12779.243833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 C -0.150 4.150 4 C -0.038 4.038 5 C -0.184 4.184 6 C 0.048 3.952 7 N -0.527 5.527 8 H 0.433 0.567 9 C -0.072 4.072 10 C 0.577 3.423 11 O -0.586 6.586 12 N -0.604 5.604 13 C 0.086 3.914 14 C -0.108 4.108 15 C -0.094 4.094 16 H 0.082 0.918 17 C -0.122 4.122 18 C 0.180 3.820 19 N -0.613 5.613 20 C -0.239 4.239 21 H 0.074 0.926 22 C -0.061 4.061 23 N -0.945 5.945 24 Si 0.970 3.030 25 H -0.290 1.290 26 H -0.289 1.289 27 H -0.272 1.272 28 C 0.147 3.853 29 H 0.003 0.997 30 C 0.130 3.870 31 C -0.115 4.115 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.041 0.959 37 H 0.051 0.949 38 H 0.048 0.952 39 H 0.090 0.910 40 H 0.060 0.940 41 H 0.215 0.785 42 H 0.097 0.903 43 H 0.110 0.890 44 H 0.121 0.879 45 H 0.060 0.940 46 H 0.067 0.933 47 H 0.090 0.910 48 H 0.003 0.997 49 H 0.019 0.981 50 H 0.248 0.752 51 H 0.055 0.945 52 H 0.072 0.928 53 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.346 -14.431 -11.116 31.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 C -0.207 4.207 4 C -0.076 4.076 5 C -0.189 4.189 6 C -0.089 4.089 7 N -0.129 5.129 8 H 0.278 0.722 9 C -0.184 4.184 10 C 0.368 3.632 11 O -0.466 6.466 12 N -0.336 5.336 13 C -0.036 4.036 14 C -0.146 4.146 15 C -0.114 4.114 16 H 0.100 0.900 17 C -0.160 4.160 18 C 0.056 3.944 19 N -0.338 5.338 20 C -0.368 4.368 21 H 0.092 0.908 22 C -0.254 4.254 23 N -0.594 5.594 24 Si 0.799 3.201 25 H -0.217 1.217 26 H -0.215 1.215 27 H -0.197 1.197 28 C 0.039 3.961 29 H 0.020 0.980 30 C 0.007 3.993 31 C -0.142 4.142 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.232 0.768 42 H 0.115 0.885 43 H 0.128 0.872 44 H 0.139 0.861 45 H 0.079 0.921 46 H 0.086 0.914 47 H 0.108 0.892 48 H 0.021 0.979 49 H 0.037 0.963 50 H 0.057 0.943 51 H 0.073 0.927 52 H 0.090 0.910 53 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -24.923 -13.774 -11.022 30.534 hybrid contribution 1.602 1.678 0.470 2.367 sum -23.321 -12.096 -10.551 28.311 Atomic orbital electron populations 1.21833 0.94433 1.02339 1.01654 1.21070 0.95740 0.95424 0.98284 1.21879 1.00594 0.97086 1.01134 1.20046 0.88367 1.01572 0.97590 1.19592 0.96253 0.96006 1.07088 1.22543 0.81467 1.01681 1.03185 1.42614 1.09074 1.16666 1.44537 0.72235 1.19830 0.93372 0.92171 1.13034 1.17764 0.83039 0.85891 0.76526 1.90804 1.85884 1.16589 1.53358 1.48229 1.05853 1.08163 1.71361 1.22498 1.02985 0.77249 1.00861 1.21775 0.92705 1.01702 0.98427 1.22199 0.96297 0.93903 0.99006 0.89957 1.22602 0.97481 0.97588 0.98307 1.21362 0.93152 0.84655 0.95259 1.44440 1.09209 1.07527 1.72655 1.19295 0.99887 0.87978 1.29638 0.90836 1.25576 0.97652 1.01322 1.00864 1.70146 1.11280 1.32009 1.45953 0.85180 0.77213 0.80017 0.77715 1.21693 1.21481 1.19674 1.21137 0.86423 0.94994 0.93549 0.98002 1.21311 0.82902 0.96742 0.98375 1.21242 0.90472 0.99882 1.02629 0.92965 0.92815 0.91479 0.90961 0.94019 0.93011 0.93311 0.89175 0.92139 0.76829 0.88482 0.87237 0.86109 0.92076 0.91422 0.89159 0.97904 0.96279 0.94275 0.92677 0.91019 0.85932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.19 71.98 0.66 -0.75 16 2 C -0.09 -1.07 2.91 -10.79 -0.03 -1.11 16 3 C -0.15 -2.52 8.92 71.98 0.64 -1.88 16 4 C -0.04 -0.47 5.18 29.85 0.15 -0.32 16 5 C -0.18 -3.03 4.78 -20.12 -0.10 -3.13 16 6 C 0.05 0.53 11.80 83.48 0.99 1.52 16 7 N -0.53 -7.68 4.73 -183.62 -0.87 -8.55 16 8 H 0.43 3.88 6.29 -92.70 -0.58 3.30 16 9 C -0.07 -1.81 6.34 40.35 0.26 -1.55 16 10 C 0.58 19.72 7.60 86.45 0.66 20.38 16 11 O -0.59 -26.07 16.33 -4.32 -0.07 -26.14 16 12 N -0.60 -18.51 3.02 -823.43 -2.48 -20.99 16 13 C 0.09 1.62 4.98 86.65 0.43 2.05 16 14 C -0.11 -2.23 5.73 30.56 0.17 -2.05 16 15 C -0.09 -2.92 2.61 -10.08 -0.03 -2.95 16 16 H 0.08 2.52 8.13 -2.38 -0.02 2.50 16 17 C -0.12 -4.17 6.54 31.62 0.21 -3.97 16 18 C 0.18 8.91 5.43 86.85 0.47 9.38 16 19 N -0.61 -32.29 3.35 -669.32 -2.24 -34.53 16 20 C -0.24 -13.95 9.89 84.03 0.83 -13.12 16 21 H 0.07 4.26 7.37 -2.91 -0.02 4.24 16 22 C -0.06 -3.58 5.49 84.86 0.47 -3.11 16 23 N -0.95 -57.92 10.49 21.65 0.23 -57.69 16 24 Si 0.97 47.95 29.56 68.60 2.03 49.97 16 25 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 26 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 27 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 28 C 0.15 6.20 2.75 45.59 0.13 6.32 16 29 H 0.00 0.12 7.94 -2.39 -0.02 0.10 16 30 C 0.13 5.15 5.66 85.73 0.49 5.64 16 31 C -0.11 -2.83 9.33 22.57 0.21 -2.62 16 32 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.04 0.88 6.41 -2.39 -0.02 0.87 16 37 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.22 0.43 8.06 -2.91 -0.02 0.40 16 42 H 0.10 1.30 8.10 -2.39 -0.02 1.28 16 43 H 0.11 1.53 4.43 -2.39 -0.01 1.52 16 44 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.06 1.43 7.99 -2.38 -0.02 1.41 16 46 H 0.07 2.19 8.12 -2.38 -0.02 2.17 16 47 H 0.09 2.59 8.14 -2.38 -0.02 2.57 16 48 H 0.00 0.15 7.59 -2.39 -0.02 0.13 16 49 H 0.02 1.04 7.45 -2.39 -0.02 1.02 16 50 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 51 H 0.05 2.60 6.75 -2.39 -0.02 2.58 16 52 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 53 H 0.12 3.43 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -80.64 404.50 3.51 -77.13 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.31 Total: 12.07 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: 6.61 Total: 8.73 kcal Atomic # 7 Polarization: -116.40 SS G_CDS: -5.37 Total: -121.76 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.07 Total: -26.14 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.03 Total: 49.97 kcal Total: -80.64 3.51 -77.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042314491.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.180 kcal (2) G-P(sol) polarization free energy of solvation -80.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds