Wall clock time and date at job start Wed Apr 1 2020 03:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47046 * 2 1 4 4 C 1.53003 * 109.46652 * 119.99797 * 2 1 3 5 5 C 1.50706 * 109.46619 * 174.99766 * 4 2 1 6 6 C 1.35442 * 126.07056 * 269.68998 * 5 4 2 7 7 N 1.35535 * 108.87505 * 179.83355 * 6 5 4 8 8 H 0.96996 * 125.68478 * 180.16687 * 7 6 5 9 9 C 1.37655 * 108.64235 * 0.43657 * 7 6 5 10 10 C 1.46680 * 126.23488 * 179.77043 * 9 7 6 11 11 O 1.21696 * 119.99541 * 185.92687 * 10 9 7 12 12 N 1.34768 * 119.99965 * 5.92762 * 10 9 7 13 13 C 1.46495 * 120.00062 * 183.13714 * 12 10 9 14 14 H 1.09003 * 109.32419 * 52.49364 * 13 12 10 15 15 C 1.53031 * 109.32745 * 292.85190 * 13 12 10 16 16 C 1.53972 * 108.82528 * 295.14284 * 15 13 12 17 17 H 1.08997 * 112.99476 * 168.99900 * 16 15 13 18 18 C 1.55423 * 106.41495 * 293.81532 * 16 15 13 19 19 C 1.55173 * 100.35202 * 73.37894 * 18 16 15 20 20 H 1.09003 * 112.48556 * 162.67347 * 19 18 16 21 21 C 1.52991 * 109.32865 * 171.96299 * 13 12 10 22 22 N 1.47784 * 104.25696 * 40.55316 * 19 18 16 23 23 C 1.36941 * 125.86154 * 153.50980 * 22 19 18 24 24 H 1.07997 * 119.99527 * 6.79537 * 23 22 19 25 25 C 1.38813 * 120.00249 * 186.79847 * 23 22 19 26 26 N 1.31623 * 119.99625 * 3.57524 * 25 23 22 27 27 Si 1.86798 * 119.99873 * 183.57396 * 25 23 22 28 28 H 1.48495 * 109.47239 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.47197 * 120.00137 * 27 25 23 30 30 H 1.48500 * 109.47005 * 239.99735 * 27 25 23 31 31 C 1.47084 * 108.28567 * 333.53049 * 22 19 18 32 32 C 1.37881 * 107.52979 * 359.73399 * 9 7 6 33 33 H 1.09000 * 109.47129 * 300.00097 * 1 2 3 34 34 H 1.09005 * 109.46963 * 60.00045 * 1 2 3 35 35 H 1.08997 * 109.47388 * 180.02562 * 1 2 3 36 36 H 1.09000 * 109.47129 * 239.99903 * 2 1 3 37 37 H 1.09002 * 109.46877 * 180.02562 * 3 2 1 38 38 H 1.09003 * 109.47093 * 299.99275 * 3 2 1 39 39 H 1.09000 * 109.47236 * 59.99968 * 3 2 1 40 40 H 1.09003 * 109.47348 * 294.99644 * 4 2 1 41 41 H 1.09000 * 109.47263 * 55.00420 * 4 2 1 42 42 H 1.08004 * 125.56558 * 359.97438 * 6 5 4 43 43 H 0.96998 * 120.00081 * 3.14180 * 12 10 9 44 44 H 1.09003 * 109.57413 * 54.94540 * 15 13 12 45 45 H 1.08996 * 109.57928 * 175.20521 * 15 13 12 46 46 H 1.09001 * 111.23761 * 191.15038 * 18 16 15 47 47 H 1.09001 * 111.23912 * 315.56081 * 18 16 15 48 48 H 1.09000 * 109.53435 * 185.06518 * 21 13 12 49 49 H 1.09002 * 109.52967 * 305.28906 * 21 13 12 50 50 H 0.97001 * 119.99603 * 180.02562 * 26 25 23 51 51 H 1.08995 * 109.97586 * 241.75152 * 31 22 19 52 52 H 1.09001 * 109.97565 * 120.46428 * 31 22 19 53 53 H 1.08000 * 126.45183 * 179.97438 * 32 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5418 -0.8294 1.1889 6 6 4.2466 -1.8499 0.6445 7 7 5.5699 -1.5886 0.7769 8 1 6.2926 -2.1577 0.4691 9 6 5.7177 -0.3839 1.4263 10 6 6.9871 0.2641 1.7732 11 8 6.9885 1.2793 2.4443 12 7 8.1517 -0.2648 1.3486 13 6 9.4222 0.3427 1.7520 14 1 9.4450 0.4444 2.8371 15 6 9.5480 1.7266 1.1110 16 6 9.6286 1.5606 -0.4176 17 1 9.5281 2.5040 -0.9542 18 6 10.9689 0.8300 -0.7100 19 6 10.6157 -0.6029 -0.2306 20 1 11.3063 -1.3534 -0.6153 21 6 10.5773 -0.5564 1.3071 22 7 9.2316 -0.8142 -0.7036 23 6 8.6569 -2.0242 -0.9881 24 1 9.1873 -2.9389 -0.7680 25 6 7.3928 -2.0751 -1.5593 26 7 6.7759 -0.9611 -1.8923 27 14 6.5674 -3.7245 -1.8553 28 1 7.4640 -4.8160 -1.3972 29 1 5.2906 -3.7818 -1.0993 30 1 6.2917 -3.8868 -3.3054 31 6 8.5773 0.4982 -0.8171 32 6 4.4551 0.1031 1.6906 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 -0.3634 -1.0276 0.0005 36 1 1.8933 -0.5138 -0.8900 37 1 3.1300 1.4425 -0.0005 38 1 1.6767 1.9563 -0.8901 39 1 1.6766 1.9563 0.8900 40 1 1.7515 -0.1582 2.1371 41 1 1.6053 -1.7198 1.2952 42 1 3.8232 -2.7275 0.1786 43 1 8.1487 -1.0476 0.7759 44 1 8.6763 2.3286 1.3677 45 1 10.4507 2.2172 1.4752 46 1 11.2020 0.8437 -1.7747 47 1 11.7851 1.2530 -0.1244 48 1 11.5180 -0.1542 1.6831 49 1 10.4275 -1.5626 1.6985 50 1 5.8923 -0.9967 -2.2911 51 1 7.7228 0.5478 -0.1423 52 1 8.2516 0.6644 -1.8439 53 1 4.2166 1.0299 2.1911 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047184151.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:27 Heat of formation + Delta-G solvation = 53.438946 kcal Electronic energy + Delta-G solvation = -33675.387988 eV Core-core repulsion = 29742.003068 eV Total energy + Delta-G solvation = -3933.384920 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.59519 -41.65221 -39.19565 -37.18248 -35.53011 -34.84137 -32.49738 -32.24187 -31.95680 -30.45661 -29.35105 -27.89295 -27.20753 -26.80933 -24.89886 -24.15767 -22.57654 -21.46903 -21.29098 -20.78254 -20.31140 -20.03932 -19.34675 -18.57840 -17.33855 -16.80395 -16.45406 -16.28204 -15.97141 -15.69358 -15.32841 -15.15194 -14.90960 -14.51270 -14.43467 -14.07304 -14.00922 -13.89777 -13.87653 -13.59231 -13.41376 -13.33447 -13.16940 -13.05579 -12.99732 -12.78625 -12.73214 -12.60380 -12.29368 -12.26323 -11.90081 -11.75178 -11.67406 -11.60109 -11.40882 -11.37396 -11.11896 -11.01353 -10.80179 -10.63859 -9.55820 -9.26594 -8.84651 -8.79256 -7.83363 -5.25564 0.71753 1.30763 1.44526 1.48145 1.88714 2.34616 2.42859 2.55296 2.71122 3.23257 3.60938 3.79518 3.96809 4.05683 4.07731 4.11665 4.22548 4.24119 4.30456 4.33964 4.44047 4.45195 4.50900 4.60623 4.63685 4.77419 4.84116 4.84997 4.88948 4.89967 4.91715 5.05173 5.07872 5.12358 5.13565 5.17848 5.22337 5.25888 5.34271 5.38236 5.38638 5.41268 5.48621 5.54574 5.58998 5.61580 5.79398 5.86103 5.90001 6.00958 6.17211 6.19861 6.64473 6.96153 7.08423 7.51633 7.70670 8.41300 9.16645 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.012407 B = 0.004772 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.179419 B = 5866.704643 C = 7073.202819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 C -0.143 4.143 4 C -0.032 4.032 5 C -0.172 4.172 6 C 0.007 3.993 7 N -0.512 5.512 8 H 0.416 0.584 9 C -0.057 4.057 10 C 0.569 3.431 11 O -0.591 6.591 12 N -0.695 5.695 13 C 0.152 3.848 14 H 0.064 0.936 15 C -0.116 4.116 16 C -0.119 4.119 17 H 0.078 0.922 18 C -0.114 4.114 19 C 0.139 3.861 20 H 0.075 0.925 21 C -0.129 4.129 22 N -0.606 5.606 23 C -0.263 4.263 24 H 0.087 0.913 25 C -0.040 4.040 26 N -0.904 5.904 27 Si 0.920 3.080 28 H -0.267 1.267 29 H -0.263 1.263 30 H -0.302 1.302 31 C 0.154 3.846 32 C -0.126 4.126 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.033 0.967 38 H 0.050 0.950 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.174 0.826 43 H 0.428 0.572 44 H 0.046 0.954 45 H 0.092 0.908 46 H 0.053 0.947 47 H 0.099 0.901 48 H 0.105 0.895 49 H 0.059 0.941 50 H 0.247 0.753 51 H 0.054 0.946 52 H 0.001 0.999 53 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.169 -0.409 5.379 5.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 C -0.201 4.201 4 C -0.070 4.070 5 C -0.178 4.178 6 C -0.131 4.131 7 N -0.106 5.106 8 H 0.257 0.743 9 C -0.172 4.172 10 C 0.357 3.643 11 O -0.475 6.475 12 N -0.358 5.358 13 C 0.047 3.953 14 H 0.082 0.918 15 C -0.154 4.154 16 C -0.138 4.138 17 H 0.096 0.904 18 C -0.152 4.152 19 C 0.033 3.967 20 H 0.093 0.907 21 C -0.169 4.169 22 N -0.332 5.332 23 C -0.392 4.392 24 H 0.104 0.896 25 C -0.238 4.238 26 N -0.549 5.549 27 Si 0.748 3.252 28 H -0.192 1.192 29 H -0.189 1.189 30 H -0.229 1.229 31 C 0.029 3.971 32 C -0.154 4.154 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.191 0.809 43 H 0.280 0.720 44 H 0.065 0.935 45 H 0.110 0.890 46 H 0.072 0.928 47 H 0.117 0.883 48 H 0.124 0.876 49 H 0.078 0.922 50 H 0.058 0.942 51 H 0.072 0.928 52 H 0.020 0.980 53 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.141 0.047 5.678 6.069 hybrid contribution -0.126 -1.265 -1.377 1.874 sum -2.267 -1.218 4.302 5.012 Atomic orbital electron populations 1.21793 0.93590 1.02206 1.02087 1.21055 0.96282 0.95813 0.97640 1.21811 1.00341 0.96528 1.01390 1.20023 0.87825 1.01149 0.97997 1.19482 0.96407 0.95282 1.06635 1.22097 0.82529 1.02402 1.06051 1.42272 1.08362 1.17302 1.42713 0.74307 1.20479 0.95304 0.91536 1.09874 1.17402 0.83792 0.83913 0.79184 1.90658 1.88007 1.25998 1.42792 1.47479 1.04435 1.34045 1.49809 1.20880 0.83547 0.93351 0.97489 0.91836 1.22010 1.02112 0.96534 0.94786 1.22765 0.97095 0.98074 0.95895 0.90373 1.22941 0.96363 0.95363 1.00531 1.21904 0.86401 0.95914 0.92448 0.90662 1.22444 0.97614 0.98925 0.97895 1.45093 1.09132 1.02272 1.76711 1.19475 0.99177 0.84928 1.35594 0.89554 1.25413 0.98922 0.98579 1.00876 1.70200 1.14211 1.25176 1.45271 0.85991 0.79923 0.81386 0.77946 1.19166 1.18875 1.22933 1.21835 0.94542 0.82971 0.97725 1.21074 0.89920 1.00128 1.04230 0.91897 0.92659 0.91929 0.93008 0.94734 0.93080 0.92103 0.90711 0.90213 0.80927 0.71968 0.93520 0.88964 0.92795 0.88310 0.87647 0.92237 0.94236 0.92796 0.98039 0.84765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.19 71.98 0.66 -2.01 16 2 C -0.09 -2.26 2.91 -10.79 -0.03 -2.29 16 3 C -0.14 -3.99 8.92 71.98 0.64 -3.35 16 4 C -0.03 -0.83 5.18 29.85 0.15 -0.68 16 5 C -0.17 -5.84 4.78 -20.12 -0.10 -5.94 16 6 C 0.01 0.24 11.53 83.47 0.96 1.20 16 7 N -0.51 -20.90 5.40 -183.61 -0.99 -21.89 16 8 H 0.42 17.58 4.39 -92.71 -0.41 17.17 16 9 C -0.06 -2.48 7.03 40.35 0.28 -2.20 16 10 C 0.57 25.99 5.90 86.45 0.51 26.50 16 11 O -0.59 -28.83 15.36 -4.34 -0.07 -28.89 16 12 N -0.69 -29.19 2.79 -446.48 -1.24 -30.44 16 13 C 0.15 5.42 2.75 45.00 0.12 5.54 16 14 H 0.06 2.23 8.12 -2.39 -0.02 2.21 16 15 C -0.12 -4.05 5.13 30.93 0.16 -3.89 16 16 C -0.12 -4.42 4.33 -9.05 -0.04 -4.46 16 17 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 18 C -0.11 -3.55 6.18 32.17 0.20 -3.35 16 19 C 0.14 4.81 4.30 45.79 0.20 5.01 16 20 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 21 C -0.13 -3.88 5.41 30.89 0.17 -3.71 16 22 N -0.61 -26.39 1.76 -664.45 -1.17 -27.56 16 23 C -0.26 -12.25 8.43 84.03 0.71 -11.54 16 24 H 0.09 3.89 7.83 -2.91 -0.02 3.87 16 25 C -0.04 -1.93 3.47 84.86 0.29 -1.63 16 26 N -0.90 -46.74 10.06 21.65 0.22 -46.53 16 27 Si 0.92 37.88 28.12 68.60 1.93 39.81 16 28 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 29 H -0.26 -9.99 6.18 99.48 0.61 -9.37 16 30 H -0.30 -13.38 7.11 99.48 0.71 -12.68 16 31 C 0.15 7.14 3.95 86.85 0.34 7.48 16 32 C -0.13 -4.99 9.26 22.57 0.21 -4.78 16 33 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 36 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.03 1.18 6.42 -2.39 -0.02 1.17 16 38 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.17 5.42 7.42 -2.91 -0.02 5.40 16 43 H 0.43 18.65 3.22 -92.71 -0.30 18.35 16 44 H 0.05 1.90 6.49 -2.39 -0.02 1.89 16 45 H 0.09 2.55 7.98 -2.39 -0.02 2.53 16 46 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.10 2.37 7.75 -2.39 -0.02 2.35 16 48 H 0.11 2.38 8.00 -2.39 -0.02 2.37 16 49 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 50 H 0.25 13.03 8.31 -92.71 -0.77 12.26 16 51 H 0.05 2.73 3.64 -15.32 -0.06 2.67 16 52 H 0.00 0.08 6.93 -2.39 -0.02 0.06 16 53 H 0.13 5.19 8.06 -2.91 -0.02 5.17 16 Total: -1.00 -58.57 384.82 4.19 -54.38 By element: Atomic # 1 Polarization: 65.15 SS G_CDS: 0.07 Total: 65.22 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: 5.45 Total: -4.10 kcal Atomic # 7 Polarization: -123.22 SS G_CDS: -3.19 Total: -126.41 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -0.07 Total: -28.89 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 1.93 Total: 39.81 kcal Total: -58.57 4.19 -54.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047184151.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.817 kcal (2) G-P(sol) polarization free energy of solvation -58.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds