Wall clock time and date at job start Wed Apr 1 2020 04:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46898 * 109.47047 * 64.42341 * 3 2 1 5 5 C 1.46846 * 110.99965 * 190.00205 * 4 3 2 6 6 C 1.53036 * 109.52549 * 174.16327 * 5 4 3 7 7 C 1.53117 * 109.27862 * 59.17330 * 6 5 4 8 8 C 1.50699 * 109.52226 * 182.37802 * 7 6 5 9 9 O 1.21282 * 119.99820 * 24.69487 * 8 7 6 10 10 N 1.34772 * 120.00145 * 204.69545 * 8 7 6 11 11 C 1.46596 * 119.75565 * 4.37427 * 10 8 7 12 12 C 1.53499 * 110.93256 * 227.68735 * 11 10 8 13 13 C 1.51984 * 107.36547 * 308.44012 * 12 11 10 14 14 H 1.08996 * 111.01450 * 303.33891 * 13 12 11 15 15 C 1.53699 * 115.00155 * 175.29898 * 13 12 11 16 16 C 1.55298 * 101.81363 * 206.54028 * 15 13 12 17 17 N 1.47266 * 106.87915 * 21.82952 * 16 15 13 18 18 C 1.36931 * 125.92166 * 185.57320 * 17 16 15 19 19 H 1.07996 * 120.00257 * 185.41427 * 18 17 16 20 20 C 1.38815 * 119.99916 * 5.41046 * 18 17 16 21 21 N 1.31619 * 120.00152 * 354.78847 * 20 18 17 22 22 Si 1.86803 * 119.99973 * 174.78143 * 20 18 17 23 23 H 1.48494 * 109.46948 * 95.00194 * 22 20 18 24 24 H 1.48502 * 109.47247 * 215.00545 * 22 20 18 25 25 H 1.48502 * 109.46937 * 335.00346 * 22 20 18 26 26 C 1.45500 * 107.67753 * 6.01157 * 17 16 15 27 27 H 1.09000 * 109.56955 * 85.39348 * 26 17 16 28 28 C 1.47806 * 119.75551 * 184.65239 * 10 8 7 29 29 C 1.53114 * 109.16580 * 302.34923 * 7 6 5 30 30 C 1.46844 * 110.99985 * 65.78889 * 4 3 2 31 31 H 4.40888 * 5.52165 * 180.02562 * 4 1 2 32 32 H 1.08997 * 109.47079 * 304.42379 * 3 2 1 33 33 H 1.08995 * 109.46793 * 184.42221 * 3 2 1 34 34 H 1.08996 * 109.46175 * 54.14018 * 5 4 3 35 35 H 1.09008 * 109.45937 * 294.17772 * 5 4 3 36 36 H 1.08996 * 109.50236 * 299.23506 * 6 5 4 37 37 H 1.08999 * 109.53852 * 179.13888 * 6 5 4 38 38 H 1.09000 * 109.52050 * 62.25617 * 7 6 5 39 39 H 1.09000 * 109.22817 * 348.08142 * 11 10 8 40 40 H 1.09001 * 109.23175 * 107.44562 * 11 10 8 41 41 H 1.09000 * 109.96930 * 188.90696 * 12 11 10 42 42 H 1.08998 * 109.80261 * 67.87823 * 12 11 10 43 43 H 1.08999 * 110.96264 * 324.66964 * 15 13 12 44 44 H 1.09001 * 110.95590 * 88.37277 * 15 13 12 45 45 H 1.08995 * 109.92000 * 141.79906 * 16 15 13 46 46 H 1.09000 * 109.91861 * 263.09916 * 16 15 13 47 47 H 0.96999 * 119.99763 * 179.97438 * 21 20 18 48 48 H 1.09006 * 110.06163 * 247.93879 * 28 10 8 49 49 H 1.08994 * 110.06029 * 9.39201 * 28 10 8 50 50 H 1.08995 * 109.50650 * 177.59576 * 29 7 6 51 51 H 1.09000 * 109.50360 * 297.71511 * 29 7 6 52 52 H 1.08998 * 109.46754 * 305.85305 * 30 4 3 53 53 H 1.09001 * 109.46281 * 65.82546 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1359 -0.5970 -1.2493 5 6 4.5843 -0.8311 -1.1881 6 6 5.0342 -1.5841 -2.4421 7 6 4.6839 -0.7565 -3.6817 8 6 5.0716 -1.5190 -4.9224 9 8 5.1484 -2.7289 -4.8913 10 7 5.3331 -0.8563 -6.0665 11 6 5.3328 0.6096 -6.0745 12 6 4.5151 1.1514 -7.2552 13 6 5.0231 0.4644 -8.5121 14 1 6.0940 0.6232 -8.6387 15 6 4.2438 0.7969 -9.7944 16 6 4.4890 -0.4731 -10.6539 17 7 4.8480 -1.5565 -9.7232 18 6 5.2483 -2.8179 -10.0748 19 1 5.4053 -3.5667 -9.3126 20 6 5.4523 -3.1341 -11.4110 21 7 5.1631 -2.2551 -12.3469 22 14 6.1374 -4.8073 -11.8807 23 1 5.0176 -5.7286 -12.2005 24 1 7.0172 -4.6662 -13.0687 25 1 6.9222 -5.3571 -10.7462 26 6 4.6901 -1.0466 -8.3696 27 1 3.6532 -1.1632 -8.0543 28 6 5.6118 -1.6130 -7.3052 29 6 3.1769 -0.4857 -3.6960 30 6 2.7809 0.2355 -2.4056 31 1 -1.0500 0.0001 -0.0002 32 1 3.0096 -0.5801 0.8477 33 1 3.0088 1.0254 0.0792 34 1 4.8193 -1.4241 -0.3043 35 1 5.1047 0.1252 -1.1324 36 1 4.5246 -2.5464 -2.4911 37 1 6.1116 -1.7445 -2.4041 38 1 5.2237 0.1900 -3.6522 39 1 4.9004 0.9737 -5.1425 40 1 6.3587 0.9684 -6.1578 41 1 4.6531 2.2293 -7.3402 42 1 3.4594 0.9232 -7.1088 43 1 3.1823 0.9258 -9.5832 44 1 4.6529 1.6825 -10.2807 45 1 3.5846 -0.7280 -11.2062 46 1 5.3134 -0.2999 -11.3456 47 1 5.3061 -2.4760 -13.2805 48 1 6.6523 -1.4767 -7.6004 49 1 5.4026 -2.6716 -7.1517 50 1 2.9275 0.1392 -4.5535 51 1 2.6380 -1.4307 -3.7647 52 1 1.7061 0.4170 -2.4062 53 1 3.3097 1.1867 -2.3443 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042367811.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:08 Heat of formation + Delta-G solvation = 34.982300 kcal Electronic energy + Delta-G solvation = -31484.627606 eV Core-core repulsion = 27550.442345 eV Total energy + Delta-G solvation = -3934.185261 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.78207 -40.29603 -39.21916 -36.90703 -35.54230 -34.66480 -33.21286 -32.83906 -31.81082 -30.99073 -30.19683 -28.23309 -26.55418 -25.71018 -24.17149 -24.10141 -23.55766 -21.81760 -21.49419 -20.88389 -19.78041 -18.98964 -18.74181 -18.02979 -17.29284 -16.86487 -16.59989 -16.32213 -16.04412 -15.84556 -15.71381 -15.60885 -15.40049 -14.85992 -14.62703 -14.44553 -14.32763 -13.99205 -13.85114 -13.82541 -13.62602 -13.46901 -13.16004 -13.08406 -12.89631 -12.76581 -12.61047 -12.44819 -12.12724 -12.09203 -11.99822 -11.86292 -11.76303 -11.54479 -11.50090 -11.33379 -11.22121 -11.02086 -11.00786 -10.71732 -10.63998 -9.67191 -9.26685 -8.93013 -7.88975 -5.24052 1.41406 1.41854 1.51970 1.58639 1.79712 1.94398 1.97257 2.46873 3.11411 3.27900 3.40620 3.52834 3.55890 3.76199 3.80962 3.85128 3.96124 3.97840 4.14212 4.22172 4.27989 4.29103 4.34449 4.39254 4.43242 4.55016 4.56476 4.59914 4.62975 4.67361 4.72569 4.78881 4.83500 4.87123 4.90820 4.94272 4.96744 5.07424 5.12166 5.15574 5.16335 5.20424 5.26553 5.36784 5.40058 5.50169 5.62414 5.65676 5.79140 6.07459 6.13585 6.19013 6.45420 6.76211 7.07296 7.17947 7.75819 8.40875 9.20880 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.017040 B = 0.002514 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.805915 B =11135.581576 C =11766.133862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.209 4.209 3 C 0.163 3.837 4 N -0.559 5.559 5 C 0.067 3.933 6 C -0.099 4.099 7 C -0.095 4.095 8 C 0.508 3.492 9 O -0.593 6.593 10 N -0.604 5.604 11 C 0.100 3.900 12 C -0.111 4.111 13 C -0.095 4.095 14 H 0.074 0.926 15 C -0.121 4.121 16 C 0.178 3.822 17 N -0.613 5.613 18 C -0.239 4.239 19 H 0.071 0.929 20 C -0.060 4.060 21 N -0.946 5.946 22 Si 0.970 3.030 23 H -0.289 1.289 24 H -0.288 1.288 25 H -0.273 1.273 26 C 0.148 3.852 27 H 0.008 0.992 28 C 0.131 3.869 29 C -0.100 4.100 30 C 0.066 3.934 31 H 0.238 0.762 32 H 0.108 0.892 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.062 0.938 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.126 0.874 39 H 0.119 0.881 40 H 0.083 0.917 41 H 0.115 0.885 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.085 0.915 45 H -0.006 1.006 46 H 0.027 0.973 47 H 0.248 0.752 48 H 0.061 0.939 49 H 0.050 0.950 50 H 0.086 0.914 51 H 0.045 0.955 52 H 0.073 0.927 53 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.884 15.448 25.667 30.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.210 4.210 3 C 0.037 3.963 4 N -0.285 5.285 5 C -0.060 4.060 6 C -0.137 4.137 7 C -0.116 4.116 8 C 0.298 3.702 9 O -0.473 6.473 10 N -0.337 5.337 11 C -0.021 4.021 12 C -0.149 4.149 13 C -0.115 4.115 14 H 0.093 0.907 15 C -0.159 4.159 16 C 0.053 3.947 17 N -0.338 5.338 18 C -0.368 4.368 19 H 0.089 0.911 20 C -0.253 4.253 21 N -0.595 5.595 22 Si 0.798 3.202 23 H -0.216 1.216 24 H -0.214 1.214 25 H -0.198 1.198 26 C 0.041 3.959 27 H 0.025 0.975 28 C 0.007 3.993 29 C -0.139 4.139 30 C -0.061 4.061 31 H 0.254 0.746 32 H 0.126 0.874 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.144 0.856 39 H 0.137 0.863 40 H 0.101 0.899 41 H 0.133 0.867 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.104 0.896 45 H 0.012 0.988 46 H 0.046 0.954 47 H 0.057 0.943 48 H 0.080 0.920 49 H 0.069 0.931 50 H 0.104 0.896 51 H 0.064 0.936 52 H 0.092 0.908 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.972 14.261 25.430 29.307 hybrid contribution 0.304 -1.115 -1.237 1.693 sum -2.668 13.146 24.193 27.663 Atomic orbital electron populations 1.25646 0.96924 1.00572 0.99000 1.23416 0.95224 1.00786 1.01537 1.19077 0.84435 0.99878 0.92875 1.61788 1.15079 1.49006 1.02595 1.22068 0.85901 1.00176 0.97899 1.21418 1.01180 0.98576 0.92515 1.21448 0.98786 1.00390 0.90971 1.21481 0.75389 0.87733 0.85592 1.90672 1.54231 1.16912 1.85525 1.48396 1.69057 1.08268 1.07964 1.22073 1.02107 0.76914 1.01029 1.21760 0.99746 1.01651 0.91781 1.22194 0.99866 0.94110 0.95321 0.90734 1.22591 1.00067 0.97311 0.95954 1.21263 0.96522 0.85883 0.91031 1.44264 1.78586 1.09827 1.01145 1.19281 1.37587 0.87942 0.92029 0.91115 1.25563 1.02342 1.01681 0.95714 1.70162 1.54369 1.35638 0.99308 0.85193 0.77933 0.79513 0.77544 1.21566 1.21361 1.19818 1.21138 0.94991 0.94563 0.85239 0.97485 1.21209 0.98672 0.95577 0.83875 1.21499 0.92506 1.01129 0.98732 1.22025 1.01183 0.94298 0.88613 0.74568 0.87378 0.90579 0.89058 0.91948 0.93099 0.90745 0.85621 0.86282 0.89901 0.86680 0.91395 0.91160 0.89606 0.98761 0.95424 0.94283 0.92033 0.93128 0.89554 0.93574 0.90810 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.95 19.25 74.32 1.43 -1.52 16 2 C -0.21 -3.34 12.34 31.13 0.38 -2.95 16 3 C 0.16 1.94 5.46 84.50 0.46 2.40 16 4 N -0.56 -8.48 4.63 -907.47 -4.21 -12.69 16 5 C 0.07 0.84 5.46 86.33 0.47 1.31 16 6 C -0.10 -1.91 4.95 30.65 0.15 -1.75 16 7 C -0.09 -1.82 1.73 -11.46 -0.02 -1.84 16 8 C 0.51 15.44 6.79 87.66 0.60 16.04 16 9 O -0.59 -24.45 15.44 -3.04 -0.05 -24.49 16 10 N -0.60 -17.66 3.02 -819.57 -2.47 -20.13 16 11 C 0.10 1.83 6.07 86.53 0.53 2.35 16 12 C -0.11 -2.22 5.71 30.43 0.17 -2.04 16 13 C -0.10 -2.99 2.61 -10.07 -0.03 -3.01 16 14 H 0.07 2.42 8.13 -2.39 -0.02 2.40 16 15 C -0.12 -4.19 6.54 31.62 0.21 -3.98 16 16 C 0.18 8.85 5.45 87.02 0.47 9.33 16 17 N -0.61 -32.33 3.31 -671.61 -2.22 -34.55 16 18 C -0.24 -14.01 9.83 84.04 0.83 -13.18 16 19 H 0.07 4.13 7.52 -2.91 -0.02 4.11 16 20 C -0.06 -3.52 5.48 84.86 0.47 -3.05 16 21 N -0.95 -57.98 10.38 21.65 0.22 -57.75 16 22 Si 0.97 47.84 29.56 68.60 2.03 49.86 16 23 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 24 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 25 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 26 C 0.15 6.20 2.78 45.60 0.13 6.33 16 27 H 0.01 0.34 7.94 -2.39 -0.02 0.32 16 28 C 0.13 5.17 5.69 85.73 0.49 5.66 16 29 C -0.10 -1.85 5.21 30.65 0.16 -1.69 16 30 C 0.07 0.94 5.30 86.33 0.46 1.39 16 31 H 0.24 1.91 7.80 -4.42 -0.03 1.87 16 32 H 0.11 1.02 7.99 -2.39 -0.02 1.00 16 33 H 0.08 0.62 8.12 -2.39 -0.02 0.60 16 34 H 0.09 0.98 8.01 -2.39 -0.02 0.96 16 35 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 36 H 0.05 1.35 7.79 -2.39 -0.02 1.33 16 37 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.13 1.51 6.34 -2.39 -0.02 1.50 16 39 H 0.12 1.31 4.92 -2.39 -0.01 1.30 16 40 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.07 1.41 7.99 -2.39 -0.02 1.39 16 43 H 0.07 2.23 8.12 -2.39 -0.02 2.21 16 44 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 45 H -0.01 -0.33 7.90 -2.39 -0.02 -0.35 16 46 H 0.03 1.53 6.97 -2.39 -0.02 1.52 16 47 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 48 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 49 H 0.05 2.38 6.85 -2.39 -0.02 2.36 16 50 H 0.09 1.39 7.66 -2.39 -0.02 1.37 16 51 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 52 H 0.07 1.15 7.11 -2.39 -0.02 1.14 16 53 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -80.17 404.94 1.53 -78.64 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 0.87 Total: 11.33 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 7.35 Total: 9.78 kcal Atomic # 7 Polarization: -116.44 SS G_CDS: -8.67 Total: -125.12 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.05 Total: -24.49 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 2.03 Total: 49.86 kcal Total: -80.17 1.53 -78.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042367811.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.618 kcal (2) G-P(sol) polarization free energy of solvation -80.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds