Wall clock time and date at job start Wed Apr 1 2020 04:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46901 * 109.46982 * 14.23361 * 3 2 1 5 5 C 1.46856 * 110.99609 * 170.00130 * 4 3 2 6 6 C 1.53034 * 109.51979 * 174.16169 * 5 4 3 7 7 C 1.53116 * 109.27999 * 59.18234 * 6 5 4 8 8 C 1.50703 * 109.52633 * 182.44145 * 7 6 5 9 9 O 1.21282 * 119.99605 * 21.72754 * 8 7 6 10 10 N 1.34773 * 120.00299 * 201.73653 * 8 7 6 11 11 C 1.46800 * 119.57418 * 184.57437 * 10 8 7 12 12 C 1.53043 * 107.81555 * 232.00731 * 11 10 8 13 13 C 1.52738 * 108.52728 * 302.14355 * 12 11 10 14 14 C 1.53008 * 110.79818 * 63.65305 * 13 12 11 15 15 H 1.08998 * 111.38864 * 68.76077 * 14 13 12 16 16 C 1.45121 * 119.57550 * 4.83978 * 10 8 7 17 17 H 1.08998 * 109.97096 * 11.92524 * 16 10 8 18 18 C 1.54422 * 111.60821 * 248.63610 * 16 10 8 19 19 C 1.54559 * 102.44671 * 203.42401 * 18 16 10 20 20 N 1.47124 * 107.25952 * 21.66908 * 19 18 16 21 21 C 1.36931 * 125.77272 * 182.57491 * 20 19 18 22 22 H 1.08000 * 120.00433 * 180.02562 * 21 20 19 23 23 C 1.38814 * 119.99726 * 0.02830 * 21 20 19 24 24 N 1.31615 * 120.00284 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99732 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47302 * 59.99763 * 25 23 21 27 27 H 1.48506 * 109.46826 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47229 * 299.99360 * 25 23 21 29 29 C 1.53121 * 109.15895 * 302.34187 * 7 6 5 30 30 C 1.46842 * 111.00020 * 45.79275 * 4 3 2 31 31 H 4.40885 * 5.52118 * 180.02562 * 4 1 2 32 32 H 1.08998 * 109.46862 * 254.23570 * 3 2 1 33 33 H 1.09000 * 109.46827 * 134.23402 * 3 2 1 34 34 H 1.08998 * 109.45871 * 54.14707 * 5 4 3 35 35 H 1.09000 * 109.45704 * 294.17523 * 5 4 3 36 36 H 1.09003 * 109.50098 * 179.11778 * 6 5 4 37 37 H 1.08999 * 109.50291 * 299.19557 * 6 5 4 38 38 H 1.08997 * 109.52801 * 62.31056 * 7 6 5 39 39 H 1.08994 * 109.83566 * 351.58806 * 11 10 8 40 40 H 1.09000 * 109.83234 * 112.54469 * 11 10 8 41 41 H 1.09002 * 109.69556 * 182.37023 * 12 11 10 42 42 H 1.09006 * 109.67678 * 61.90540 * 12 11 10 43 43 H 1.09000 * 109.20909 * 303.31877 * 13 12 11 44 44 H 1.09000 * 109.17435 * 183.97349 * 13 12 11 45 45 H 1.08998 * 110.81023 * 321.66912 * 18 16 10 46 46 H 1.09000 * 110.80909 * 85.18806 * 18 16 10 47 47 H 1.09004 * 109.88855 * 262.25263 * 19 18 16 48 48 H 1.09009 * 109.88227 * 141.08223 * 19 18 16 49 49 H 0.97002 * 120.00277 * 180.02562 * 24 23 21 50 50 H 1.08996 * 109.50601 * 177.60007 * 29 7 6 51 51 H 1.09001 * 109.50354 * 297.71462 * 29 7 6 52 52 H 1.09003 * 109.46476 * 65.81945 * 30 4 3 53 53 H 1.09000 * 109.45253 * 305.84563 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1363 -1.3416 -0.3405 5 6 4.5847 -1.3271 -0.5826 6 6 5.0828 -2.7591 -0.7903 7 6 4.3531 -3.3800 -1.9846 8 6 4.7957 -4.8102 -2.1573 9 8 5.2825 -5.4112 -1.2231 10 7 4.6507 -5.4212 -3.3497 11 6 4.9908 -6.8432 -3.4813 12 6 5.9483 -6.9880 -4.6664 13 6 5.2642 -6.4322 -5.9138 14 6 4.9921 -4.9341 -5.7623 15 1 5.9182 -4.3594 -5.7661 16 6 4.1659 -4.6636 -4.4886 17 1 4.1745 -3.5983 -4.2579 18 6 2.7532 -5.1189 -4.9148 19 6 2.6949 -4.6815 -6.3960 20 7 4.0825 -4.5424 -6.8650 21 6 4.4684 -4.1225 -8.1099 22 1 5.5178 -4.0549 -8.3558 23 6 3.5106 -3.7836 -9.0558 24 7 2.2317 -3.8664 -8.7564 25 14 4.0371 -3.2102 -10.7539 26 1 4.8305 -4.2783 -11.4133 27 1 2.8333 -2.9123 -11.5710 28 1 4.8658 -1.9844 -10.6276 29 6 2.8440 -3.3389 -1.7283 30 6 2.4107 -1.8901 -1.4934 31 1 -1.0498 -0.0003 -0.0003 32 1 3.0092 0.2800 0.9890 33 1 3.0090 0.7177 -0.7363 34 1 5.0919 -0.8870 0.2759 35 1 4.7981 -0.7356 -1.4729 36 1 6.1551 -2.7467 -0.9854 37 1 4.8827 -3.3474 0.1052 38 1 4.5857 -2.8152 -2.8874 39 1 5.4761 -7.1933 -2.5703 40 1 4.0872 -7.4240 -3.6666 41 1 6.1885 -8.0403 -4.8182 42 1 6.8628 -6.4283 -4.4698 43 1 4.3200 -6.9544 -6.0678 44 1 5.9088 -6.5941 -6.7778 45 1 2.6518 -6.2006 -4.8260 46 1 1.9886 -4.6078 -4.3297 47 1 2.1775 -3.7259 -6.4804 48 1 2.1783 -5.4386 -6.9861 49 1 1.5624 -3.6300 -9.4175 50 1 2.3168 -3.7407 -2.5935 51 1 2.6080 -3.9366 -0.8478 52 1 2.6344 -1.2959 -2.3795 53 1 1.3391 -1.8589 -1.2962 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049917968.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:33 Heat of formation + Delta-G solvation = 39.229282 kcal Electronic energy + Delta-G solvation = -32207.128023 eV Core-core repulsion = 28273.126925 eV Total energy + Delta-G solvation = -3934.001098 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.98032 -40.20360 -39.20425 -36.56841 -35.66718 -34.16972 -33.93998 -32.92798 -31.76646 -30.79261 -29.90785 -28.38866 -26.43054 -26.01200 -24.51754 -24.19788 -23.22254 -22.01072 -21.68321 -20.71716 -19.37561 -18.98857 -18.71206 -18.37147 -17.29391 -16.80431 -16.65748 -16.29168 -16.14599 -15.88232 -15.72202 -15.40077 -15.14863 -14.93675 -14.74095 -14.51493 -14.25184 -14.11258 -13.92245 -13.77215 -13.61387 -13.38193 -13.12331 -12.96794 -12.79420 -12.64429 -12.48160 -12.34418 -12.23718 -12.13669 -12.10800 -11.97842 -11.73569 -11.59520 -11.54703 -11.48362 -11.33699 -11.14219 -11.05458 -10.67867 -10.58837 -9.60843 -9.31425 -8.86630 -7.81829 -5.16825 1.47987 1.49505 1.55591 1.56121 1.75959 1.93197 1.96247 2.51300 3.06211 3.32352 3.35896 3.46920 3.63960 3.74210 3.76128 3.79920 3.90356 4.03043 4.08085 4.12825 4.19371 4.22048 4.36442 4.38298 4.43595 4.53089 4.57648 4.58439 4.62548 4.67405 4.69080 4.70610 4.78772 4.86302 4.90527 4.92774 5.01783 5.04167 5.06783 5.11301 5.12821 5.18004 5.32542 5.36012 5.44911 5.56688 5.59846 5.67138 5.79278 5.99570 6.07683 6.20130 6.40877 6.70579 7.12151 7.14379 7.78309 8.42846 9.27531 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.009912 B = 0.003537 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2824.306764 B = 7913.865842 C = 9809.019592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.216 4.216 3 C 0.160 3.840 4 N -0.544 5.544 5 C 0.060 3.940 6 C -0.091 4.091 7 C -0.108 4.108 8 C 0.522 3.478 9 O -0.573 6.573 10 N -0.590 5.590 11 C 0.110 3.890 12 C -0.119 4.119 13 C -0.120 4.120 14 C 0.149 3.851 15 H 0.058 0.942 16 C 0.142 3.858 17 H 0.101 0.899 18 C -0.137 4.137 19 C 0.192 3.808 20 N -0.615 5.615 21 C -0.235 4.235 22 H 0.080 0.920 23 C -0.060 4.060 24 N -0.949 5.949 25 Si 0.971 3.029 26 H -0.281 1.281 27 H -0.297 1.297 28 H -0.278 1.278 29 C -0.097 4.097 30 C 0.061 3.939 31 H 0.242 0.758 32 H 0.114 0.886 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.043 0.957 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.064 0.936 43 H 0.048 0.952 44 H 0.047 0.953 45 H 0.070 0.930 46 H 0.083 0.917 47 H 0.020 0.980 48 H 0.004 0.996 49 H 0.246 0.754 50 H 0.074 0.926 51 H 0.067 0.933 52 H 0.035 0.965 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.051 3.681 17.380 17.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.217 4.217 3 C 0.035 3.965 4 N -0.269 5.269 5 C -0.068 4.068 6 C -0.129 4.129 7 C -0.129 4.129 8 C 0.311 3.689 9 O -0.453 6.453 10 N -0.320 5.320 11 C -0.012 4.012 12 C -0.158 4.158 13 C -0.160 4.160 14 C 0.042 3.958 15 H 0.076 0.924 16 C 0.036 3.964 17 H 0.118 0.882 18 C -0.176 4.176 19 C 0.067 3.933 20 N -0.340 5.340 21 C -0.364 4.364 22 H 0.098 0.902 23 C -0.253 4.253 24 N -0.597 5.597 25 Si 0.800 3.200 26 H -0.207 1.207 27 H -0.223 1.223 28 H -0.204 1.204 29 C -0.135 4.135 30 C -0.067 4.067 31 H 0.258 0.742 32 H 0.132 0.868 33 H 0.084 0.916 34 H 0.119 0.881 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.090 0.910 41 H 0.110 0.890 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.088 0.912 46 H 0.101 0.899 47 H 0.038 0.962 48 H 0.023 0.977 49 H 0.055 0.945 50 H 0.093 0.907 51 H 0.086 0.914 52 H 0.054 0.946 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.149 3.123 18.045 18.439 hybrid contribution -0.190 0.641 -2.283 2.379 sum 1.958 3.764 15.761 16.323 Atomic orbital electron populations 1.25679 0.96870 0.98547 1.00117 1.23286 0.95139 1.01853 1.01372 1.19183 0.84447 0.89808 1.03098 1.62087 1.04677 1.21867 1.38285 1.22148 0.86737 0.96204 1.01671 1.21372 0.99179 0.95502 0.96875 1.21473 0.97961 0.92108 1.01375 1.20935 0.76951 0.89409 0.81559 1.90630 1.46091 1.67874 1.40715 1.47641 1.64318 1.11081 1.08993 1.21660 0.99125 0.80750 0.99638 1.21750 0.98057 1.02260 0.93720 1.21929 0.99909 0.96788 0.97402 1.21548 0.92969 0.94320 0.86986 0.92393 1.21656 0.93749 0.95920 0.85043 0.88151 1.23016 0.96585 1.01321 0.96690 1.20870 0.85657 0.97397 0.89417 1.44899 1.01674 1.77759 1.09636 1.19321 0.92482 1.36293 0.88303 0.90206 1.25506 0.95454 1.02658 1.01679 1.70139 0.99652 1.55430 1.34519 0.85269 0.76435 0.78320 0.80001 1.20692 1.22298 1.20376 1.21485 0.92507 0.97264 1.02272 1.22046 0.98922 0.94301 0.91436 0.74180 0.86827 0.91607 0.88085 0.93828 0.90656 0.91248 0.88658 0.88973 0.90963 0.89027 0.91763 0.93272 0.93450 0.91165 0.89890 0.96159 0.97729 0.94494 0.90738 0.91382 0.94648 0.90228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.34 19.02 74.32 1.41 -1.92 16 2 C -0.22 -4.19 11.51 31.13 0.36 -3.84 16 3 C 0.16 2.66 5.77 84.50 0.49 3.15 16 4 N -0.54 -10.60 4.79 -907.45 -4.35 -14.95 16 5 C 0.06 1.02 5.42 86.32 0.47 1.49 16 6 C -0.09 -1.94 4.91 30.64 0.15 -1.79 16 7 C -0.11 -2.59 1.79 -11.46 -0.02 -2.61 16 8 C 0.52 15.03 6.80 87.66 0.60 15.63 16 9 O -0.57 -19.40 15.33 -3.04 -0.05 -19.45 16 10 N -0.59 -16.77 2.74 -795.20 -2.18 -18.95 16 11 C 0.11 2.90 6.14 86.34 0.53 3.43 16 12 C -0.12 -3.09 6.09 30.52 0.19 -2.91 16 13 C -0.12 -4.05 5.10 30.51 0.16 -3.89 16 14 C 0.15 5.56 3.60 45.08 0.16 5.72 16 15 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 16 C 0.14 4.46 2.59 46.14 0.12 4.58 16 17 H 0.10 3.10 5.35 -2.39 -0.01 3.08 16 18 C -0.14 -4.64 5.95 31.61 0.19 -4.45 16 19 C 0.19 8.84 5.19 86.79 0.45 9.29 16 20 N -0.61 -29.21 2.91 -667.04 -1.94 -31.16 16 21 C -0.23 -12.49 10.29 84.03 0.86 -11.62 16 22 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 23 C -0.06 -3.27 5.49 84.86 0.47 -2.80 16 24 N -0.95 -54.92 10.33 21.65 0.22 -54.70 16 25 Si 0.97 44.47 29.55 68.60 2.03 46.49 16 26 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 27 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 28 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 29 C -0.10 -2.25 5.33 30.65 0.16 -2.08 16 30 C 0.06 1.31 5.08 86.33 0.44 1.75 16 31 H 0.24 2.46 7.80 -4.43 -0.03 2.43 16 32 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.07 0.98 8.08 -2.39 -0.02 0.97 16 34 H 0.10 1.34 8.12 -2.39 -0.02 1.32 16 35 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.07 1.70 7.81 -2.39 -0.02 1.69 16 38 H 0.10 2.27 6.08 -2.39 -0.01 2.26 16 39 H 0.09 2.45 6.93 -2.39 -0.02 2.43 16 40 H 0.07 1.82 7.54 -2.39 -0.02 1.80 16 41 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 43 H 0.05 1.79 7.12 -2.39 -0.02 1.77 16 44 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.07 2.29 6.82 -2.39 -0.02 2.28 16 46 H 0.08 2.49 6.60 -2.39 -0.02 2.48 16 47 H 0.02 1.05 7.30 -2.38 -0.02 1.03 16 48 H 0.00 0.24 7.60 -2.38 -0.02 0.22 16 49 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 50 H 0.07 1.77 6.07 -2.39 -0.01 1.75 16 51 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 52 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 53 H 0.08 1.77 6.36 -2.39 -0.02 1.76 16 Total: -1.00 -65.66 398.03 1.80 -63.86 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 0.88 Total: 21.71 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 7.18 Total: 7.13 kcal Atomic # 7 Polarization: -111.50 SS G_CDS: -8.24 Total: -119.75 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.05 Total: -19.45 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -65.66 1.80 -63.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049917968.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.086 kcal (2) G-P(sol) polarization free energy of solvation -65.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds