Wall clock time and date at job start Wed Apr 1 2020 04:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46906 * 109.46930 * 60.65875 * 3 2 1 5 5 C 1.46839 * 110.99877 * 294.20504 * 4 3 2 6 6 C 1.53036 * 109.52271 * 174.16309 * 5 4 3 7 7 C 1.53116 * 109.27887 * 59.17940 * 6 5 4 8 8 C 1.50697 * 109.52516 * 182.44138 * 7 6 5 9 9 O 1.21281 * 120.00188 * 86.78294 * 8 7 6 10 10 N 1.34778 * 120.00087 * 266.78230 * 8 7 6 11 11 C 1.44505 * 116.62961 * 2.95139 * 10 8 7 12 12 C 1.51641 * 112.65267 * 154.59775 * 11 10 8 13 13 C 1.51325 * 111.97989 * 42.75950 * 12 11 10 14 14 C 1.50713 * 113.54664 * 304.61104 * 13 12 11 15 15 H 1.08996 * 109.33542 * 169.06818 * 14 13 12 16 16 C 1.54182 * 110.50541 * 289.39300 * 14 13 12 17 17 N 1.46929 * 106.26132 * 151.09557 * 16 14 13 18 18 C 1.36942 * 125.37158 * 162.16940 * 17 16 14 19 19 H 1.07993 * 120.00120 * 359.97438 * 18 17 16 20 20 C 1.38813 * 119.99532 * 180.02562 * 18 17 16 21 21 N 1.31619 * 120.00062 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99920 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46852 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.46938 * 119.99530 * 22 20 18 25 25 H 1.48494 * 109.47048 * 239.99909 * 22 20 18 26 26 C 1.46814 * 109.24854 * 342.15017 * 17 16 14 27 27 C 1.44109 * 116.63300 * 182.69099 * 10 8 7 28 28 H 1.09002 * 109.09967 * 73.86744 * 27 10 8 29 29 C 1.53119 * 109.16303 * 302.34696 * 7 6 5 30 30 C 1.46847 * 110.99572 * 169.99410 * 4 3 2 31 31 H 4.40891 * 5.52161 * 180.02562 * 4 1 2 32 32 H 1.09000 * 109.46700 * 180.65539 * 3 2 1 33 33 H 1.08995 * 109.47552 * 300.65394 * 3 2 1 34 34 H 1.08999 * 109.46681 * 294.17578 * 5 4 3 35 35 H 1.08999 * 109.46530 * 54.14757 * 5 4 3 36 36 H 1.08994 * 109.50409 * 299.23996 * 6 5 4 37 37 H 1.08998 * 109.53508 * 179.13878 * 6 5 4 38 38 H 1.09006 * 109.57845 * 62.28292 * 7 6 5 39 39 H 1.09001 * 108.84760 * 275.41561 * 11 10 8 40 40 H 1.09000 * 108.84853 * 33.78089 * 11 10 8 41 41 H 1.09002 * 108.97177 * 163.40116 * 12 11 10 42 42 H 1.08993 * 108.97790 * 282.19850 * 12 11 10 43 43 H 1.09009 * 108.66900 * 65.65931 * 13 12 11 44 44 H 1.08990 * 108.66599 * 183.69058 * 13 12 11 45 45 H 1.09002 * 110.09328 * 270.29570 * 16 14 13 46 46 H 1.09000 * 110.09633 * 31.89470 * 16 14 13 47 47 H 0.97000 * 119.99541 * 180.02562 * 21 20 18 48 48 H 1.09000 * 109.84026 * 120.40332 * 26 17 16 49 49 H 1.09004 * 109.84006 * 241.30779 * 26 17 16 50 50 H 1.09002 * 109.50025 * 297.71537 * 29 7 6 51 51 H 1.08999 * 109.50582 * 177.59017 * 29 7 6 52 52 H 1.08998 * 109.46921 * 305.85790 * 30 4 3 53 53 H 1.09006 * 109.45956 * 65.82096 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1360 -0.6778 -1.2074 5 6 2.7821 -2.1028 -1.1905 6 6 3.1780 -2.7440 -2.5225 7 6 4.6847 -2.5756 -2.7364 8 6 5.0710 -3.1520 -4.0742 9 8 5.0022 -2.4668 -5.0725 10 7 5.4929 -4.4291 -4.1612 11 6 5.4844 -5.1989 -2.9383 12 6 5.3658 -6.6899 -3.1875 13 6 6.2439 -7.1443 -4.3331 14 6 5.9910 -6.3984 -5.6181 15 1 6.7777 -6.6361 -6.3342 16 6 4.6247 -6.7946 -6.2126 17 7 4.1498 -5.6264 -6.9666 18 6 3.1686 -5.6448 -7.9218 19 1 2.6771 -6.5729 -8.1733 20 6 2.8067 -4.4705 -8.5676 21 7 3.4061 -3.3395 -8.2614 22 14 1.4689 -4.4956 -9.8710 23 1 0.9575 -5.8808 -10.0289 24 1 0.3578 -3.6014 -9.4572 25 1 2.0282 -4.0247 -11.1635 26 6 4.8927 -4.4364 -6.5340 27 6 5.9004 -4.8873 -5.4653 28 1 6.8680 -4.4496 -5.7109 29 6 5.0340 -1.0852 -2.7014 30 6 4.5842 -0.4921 -1.3643 31 1 -1.0499 0.0001 -0.0002 32 1 3.0088 1.0284 0.0118 33 1 3.0097 -0.5231 0.8840 34 1 3.3115 -2.5990 -0.3771 35 1 1.7074 -2.2085 -1.0418 36 1 2.6385 -2.2575 -3.3350 37 1 2.9293 -3.8050 -2.5044 38 1 5.2263 -3.0952 -1.9459 39 1 6.4087 -5.0053 -2.3939 40 1 4.6429 -4.8764 -2.3251 41 1 5.6575 -7.2246 -2.2836 42 1 4.3284 -6.9288 -3.4213 43 1 7.2873 -7.0061 -4.0491 44 1 6.0683 -8.2057 -4.5076 45 1 4.7401 -7.6492 -6.8794 46 1 3.9238 -7.0347 -5.4131 47 1 3.1528 -2.5189 -8.7124 48 1 5.4197 -4.0004 -7.3827 49 1 4.2049 -3.7046 -6.1102 50 1 4.5236 -0.5726 -3.5169 51 1 6.1114 -0.9612 -2.8105 52 1 4.8185 0.5722 -1.3418 53 1 5.1052 -0.9957 -0.5499 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050207281.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:48 Heat of formation + Delta-G solvation = 44.952520 kcal Electronic energy + Delta-G solvation = -32428.655728 eV Core-core repulsion = 28494.902809 eV Total energy + Delta-G solvation = -3933.752919 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.15639 -40.19442 -38.87545 -37.05655 -35.53310 -34.63250 -33.75483 -33.07722 -31.83604 -31.40443 -29.15486 -27.99788 -27.32823 -25.71973 -24.66640 -24.19903 -23.38865 -22.57404 -21.24299 -20.29205 -19.28160 -19.01284 -18.74808 -17.94871 -17.30376 -16.99936 -16.88513 -16.20691 -16.08105 -15.85348 -15.67479 -15.64049 -15.19493 -14.97966 -14.71973 -14.38729 -14.30070 -14.11770 -13.86002 -13.81669 -13.66601 -13.51189 -13.05575 -12.94526 -12.90579 -12.70925 -12.55608 -12.36475 -12.17447 -12.06038 -11.88699 -11.75696 -11.73081 -11.56510 -11.49415 -11.42278 -11.32129 -11.26852 -11.02745 -10.76539 -10.13038 -9.35358 -9.26338 -8.80438 -7.78244 -5.18375 1.38950 1.41835 1.52082 1.74164 1.77502 1.94886 2.18203 2.47957 3.10696 3.34435 3.45486 3.54126 3.66301 3.73797 3.82823 3.84987 3.88023 4.03752 4.07250 4.12504 4.18449 4.22303 4.36664 4.40822 4.53164 4.54048 4.58450 4.62429 4.66803 4.71373 4.72435 4.74817 4.83976 4.86218 4.92676 4.95098 4.98413 5.08641 5.13808 5.17297 5.19853 5.22519 5.38845 5.40163 5.44729 5.49020 5.57180 5.86195 6.07414 6.11222 6.13530 6.29865 6.58323 6.74204 7.10470 7.42931 7.83261 8.45215 9.27197 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.009599 B = 0.003768 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.155990 B = 7428.259437 C = 9171.964666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.209 4.209 3 C 0.164 3.836 4 N -0.564 5.564 5 C 0.072 3.928 6 C -0.099 4.099 7 C -0.092 4.092 8 C 0.486 3.514 9 O -0.561 6.561 10 N -0.589 5.589 11 C 0.103 3.897 12 C -0.125 4.125 13 C -0.097 4.097 14 C -0.089 4.089 15 H 0.080 0.920 16 C 0.136 3.864 17 N -0.631 5.631 18 C -0.247 4.247 19 H 0.082 0.918 20 C -0.069 4.069 21 N -0.940 5.940 22 Si 0.976 3.024 23 H -0.260 1.260 24 H -0.295 1.295 25 H -0.292 1.292 26 C 0.177 3.823 27 C 0.144 3.856 28 H 0.046 0.954 29 C -0.099 4.099 30 C 0.069 3.931 31 H 0.238 0.762 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.031 0.969 37 H 0.075 0.925 38 H 0.126 0.874 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.119 0.881 42 H 0.050 0.950 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.036 0.964 46 H 0.022 0.978 47 H 0.240 0.760 48 H -0.011 1.011 49 H 0.054 0.946 50 H 0.042 0.958 51 H 0.078 0.922 52 H 0.092 0.908 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.381 -1.507 25.173 25.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.210 4.210 3 C 0.038 3.962 4 N -0.289 5.289 5 C -0.056 4.056 6 C -0.138 4.138 7 C -0.113 4.113 8 C 0.275 3.725 9 O -0.438 6.438 10 N -0.322 5.322 11 C -0.018 4.018 12 C -0.163 4.163 13 C -0.135 4.135 14 C -0.108 4.108 15 H 0.099 0.901 16 C 0.011 3.989 17 N -0.358 5.358 18 C -0.376 4.376 19 H 0.100 0.900 20 C -0.262 4.262 21 N -0.588 5.588 22 Si 0.804 3.196 23 H -0.184 1.184 24 H -0.223 1.223 25 H -0.219 1.219 26 C 0.052 3.948 27 C 0.038 3.962 28 H 0.064 0.936 29 C -0.137 4.137 30 C -0.058 4.058 31 H 0.255 0.745 32 H 0.128 0.872 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.144 0.856 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.137 0.863 42 H 0.068 0.932 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.054 0.946 46 H 0.040 0.960 47 H 0.049 0.951 48 H 0.007 0.993 49 H 0.072 0.928 50 H 0.061 0.939 51 H 0.097 0.903 52 H 0.111 0.889 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.094 -0.888 24.112 24.661 hybrid contribution -0.811 0.156 -1.335 1.570 sum 4.283 -0.733 22.777 23.188 Atomic orbital electron populations 1.25659 0.96960 1.00214 0.99494 1.23477 0.95328 1.01071 1.01122 1.19095 0.84347 1.01110 0.91598 1.61745 1.15441 1.13049 1.38697 1.21962 1.00933 0.87122 0.95549 1.21431 0.93452 1.00767 0.98122 1.21430 0.97969 0.98144 0.93748 1.21554 0.76729 0.82280 0.91920 1.90798 1.52803 1.61072 1.39161 1.46818 1.65253 1.11726 1.08413 1.21252 1.03519 0.92617 0.84443 1.21186 1.00438 0.94410 1.00262 1.20507 1.01119 1.00008 0.91864 1.21305 0.97535 0.92265 0.99731 0.90146 1.21612 0.93641 0.89962 0.93664 1.44767 1.42291 1.04798 1.43952 1.19453 1.11400 0.94467 1.12304 0.89974 1.25758 1.02492 0.95339 1.02621 1.70362 1.44945 0.98426 1.45043 0.85049 0.78319 0.77878 0.78359 1.18395 1.22266 1.21894 1.21403 0.92798 0.88788 0.91822 1.20628 0.96522 0.95749 0.83259 0.93635 1.21428 1.01183 0.92880 0.98255 1.22060 0.85719 1.02101 0.95873 0.74532 0.87208 0.90243 0.91487 0.91219 0.94966 0.90603 0.85584 0.89414 0.89492 0.86299 0.93165 0.89893 0.89699 0.94622 0.96033 0.95052 0.99319 0.92781 0.93949 0.90321 0.88941 0.91474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.92 19.25 74.32 1.43 -2.49 16 2 C -0.21 -4.31 12.34 31.13 0.38 -3.93 16 3 C 0.16 2.67 5.46 84.50 0.46 3.13 16 4 N -0.56 -11.85 4.63 -907.46 -4.21 -16.06 16 5 C 0.07 1.49 5.30 86.33 0.46 1.94 16 6 C -0.10 -2.74 5.17 30.64 0.16 -2.59 16 7 C -0.09 -2.41 1.71 -11.46 -0.02 -2.43 16 8 C 0.49 18.58 6.04 87.66 0.53 19.11 16 9 O -0.56 -28.97 13.03 -3.03 -0.04 -29.01 16 10 N -0.59 -20.01 3.09 -811.19 -2.51 -22.52 16 11 C 0.10 2.17 5.18 86.31 0.45 2.62 16 12 C -0.13 -2.38 5.83 29.60 0.17 -2.20 16 13 C -0.10 -2.12 5.17 29.30 0.15 -1.97 16 14 C -0.09 -3.02 3.05 -11.42 -0.03 -3.06 16 15 H 0.08 2.68 8.14 -2.39 -0.02 2.67 16 16 C 0.14 5.82 6.65 86.70 0.58 6.39 16 17 N -0.63 -35.57 3.39 -696.54 -2.36 -37.93 16 18 C -0.25 -15.08 10.26 84.03 0.86 -14.21 16 19 H 0.08 4.74 7.83 -2.91 -0.02 4.72 16 20 C -0.07 -4.30 5.48 84.86 0.47 -3.83 16 21 N -0.94 -63.68 10.26 21.65 0.22 -63.45 16 22 Si 0.98 49.83 29.55 68.60 2.03 51.86 16 23 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 24 H -0.30 -15.15 7.11 99.48 0.71 -14.45 16 25 H -0.29 -14.81 7.11 99.48 0.71 -14.10 16 26 C 0.18 10.01 4.13 86.54 0.36 10.37 16 27 C 0.14 5.96 3.16 45.37 0.14 6.10 16 28 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 29 C -0.10 -2.55 5.05 30.65 0.15 -2.40 16 30 C 0.07 1.22 5.46 86.33 0.47 1.69 16 31 H 0.24 2.95 7.80 -4.42 -0.03 2.91 16 32 H 0.11 1.46 7.99 -2.39 -0.02 1.44 16 33 H 0.08 0.92 8.12 -2.39 -0.02 0.90 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.07 1.56 7.11 -2.39 -0.02 1.55 16 36 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.08 1.98 7.11 -2.39 -0.02 1.96 16 38 H 0.13 2.22 6.46 -2.38 -0.02 2.21 16 39 H 0.09 1.30 8.14 -2.39 -0.02 1.29 16 40 H 0.09 1.59 5.27 -2.39 -0.01 1.58 16 41 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.05 1.17 6.99 -2.39 -0.02 1.15 16 43 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 44 H 0.08 1.61 8.10 -2.39 -0.02 1.59 16 45 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.02 0.91 6.69 -2.39 -0.02 0.89 16 47 H 0.24 16.00 8.31 -92.71 -0.77 15.23 16 48 H -0.01 -0.76 7.36 -2.39 -0.02 -0.78 16 49 H 0.05 3.49 4.41 -2.90 -0.01 3.47 16 50 H 0.04 1.48 7.78 -2.39 -0.02 1.46 16 51 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 52 H 0.09 1.40 8.02 -2.39 -0.02 1.38 16 53 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 Total: -1.00 -89.67 396.73 1.18 -88.49 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.88 Total: 16.38 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: 7.17 Total: 12.25 kcal Atomic # 7 Polarization: -131.11 SS G_CDS: -8.85 Total: -139.96 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.04 Total: -29.01 kcal Atomic # 14 Polarization: 49.83 SS G_CDS: 2.03 Total: 51.86 kcal Total: -89.67 1.18 -88.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050207281.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.439 kcal (2) G-P(sol) polarization free energy of solvation -89.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds