Wall clock time and date at job start Wed Apr 1 2020 04:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47343 * 2 1 4 4 N 1.46502 * 109.47138 * 180.02562 * 3 2 1 5 5 C 1.46502 * 119.99577 * 270.00309 * 4 3 2 6 6 C 1.39043 * 120.00295 * 89.99759 * 4 3 2 7 7 C 1.39219 * 119.93335 * 180.02562 * 6 4 3 8 8 C 1.37607 * 120.06656 * 180.28107 * 7 6 4 9 9 C 1.39788 * 119.93359 * 359.47085 * 8 7 6 10 10 C 1.47523 * 120.07129 * 180.22915 * 9 8 7 11 11 O 1.21600 * 120.00137 * 180.27200 * 10 9 8 12 12 N 1.34772 * 119.99789 * 0.28121 * 10 9 8 13 13 C 1.46510 * 119.99981 * 179.97438 * 12 10 9 14 14 C 1.52996 * 110.63938 * 300.69725 * 13 12 10 15 15 C 1.55157 * 110.71830 * 177.55426 * 13 12 10 16 16 C 1.55392 * 101.36734 * 277.04269 * 15 13 12 17 17 N 1.47420 * 104.87325 * 323.02024 * 16 15 13 18 18 C 1.36939 * 125.64815 * 204.09835 * 17 16 15 19 19 H 1.08000 * 120.00046 * 180.02562 * 18 17 16 20 20 C 1.38811 * 120.00012 * 0.03580 * 18 17 16 21 21 N 1.31624 * 119.99854 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00148 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46935 * 90.00520 * 22 20 18 24 24 H 1.48501 * 109.47233 * 210.00381 * 22 20 18 25 25 H 1.48500 * 109.47176 * 330.00763 * 22 20 18 26 26 C 1.47031 * 108.70583 * 24.13204 * 17 16 15 27 27 C 1.39800 * 119.86114 * 0.50619 * 9 8 7 28 28 C 1.37604 * 119.92931 * 359.75254 * 27 9 8 29 29 H 1.09007 * 109.47119 * 59.99543 * 1 2 3 30 30 H 1.09000 * 109.47564 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46997 * 300.00197 * 1 2 3 32 32 H 1.09005 * 109.46997 * 239.99803 * 2 1 3 33 33 H 1.08998 * 109.46997 * 120.00694 * 2 1 3 34 34 H 1.09000 * 109.46800 * 60.00110 * 3 2 1 35 35 H 1.08993 * 109.47202 * 300.00134 * 3 2 1 36 36 H 1.09001 * 109.47056 * 269.99412 * 5 4 3 37 37 H 1.08998 * 109.47731 * 30.00178 * 5 4 3 38 38 H 1.08998 * 109.47117 * 150.00170 * 5 4 3 39 39 H 1.08002 * 119.96206 * 359.97438 * 7 6 4 40 40 H 1.08004 * 120.03014 * 179.72470 * 8 7 6 41 41 H 0.96998 * 120.00115 * 359.97438 * 12 10 9 42 42 H 1.09004 * 109.47108 * 59.30033 * 14 13 12 43 43 H 1.08998 * 109.46920 * 179.29939 * 14 13 12 44 44 H 1.08994 * 109.47036 * 299.29958 * 14 13 12 45 45 H 1.08996 * 111.00165 * 35.21459 * 15 13 12 46 46 H 1.09001 * 111.00123 * 159.06465 * 15 13 12 47 47 H 1.08992 * 110.34408 * 204.17087 * 16 15 13 48 48 H 1.09001 * 110.34563 * 81.87223 * 16 15 13 49 49 H 0.96998 * 119.99824 * 179.97438 * 21 20 18 50 50 H 1.09005 * 109.87775 * 239.52401 * 26 17 16 51 51 H 1.09001 * 109.87962 * 118.35688 * 26 17 16 52 52 H 1.07997 * 120.03216 * 179.76668 * 27 9 8 53 53 H 1.08004 * 119.96666 * 180.02562 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.2380 1.4421 1.2679 6 6 4.1999 1.4425 -1.2050 7 6 5.5921 1.4419 -1.2039 8 6 6.2824 1.4479 -2.3943 9 6 5.5845 1.4433 -3.6054 10 6 6.3216 1.4445 -4.8833 11 8 5.7131 1.4456 -5.9362 12 7 7.6693 1.4444 -4.8839 13 6 8.4013 1.4450 -6.1530 14 6 8.0375 0.2144 -6.9861 15 6 9.9316 1.5066 -5.9039 16 6 10.1478 3.0320 -5.7018 17 7 9.2206 3.6747 -6.6507 18 6 9.3583 4.9332 -7.1728 19 1 8.6210 5.3149 -7.8635 20 6 10.4457 5.7181 -6.8145 21 7 11.3446 5.2525 -5.9733 22 14 10.6339 7.4344 -7.5273 23 1 9.9517 8.4145 -6.6445 24 1 12.0761 7.7750 -7.6235 25 1 10.0236 7.4782 -8.8803 26 6 8.1230 2.7411 -6.9430 27 6 4.1865 1.4434 -3.6032 28 6 3.5018 1.4429 -2.4096 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6768 1.9562 0.8900 35 1 1.6768 1.9563 -0.8899 36 1 4.4199 2.4697 1.5826 37 1 3.6493 0.9282 2.0277 38 1 5.1904 0.9283 1.1371 39 1 6.1307 1.4418 -0.2678 40 1 7.3624 1.4519 -2.3927 41 1 8.1546 1.4438 -4.0440 42 1 6.9658 0.2144 -7.1853 43 1 8.5824 0.2405 -7.9297 44 1 8.3050 -0.6882 -6.4368 45 1 10.2044 0.9479 -5.0087 46 1 10.4834 1.1450 -6.7716 47 1 11.1775 3.3030 -5.9351 48 1 9.9020 3.3174 -4.6789 49 1 12.1047 5.8009 -5.7232 50 1 8.0946 2.5253 -8.0111 51 1 7.1743 3.1730 -6.6245 52 1 3.6445 1.4437 -4.5373 53 1 2.4218 1.4426 -2.4072 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046877123.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:28 Heat of formation + Delta-G solvation = 5.568469 kcal Electronic energy + Delta-G solvation = -30548.266235 eV Core-core repulsion = 26612.805495 eV Total energy + Delta-G solvation = -3935.460740 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.48928 -40.43856 -38.86152 -37.40681 -35.72453 -34.37821 -33.72105 -32.22517 -31.63057 -30.68209 -30.19720 -28.39341 -27.54148 -26.33596 -25.36784 -23.66410 -23.29025 -22.34281 -22.09541 -21.22735 -20.31505 -19.31513 -18.75729 -17.81384 -17.25624 -16.82889 -16.55055 -16.16327 -15.97361 -15.69737 -15.63828 -15.50578 -15.19313 -14.80254 -14.68617 -14.39161 -14.28292 -14.03524 -13.92312 -13.67362 -13.36552 -13.31691 -13.28345 -13.07501 -13.05253 -12.83496 -12.79341 -12.76191 -12.63858 -12.21740 -12.09247 -12.02417 -11.95033 -11.76978 -11.68081 -11.54576 -11.50866 -10.79218 -10.75026 -10.61933 -9.98649 -9.96571 -8.88283 -8.26964 -7.78440 -5.21912 0.10912 0.49510 1.44500 1.46405 1.55510 2.00485 2.13052 2.28887 2.48547 3.01693 3.30422 3.61145 3.72116 3.78838 3.90402 3.98194 4.03594 4.04138 4.08994 4.19336 4.28116 4.37720 4.45502 4.46485 4.59717 4.64102 4.66173 4.68104 4.70460 4.74186 4.83072 4.87496 4.91799 4.92992 4.95130 5.02393 5.06106 5.11061 5.19761 5.20277 5.25063 5.34595 5.35325 5.42636 5.43369 5.54509 5.62051 5.71862 5.78121 5.81508 6.29170 6.31241 6.45723 6.70074 7.11512 7.37592 7.77123 8.41335 9.22949 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.014660 B = 0.002327 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.481819 B =12031.708065 C =12710.304014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C 0.114 3.886 4 N -0.624 5.624 5 C 0.082 3.918 6 C 0.241 3.759 7 C -0.210 4.210 8 C -0.033 4.033 9 C -0.219 4.219 10 C 0.559 3.441 11 O -0.582 6.582 12 N -0.702 5.702 13 C 0.170 3.830 14 C -0.141 4.141 15 C -0.128 4.128 16 C 0.156 3.844 17 N -0.623 5.623 18 C -0.242 4.242 19 H 0.068 0.932 20 C -0.062 4.062 21 N -0.943 5.943 22 Si 0.979 3.021 23 H -0.288 1.288 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.136 3.864 27 C -0.022 4.022 28 C -0.211 4.211 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.151 0.849 40 H 0.137 0.863 41 H 0.406 0.594 42 H 0.057 0.943 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.101 0.899 46 H 0.085 0.915 47 H 0.078 0.922 48 H -0.008 1.008 49 H 0.249 0.751 50 H 0.022 0.978 51 H 0.005 0.995 52 H 0.121 0.879 53 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.550 -14.283 18.593 28.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.177 4.177 3 C -0.008 4.008 4 N -0.331 5.331 5 C -0.060 4.060 6 C 0.135 3.865 7 C -0.232 4.232 8 C -0.053 4.053 9 C -0.225 4.225 10 C 0.350 3.650 11 O -0.464 6.464 12 N -0.354 5.354 13 C 0.083 3.917 14 C -0.199 4.199 15 C -0.166 4.166 16 C 0.031 3.969 17 N -0.349 5.349 18 C -0.371 4.371 19 H 0.086 0.914 20 C -0.255 4.255 21 N -0.593 5.593 22 Si 0.807 3.193 23 H -0.215 1.215 24 H -0.212 1.212 25 H -0.199 1.199 26 C 0.010 3.990 27 C -0.042 4.042 28 C -0.234 4.234 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.168 0.832 40 H 0.155 0.845 41 H 0.243 0.757 42 H 0.076 0.924 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.120 0.880 46 H 0.103 0.897 47 H 0.096 0.904 48 H 0.010 0.990 49 H 0.059 0.941 50 H 0.040 0.960 51 H 0.023 0.977 52 H 0.139 0.861 53 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -16.926 -14.105 18.061 28.489 hybrid contribution 0.355 1.284 -0.299 1.365 sum -16.570 -12.821 17.762 27.467 Atomic orbital electron populations 1.21698 0.94265 1.02288 1.02436 1.21904 0.96751 0.96904 1.02116 1.21723 0.78161 0.97161 1.03768 1.46676 1.05741 1.77544 1.03168 1.21888 0.97767 1.02120 0.84202 1.18137 0.91516 0.90296 0.86519 1.20822 0.92184 1.11275 0.98917 1.21206 1.00136 0.92995 0.90937 1.19641 0.94597 1.15912 0.92312 1.18583 0.82090 0.74944 0.89402 1.90678 1.69008 1.52402 1.34305 1.45809 1.05808 1.74645 1.09113 1.21156 0.92319 0.94115 0.84068 1.21965 1.02463 0.95887 0.99618 1.23297 0.92363 0.97633 1.03340 1.21845 0.96449 0.88442 0.90150 1.44781 1.24736 1.13405 1.51947 1.19370 1.06260 0.90600 1.20878 0.91365 1.25566 0.97194 1.02398 1.00338 1.70010 1.14000 1.37004 1.38280 0.85068 0.76774 0.79408 0.78002 1.21505 1.21217 1.19924 1.21680 0.90357 0.90437 0.96513 1.20991 0.92553 0.92240 0.98394 1.20723 1.00488 1.11879 0.90261 0.92527 0.92355 0.91634 0.93042 0.91572 0.88860 0.90661 0.92608 0.89566 0.90584 0.83160 0.84488 0.75675 0.92390 0.91223 0.90430 0.88027 0.89684 0.90419 0.98984 0.94134 0.96048 0.97712 0.86090 0.83999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 71.98 0.71 -0.44 16 2 C -0.14 -1.37 6.26 30.59 0.19 -1.18 16 3 C 0.11 1.20 5.15 86.38 0.44 1.65 16 4 N -0.62 -8.68 2.99 -722.22 -2.16 -10.84 16 5 C 0.08 0.74 10.18 127.77 1.30 2.04 16 6 C 0.24 4.75 6.55 38.47 0.25 5.00 16 7 C -0.21 -4.19 9.18 22.36 0.21 -3.98 16 8 C -0.03 -0.80 9.53 22.50 0.21 -0.59 16 9 C -0.22 -6.62 5.88 -20.08 -0.12 -6.74 16 10 C 0.56 20.44 6.97 86.69 0.60 21.04 16 11 O -0.58 -25.11 13.28 -4.03 -0.05 -25.16 16 12 N -0.70 -23.95 5.09 -420.67 -2.14 -26.09 16 13 C 0.17 6.37 0.80 4.79 0.00 6.37 16 14 C -0.14 -4.57 8.41 71.98 0.61 -3.97 16 15 C -0.13 -4.62 6.11 32.16 0.20 -4.42 16 16 C 0.16 7.68 5.88 87.03 0.51 8.19 16 17 N -0.62 -34.28 3.40 -691.01 -2.35 -36.63 16 18 C -0.24 -14.50 10.27 84.03 0.86 -13.64 16 19 H 0.07 4.06 7.83 -2.91 -0.02 4.03 16 20 C -0.06 -3.65 5.49 84.86 0.47 -3.18 16 21 N -0.94 -56.52 10.09 21.65 0.22 -56.30 16 22 Si 0.98 47.32 29.55 68.60 2.03 49.35 16 23 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 24 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 25 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 26 C 0.14 6.61 6.16 86.73 0.53 7.14 16 27 C -0.02 -0.61 9.58 22.50 0.22 -0.40 16 28 C -0.21 -4.64 9.18 22.36 0.21 -4.44 16 29 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.38 8.14 -2.38 -0.02 0.36 16 32 H 0.05 0.69 8.14 -2.38 -0.02 0.68 16 33 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.09 0.67 8.07 -2.39 -0.02 0.65 16 35 H 0.08 0.87 6.17 -2.39 -0.01 0.85 16 36 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.09 0.46 8.07 -2.39 -0.02 0.44 16 38 H 0.08 0.64 6.17 -2.39 -0.01 0.62 16 39 H 0.15 2.20 6.11 -2.91 -0.02 2.18 16 40 H 0.14 2.83 6.39 -2.91 -0.02 2.81 16 41 H 0.41 11.70 6.49 -92.71 -0.60 11.10 16 42 H 0.06 2.10 6.20 -2.39 -0.01 2.09 16 43 H 0.07 2.14 8.12 -2.39 -0.02 2.12 16 44 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.10 2.90 8.05 -2.39 -0.02 2.88 16 46 H 0.08 2.97 8.05 -2.39 -0.02 2.95 16 47 H 0.08 4.32 5.87 -2.39 -0.01 4.31 16 48 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 49 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 50 H 0.02 1.06 7.80 -2.38 -0.02 1.04 16 51 H 0.00 0.26 6.68 -2.39 -0.02 0.25 16 52 H 0.12 3.56 7.64 -2.91 -0.02 3.54 16 53 H 0.14 2.52 6.11 -2.91 -0.02 2.50 16 Total: -1.00 -75.85 410.50 3.26 -72.59 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 0.30 Total: 24.62 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 7.41 Total: 8.46 kcal Atomic # 7 Polarization: -123.42 SS G_CDS: -6.43 Total: -129.86 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.05 Total: -25.16 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -75.85 3.26 -72.59 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046877123.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.159 kcal (2) G-P(sol) polarization free energy of solvation -75.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds