Wall clock time and date at job start Wed Apr 1 2020 04:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46969 * 2 1 4 4 N 1.46501 * 109.46923 * 119.99826 * 2 1 3 5 5 C 1.46497 * 119.99966 * 304.67849 * 4 2 1 6 6 C 1.39040 * 119.99916 * 124.68149 * 4 2 1 7 7 C 1.39221 * 119.93348 * 174.17346 * 6 4 2 8 8 C 1.37607 * 120.07019 * 179.97438 * 7 6 4 9 9 C 1.39792 * 119.93328 * 0.02562 * 8 7 6 10 10 C 1.47520 * 120.07274 * 179.97438 * 9 8 7 11 11 O 1.21599 * 119.99353 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00274 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99905 * 179.97438 * 12 10 9 14 14 C 1.53005 * 110.91461 * 56.10145 * 13 12 10 15 15 C 1.55161 * 111.00458 * 180.02562 * 13 12 10 16 16 C 1.54326 * 102.94173 * 82.57509 * 15 13 12 17 17 N 1.47023 * 107.26717 * 22.19248 * 16 15 13 18 18 C 1.36942 * 125.64322 * 181.02010 * 17 16 15 19 19 H 1.08005 * 119.99428 * 180.02562 * 18 17 16 20 20 C 1.38812 * 120.00150 * 0.03163 * 18 17 16 21 21 N 1.31615 * 120.00194 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99828 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47320 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.47030 * 299.99340 * 22 20 18 25 25 H 1.48500 * 109.47746 * 59.99221 * 22 20 18 26 26 C 1.47420 * 108.70615 * 1.28784 * 17 16 15 27 27 C 1.39796 * 119.86032 * 0.25191 * 9 8 7 28 28 C 1.37617 * 119.92991 * 359.44366 * 27 9 8 29 29 H 1.09002 * 109.47460 * 300.00331 * 1 2 3 30 30 H 1.09003 * 109.46943 * 60.00224 * 1 2 3 31 31 H 1.08992 * 109.47461 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46754 * 239.99882 * 2 1 3 33 33 H 1.09004 * 109.46862 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47105 * 299.99676 * 3 2 1 35 35 H 1.08996 * 109.47157 * 59.99961 * 3 2 1 36 36 H 1.08997 * 109.47479 * 269.99777 * 5 4 2 37 37 H 1.09000 * 109.47238 * 30.00495 * 5 4 2 38 38 H 1.09007 * 109.46997 * 149.99935 * 5 4 2 39 39 H 1.08002 * 119.95921 * 359.97438 * 7 6 4 40 40 H 1.08002 * 120.03195 * 179.97438 * 8 7 6 41 41 H 0.96993 * 119.99707 * 0.02562 * 12 10 9 42 42 H 1.09000 * 109.46940 * 183.89980 * 14 13 12 43 43 H 1.08997 * 109.47112 * 303.90210 * 14 13 12 44 44 H 1.09002 * 109.47138 * 63.90122 * 14 13 12 45 45 H 1.09001 * 110.71524 * 324.21471 * 15 13 12 46 46 H 1.08999 * 110.71815 * 200.93863 * 15 13 12 47 47 H 1.08999 * 109.88369 * 262.78082 * 16 15 13 48 48 H 1.08995 * 109.87886 * 141.60894 * 16 15 13 49 49 H 0.96991 * 120.00055 * 180.02562 * 21 20 18 50 50 H 1.09003 * 110.36637 * 94.48477 * 26 17 16 51 51 H 1.09006 * 110.36581 * 216.80114 * 26 17 16 52 52 H 1.08005 * 120.03458 * 179.74934 * 27 9 8 53 53 H 1.08006 * 119.96166 * 180.29430 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.5819 -0.2526 2.5243 6 6 2.8960 -1.7616 1.0710 7 6 3.4540 -2.3392 2.2082 8 6 4.3226 -3.3997 2.0876 9 6 4.6449 -3.8967 0.8215 10 6 5.5761 -5.0331 0.6885 11 8 6.0645 -5.5381 1.6811 12 7 5.8856 -5.5116 -0.5328 13 6 6.8108 -6.6397 -0.6648 14 6 6.3229 -7.8437 0.1437 15 6 7.0184 -7.0174 -2.1553 16 6 8.0900 -6.0093 -2.6213 17 7 8.8034 -5.5455 -1.4224 18 6 9.8189 -4.6269 -1.4034 19 1 10.2807 -4.3518 -0.4666 20 6 10.2545 -4.0493 -2.5881 21 7 9.6920 -4.3849 -3.7297 22 14 11.6402 -2.7969 -2.5623 23 1 11.9156 -2.3347 -3.9463 24 1 11.2442 -1.6379 -1.7226 25 1 12.8627 -3.4226 -1.9973 26 6 8.2489 -6.2377 -0.2448 27 6 4.0875 -3.3109 -0.3189 28 6 3.2146 -2.2547 -0.1914 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 2.2704 0.5032 2.9021 37 1 0.5796 0.1704 2.4562 38 1 1.5708 -1.1057 3.2028 39 1 3.2048 -1.9544 3.1862 40 1 4.7554 -3.8469 2.9703 41 1 5.4962 -5.1085 -1.3245 42 1 7.0609 -8.6437 0.0853 43 1 6.1859 -7.5509 1.1846 44 1 5.3743 -8.1941 -0.2631 45 1 6.0945 -6.8860 -2.7186 46 1 7.3850 -8.0398 -2.2466 47 1 7.6131 -5.1648 -3.1188 48 1 8.7872 -6.4978 -3.3019 49 1 9.9966 -3.9816 -4.5575 50 1 8.8403 -7.1233 -0.0121 51 1 8.2193 -5.5644 0.6120 52 1 4.3378 -3.6901 -1.2987 53 1 2.7800 -1.8048 -1.0718 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046870751.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:24 Heat of formation + Delta-G solvation = 10.771104 kcal Electronic energy + Delta-G solvation = -30972.878974 eV Core-core repulsion = 27037.643837 eV Total energy + Delta-G solvation = -3935.235137 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.45440 -40.49957 -38.92459 -37.66746 -35.64103 -34.04785 -33.36805 -32.00107 -31.82908 -30.51654 -30.01169 -28.08884 -27.50183 -27.40995 -25.49326 -24.40916 -23.22817 -22.33136 -21.86334 -20.62874 -20.28970 -19.36010 -18.76699 -17.93059 -17.18682 -16.74763 -16.49053 -16.03608 -15.97344 -15.67109 -15.55277 -15.46314 -15.11530 -14.87688 -14.60401 -14.41915 -14.18600 -13.88696 -13.86719 -13.60545 -13.48043 -13.41232 -13.31066 -13.13732 -12.98202 -12.82932 -12.78746 -12.74011 -12.68475 -12.20966 -12.11771 -12.04379 -11.95825 -11.92509 -11.68452 -11.56350 -11.44673 -10.80877 -10.70662 -10.55492 -9.97168 -9.93868 -8.85557 -8.25576 -7.84898 -5.18518 0.12337 0.49889 1.43067 1.46087 1.52493 2.02075 2.10719 2.34060 2.48737 3.02757 3.32830 3.59441 3.70690 3.71746 3.86541 4.00015 4.03045 4.06789 4.15431 4.21740 4.29131 4.31942 4.41024 4.52248 4.64225 4.65412 4.68765 4.71793 4.74589 4.78596 4.84202 4.87415 4.88367 4.93291 4.97203 4.98256 5.03505 5.08421 5.10866 5.24587 5.27175 5.35773 5.38789 5.40416 5.42523 5.55415 5.66375 5.72783 5.77535 5.82071 6.20636 6.31918 6.48244 6.73002 7.12478 7.40067 7.77918 8.42812 9.24768 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.010414 B = 0.002934 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.151544 B = 9542.347724 C =11020.562353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.128 3.872 3 C -0.160 4.160 4 N -0.618 5.618 5 C 0.081 3.919 6 C 0.243 3.757 7 C -0.211 4.211 8 C -0.020 4.020 9 C -0.220 4.220 10 C 0.561 3.439 11 O -0.582 6.582 12 N -0.698 5.698 13 C 0.167 3.833 14 C -0.143 4.143 15 C -0.129 4.129 16 C 0.186 3.814 17 N -0.620 5.620 18 C -0.243 4.243 19 H 0.066 0.934 20 C -0.058 4.058 21 N -0.944 5.944 22 Si 0.974 3.026 23 H -0.287 1.287 24 H -0.282 1.282 25 H -0.280 1.280 26 C 0.130 3.870 27 C -0.033 4.033 28 C -0.214 4.214 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.042 0.958 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.146 0.854 40 H 0.124 0.876 41 H 0.404 0.596 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.096 0.904 46 H 0.092 0.908 47 H 0.018 0.982 48 H 0.010 0.990 49 H 0.248 0.752 50 H 0.026 0.974 51 H 0.023 0.977 52 H 0.132 0.868 53 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.107 7.415 7.314 26.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.026 3.974 3 C -0.218 4.218 4 N -0.326 5.326 5 C -0.061 4.061 6 C 0.137 3.863 7 C -0.234 4.234 8 C -0.040 4.040 9 C -0.225 4.225 10 C 0.351 3.649 11 O -0.464 6.464 12 N -0.348 5.348 13 C 0.080 3.920 14 C -0.201 4.201 15 C -0.168 4.168 16 C 0.062 3.938 17 N -0.346 5.346 18 C -0.373 4.373 19 H 0.084 0.916 20 C -0.251 4.251 21 N -0.593 5.593 22 Si 0.802 3.198 23 H -0.213 1.213 24 H -0.208 1.208 25 H -0.206 1.206 26 C 0.004 3.996 27 C -0.053 4.053 28 C -0.236 4.236 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.072 0.928 32 H 0.109 0.891 33 H 0.061 0.939 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.164 0.836 40 H 0.142 0.858 41 H 0.240 0.760 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.115 0.885 46 H 0.110 0.890 47 H 0.037 0.963 48 H 0.028 0.972 49 H 0.057 0.943 50 H 0.044 0.956 51 H 0.041 0.959 52 H 0.150 0.850 53 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -23.792 7.354 7.863 26.115 hybrid contribution 1.286 0.839 -0.472 1.606 sum -22.506 8.192 7.392 25.065 Atomic orbital electron populations 1.22131 0.93538 1.02408 1.03459 1.21309 0.95194 0.93167 0.87776 1.22157 1.00779 0.95620 1.03268 1.46739 1.47127 1.31429 1.07297 1.21834 1.00778 1.00540 0.82937 1.18120 0.87895 0.86596 0.93664 1.20745 1.03474 1.00702 0.98432 1.21002 0.93312 0.93466 0.96181 1.19666 1.05791 1.01488 0.95538 1.18518 0.80633 0.82833 0.82893 1.90647 1.55925 1.61435 1.38410 1.45679 1.46428 1.34487 1.08189 1.21372 0.87820 0.86461 0.96323 1.21958 1.01881 0.95538 1.00768 1.23115 0.99967 1.00332 0.93343 1.20939 0.91275 0.93677 0.87954 1.44672 1.39822 1.47284 1.02849 1.19280 1.09411 1.15217 0.93349 0.91563 1.25510 1.02306 1.02295 0.95035 1.70131 1.44897 1.46990 0.97308 0.85230 0.79220 0.78931 0.76410 1.21290 1.20849 1.20635 1.22028 0.92866 0.94813 0.89941 1.21172 0.92910 0.93795 0.97421 1.20817 1.04983 1.01051 0.96714 0.91426 0.90090 0.92783 0.89116 0.93917 0.90149 0.91734 0.92953 0.89364 0.90820 0.83627 0.85839 0.75984 0.90819 0.91958 0.90712 0.88512 0.88952 0.96333 0.97215 0.94273 0.95636 0.95868 0.84977 0.83586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.08 71.98 0.65 -0.69 16 2 C 0.13 1.57 3.19 44.99 0.14 1.72 16 3 C -0.16 -1.81 9.26 71.98 0.67 -1.14 16 4 N -0.62 -9.54 2.88 -698.09 -2.01 -11.55 16 5 C 0.08 0.88 9.28 127.77 1.19 2.06 16 6 C 0.24 5.16 6.54 38.47 0.25 5.41 16 7 C -0.21 -4.82 9.13 22.36 0.20 -4.62 16 8 C -0.02 -0.57 9.58 22.50 0.22 -0.35 16 9 C -0.22 -6.96 5.88 -20.08 -0.12 -7.07 16 10 C 0.56 21.00 7.14 86.69 0.62 21.62 16 11 O -0.58 -25.07 13.17 -4.03 -0.05 -25.12 16 12 N -0.70 -24.65 5.14 -419.43 -2.15 -26.81 16 13 C 0.17 6.18 0.82 5.07 0.00 6.19 16 14 C -0.14 -4.49 8.59 71.98 0.62 -3.87 16 15 C -0.13 -4.58 5.97 31.78 0.19 -4.39 16 16 C 0.19 9.14 5.36 86.73 0.47 9.61 16 17 N -0.62 -33.61 3.39 -691.55 -2.35 -35.96 16 18 C -0.24 -14.53 10.28 84.03 0.86 -13.67 16 19 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 20 C -0.06 -3.41 5.49 84.86 0.47 -2.94 16 21 N -0.94 -56.95 10.31 21.65 0.22 -56.73 16 22 Si 0.97 47.49 29.55 68.60 2.03 49.51 16 23 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 24 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 25 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 26 C 0.13 6.10 6.18 86.93 0.54 6.64 16 27 C -0.03 -0.89 9.53 22.50 0.21 -0.67 16 28 C -0.21 -4.77 9.29 22.36 0.21 -4.56 16 29 H 0.07 0.47 6.53 -2.39 -0.02 0.46 16 30 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.09 1.19 5.28 -2.39 -0.01 1.17 16 33 H 0.04 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.06 0.64 7.79 -2.39 -0.02 0.62 16 36 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.09 0.62 6.19 -2.39 -0.01 0.61 16 38 H 0.07 0.76 6.44 -2.38 -0.02 0.75 16 39 H 0.15 2.59 6.28 -2.91 -0.02 2.57 16 40 H 0.12 3.68 7.64 -2.91 -0.02 3.66 16 41 H 0.40 12.74 6.53 -92.71 -0.61 12.13 16 42 H 0.07 2.11 8.07 -2.39 -0.02 2.09 16 43 H 0.06 2.22 5.91 -2.39 -0.01 2.20 16 44 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.10 2.82 8.09 -2.39 -0.02 2.80 16 46 H 0.09 2.95 8.04 -2.39 -0.02 2.93 16 47 H 0.02 0.99 7.38 -2.39 -0.02 0.97 16 48 H 0.01 0.53 7.50 -2.39 -0.02 0.51 16 49 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 50 H 0.03 1.20 7.99 -2.39 -0.02 1.18 16 51 H 0.02 1.20 6.88 -2.38 -0.02 1.18 16 52 H 0.13 3.17 6.39 -2.91 -0.02 3.15 16 53 H 0.15 2.59 5.72 -2.91 -0.02 2.57 16 Total: -1.00 -75.16 405.98 3.38 -71.77 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: 0.31 Total: 25.62 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 7.39 Total: 9.26 kcal Atomic # 7 Polarization: -124.76 SS G_CDS: -6.29 Total: -131.05 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.05 Total: -25.12 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.51 kcal Total: -75.16 3.38 -71.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046870751.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.545 kcal (2) G-P(sol) polarization free energy of solvation -75.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds