Wall clock time and date at job start Wed Apr 1 2020 02:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46871 * 2 1 4 4 C 1.52998 * 109.46836 * 119.99662 * 2 1 3 5 5 C 1.50699 * 109.46842 * 239.99900 * 2 1 3 6 6 C 1.38629 * 120.32092 * 60.00401 * 5 2 1 7 7 C 1.38595 * 118.48358 * 180.02562 * 6 5 2 8 8 C 1.39302 * 119.05746 * 359.97438 * 7 6 5 9 9 C 1.48180 * 119.72050 * 179.97438 * 8 7 6 10 10 O 1.21513 * 119.99666 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99704 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99753 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.49330 * 325.05251 * 12 11 9 14 14 C 1.52562 * 109.49208 * 205.00293 * 12 11 9 15 15 C 1.47097 * 114.32598 * 155.02331 * 14 12 11 16 16 C 1.54868 * 110.32054 * 62.80225 * 15 14 12 17 17 N 1.44569 * 109.60187 * 288.73250 * 16 15 14 18 18 C 1.36938 * 118.64757 * 270.72516 * 17 16 15 19 19 H 1.08004 * 119.99573 * 27.02621 * 18 17 16 20 20 C 1.38804 * 120.00346 * 207.02018 * 18 17 16 21 21 N 1.31626 * 120.00219 * 16.56610 * 20 18 17 22 22 Si 1.86800 * 120.00127 * 196.56568 * 20 18 17 23 23 H 1.48498 * 109.47243 * 94.74096 * 22 20 18 24 24 H 1.48507 * 109.47078 * 214.73920 * 22 20 18 25 25 H 1.48501 * 109.47075 * 334.73808 * 22 20 18 26 26 C 1.47607 * 122.71161 * 90.70434 * 17 16 15 27 27 C 1.50884 * 109.48676 * 85.11897 * 12 11 9 28 28 N 1.32716 * 120.55743 * 359.97438 * 8 7 6 29 29 C 1.31519 * 121.64509 * 359.70563 * 28 8 7 30 30 H 1.08998 * 109.47452 * 59.99713 * 1 2 3 31 31 H 1.08997 * 109.47603 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46945 * 300.00109 * 1 2 3 33 33 H 1.09001 * 109.47425 * 60.00185 * 3 2 1 34 34 H 1.09003 * 109.46858 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47583 * 299.99653 * 3 2 1 36 36 H 1.09000 * 109.47171 * 60.00569 * 4 2 1 37 37 H 1.09006 * 109.46628 * 179.97438 * 4 2 1 38 38 H 1.08996 * 109.47955 * 300.00086 * 4 2 1 39 39 H 1.07995 * 120.75823 * 359.97362 * 6 5 2 40 40 H 1.08001 * 120.46830 * 180.02562 * 7 6 5 41 41 H 0.96995 * 120.00741 * 0.02562 * 11 9 8 42 42 H 1.09003 * 108.51302 * 276.27430 * 14 12 11 43 43 H 1.09000 * 108.51513 * 33.77076 * 14 12 11 44 44 H 1.08996 * 109.32946 * 183.06382 * 15 14 12 45 45 H 1.08998 * 109.32964 * 302.71661 * 15 14 12 46 46 H 1.08996 * 109.45036 * 48.77938 * 16 15 14 47 47 H 1.08999 * 109.44677 * 168.69372 * 16 15 14 48 48 H 0.96998 * 120.00120 * 180.02562 * 21 20 18 49 49 H 1.08999 * 108.94680 * 78.57783 * 26 17 16 50 50 H 1.09001 * 108.94963 * 197.29370 * 26 17 16 51 51 H 1.09006 * 109.36944 * 332.04067 * 27 12 11 52 52 H 1.08997 * 109.36784 * 91.66250 * 27 12 11 53 53 H 1.07998 * 119.55454 * 180.30956 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.0323 -0.7104 -1.2305 6 6 1.7015 -0.2425 -2.4928 7 6 2.1837 -0.9255 -3.5982 8 6 2.9800 -2.0518 -3.4033 9 6 3.5029 -2.7934 -4.5747 10 8 3.2362 -2.4187 -5.6994 11 7 4.2742 -3.8835 -4.3925 12 6 4.7908 -4.6171 -5.5507 13 1 4.0533 -4.5960 -6.3531 14 6 5.0700 -6.0635 -5.1539 15 6 5.0285 -7.0176 -6.2727 16 6 6.1328 -6.6835 -7.3057 17 7 5.7867 -5.4695 -8.0103 18 6 5.0363 -5.5641 -9.1518 19 1 4.3630 -6.3976 -9.2878 20 6 5.1409 -4.5890 -10.1341 21 7 6.1675 -3.7653 -10.1370 22 14 3.8247 -4.4456 -11.4518 23 1 2.8221 -3.4299 -11.0416 24 1 4.4506 -4.0336 -12.7339 25 1 3.1551 -5.7594 -11.6276 26 6 6.2083 -4.1320 -7.5496 27 6 6.0700 -3.9728 -6.0250 28 7 3.2742 -2.4661 -2.1772 29 6 2.8352 -1.8334 -1.1111 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6767 1.9564 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 -1.7489 1.2493 37 1 3.1300 -0.7216 1.2490 38 1 1.6767 -0.2074 2.1393 39 1 1.0815 0.6336 -2.6121 40 1 1.9461 -0.5888 -4.5965 41 1 4.4868 -4.1829 -3.4947 42 1 6.0572 -6.1119 -4.6943 43 1 4.3315 -6.3677 -4.4121 44 1 5.1840 -8.0270 -5.8921 45 1 4.0545 -6.9614 -6.7588 46 1 7.0828 -6.5453 -6.7895 47 1 6.2233 -7.5034 -8.0182 48 1 6.2404 -3.0836 -10.8232 49 1 7.2500 -3.9737 -7.8287 50 1 5.5924 -3.3782 -8.0402 51 1 6.0561 -2.9125 -5.7721 52 1 6.9184 -4.4487 -5.5333 53 1 3.0994 -2.1973 -0.1292 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052388616.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:24 Heat of formation + Delta-G solvation = -12.250057 kcal Electronic energy + Delta-G solvation = -30829.208268 eV Core-core repulsion = 26892.974859 eV Total energy + Delta-G solvation = -3936.233409 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.92467 -40.74138 -39.20922 -37.74831 -36.37493 -34.54539 -33.39992 -32.77422 -32.41050 -31.25144 -28.44471 -28.09876 -27.89863 -26.26507 -25.24722 -24.82763 -24.20683 -22.05786 -21.60656 -20.99920 -20.34989 -19.12328 -18.56624 -17.90322 -17.23630 -16.77058 -16.51463 -16.32486 -16.07804 -15.90687 -15.62544 -15.27634 -15.22950 -14.85635 -14.72212 -14.47083 -14.32313 -14.16434 -14.02573 -13.71882 -13.63962 -13.27639 -13.12049 -13.02744 -12.86818 -12.78523 -12.52953 -12.52186 -12.16588 -12.09054 -12.02761 -11.90988 -11.76476 -11.70487 -11.54638 -11.43808 -11.35354 -11.23601 -10.88021 -10.50894 -10.45348 -10.22828 -9.94214 -8.64664 -7.86086 -5.31585 -0.42880 0.19528 1.40028 1.45403 1.51298 1.67866 2.05350 2.50180 2.79374 3.07439 3.27987 3.53201 3.65814 3.69345 3.78276 3.84821 3.90722 4.05788 4.06412 4.09240 4.24916 4.37041 4.44288 4.46759 4.47133 4.66824 4.69817 4.79447 4.80692 4.80717 4.90440 4.92786 4.94730 4.96971 5.01321 5.06285 5.12464 5.13398 5.18381 5.20750 5.23099 5.32974 5.34140 5.43975 5.48580 5.49383 5.54920 5.58232 5.61873 5.69154 5.74904 6.41487 6.41830 6.77645 7.18376 7.19139 7.96058 8.34945 9.19165 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.016880 B = 0.002430 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.351090 B =11517.635110 C =12467.789176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.024 4.024 3 C -0.141 4.141 4 C -0.150 4.150 5 C -0.091 4.091 6 C -0.075 4.075 7 C -0.120 4.120 8 C 0.053 3.947 9 C 0.557 3.443 10 O -0.575 6.575 11 N -0.693 5.693 12 C 0.161 3.839 13 H 0.053 0.947 14 C -0.103 4.103 15 C -0.132 4.132 16 C 0.148 3.852 17 N -0.604 5.604 18 C -0.259 4.259 19 H 0.065 0.935 20 C -0.051 4.051 21 N -0.935 5.935 22 Si 0.956 3.044 23 H -0.297 1.297 24 H -0.291 1.291 25 H -0.263 1.263 26 C 0.197 3.803 27 C -0.131 4.131 28 N -0.464 5.464 29 C 0.092 3.908 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.165 0.835 40 H 0.135 0.865 41 H 0.417 0.583 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.037 0.963 46 H 0.049 0.951 47 H 0.041 0.959 48 H 0.246 0.754 49 H -0.001 1.001 50 H 0.026 0.974 51 H 0.045 0.955 52 H 0.076 0.924 53 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.152 6.346 29.221 31.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 C -0.198 4.198 4 C -0.207 4.207 5 C -0.093 4.093 6 C -0.100 4.100 7 C -0.141 4.141 8 C -0.083 4.083 9 C 0.343 3.657 10 O -0.454 6.454 11 N -0.343 5.343 12 C 0.057 3.943 13 H 0.071 0.929 14 C -0.141 4.141 15 C -0.172 4.172 16 C 0.021 3.979 17 N -0.326 5.326 18 C -0.390 4.390 19 H 0.083 0.917 20 C -0.246 4.246 21 N -0.581 5.581 22 Si 0.785 3.215 23 H -0.225 1.225 24 H -0.217 1.217 25 H -0.187 1.187 26 C 0.071 3.929 27 C -0.171 4.171 28 N -0.175 5.175 29 C -0.069 4.069 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.183 0.817 40 H 0.153 0.847 41 H 0.255 0.745 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.110 0.890 45 H 0.056 0.944 46 H 0.067 0.933 47 H 0.059 0.941 48 H 0.056 0.944 49 H 0.017 0.983 50 H 0.045 0.955 51 H 0.064 0.936 52 H 0.094 0.906 53 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -8.718 5.915 28.366 30.260 hybrid contribution -0.847 1.070 -1.389 1.947 sum -9.565 6.984 26.977 29.462 Atomic orbital electron populations 1.21927 0.92528 1.02267 1.03035 1.19579 0.96429 0.95466 0.90986 1.21931 1.01114 0.93713 1.03037 1.22025 1.01662 1.00760 0.96256 1.21428 0.95983 0.95753 0.96105 1.21704 0.97905 0.99681 0.90732 1.22186 0.95867 0.94433 1.01581 1.20872 0.99909 0.96181 0.91362 1.18453 0.78514 0.81001 0.87758 1.90836 1.60461 1.68340 1.25794 1.45952 1.49931 1.27539 1.10915 1.20279 0.95021 0.92113 0.86887 0.92867 1.20515 1.03147 0.91483 0.98906 1.21295 1.00061 0.99113 0.96729 1.20959 0.95471 0.87859 0.93575 1.43841 1.61727 1.01049 1.25981 1.19480 1.15763 1.08886 0.94851 0.91690 1.25742 0.98845 1.00268 0.99769 1.70214 1.29352 1.22456 1.36084 0.85403 0.79240 0.78100 0.78718 1.22473 1.21735 1.18745 1.20557 0.95880 0.86635 0.89836 1.22231 0.97783 0.99500 0.97554 1.67522 1.20865 1.31065 0.98075 1.23382 0.93818 0.92105 0.97550 0.92312 0.92822 0.90433 0.90418 0.92871 0.92318 0.91672 0.91705 0.90559 0.81745 0.84677 0.74514 0.90125 0.90576 0.88987 0.94381 0.93317 0.94078 0.94442 0.98263 0.95507 0.93623 0.90580 0.79134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.29 71.98 0.60 -0.48 16 2 C -0.02 -0.21 0.86 -52.93 -0.05 -0.25 16 3 C -0.14 -1.10 8.29 71.98 0.60 -0.51 16 4 C -0.15 -0.91 7.14 71.98 0.51 -0.40 16 5 C -0.09 -1.33 4.77 -19.69 -0.09 -1.42 16 6 C -0.07 -1.30 8.84 22.45 0.20 -1.11 16 7 C -0.12 -3.07 9.63 22.61 0.22 -2.85 16 8 C 0.05 1.58 6.75 41.91 0.28 1.86 16 9 C 0.56 20.79 7.63 86.89 0.66 21.45 16 10 O -0.58 -27.21 15.99 -3.76 -0.06 -27.27 16 11 N -0.69 -22.92 4.92 -449.07 -2.21 -25.13 16 12 C 0.16 6.15 2.06 44.16 0.09 6.24 16 13 H 0.05 2.61 6.92 -2.39 -0.02 2.59 16 14 C -0.10 -3.09 4.69 28.61 0.13 -2.95 16 15 C -0.13 -4.39 5.74 29.40 0.17 -4.22 16 16 C 0.15 6.07 5.65 87.38 0.49 6.57 16 17 N -0.60 -31.46 2.27 -698.44 -1.59 -33.05 16 18 C -0.26 -15.04 9.43 84.03 0.79 -14.24 16 19 H 0.07 3.68 7.88 -2.91 -0.02 3.66 16 20 C -0.05 -3.07 4.84 84.86 0.41 -2.65 16 21 N -0.93 -59.22 11.11 21.65 0.24 -58.98 16 22 Si 0.96 48.74 29.58 68.60 2.03 50.77 16 23 H -0.30 -15.50 7.11 99.48 0.71 -14.79 16 24 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 25 H -0.26 -12.57 7.11 99.48 0.71 -11.86 16 26 C 0.20 10.40 4.67 86.48 0.40 10.81 16 27 C -0.13 -5.42 5.38 30.22 0.16 -5.26 16 28 N -0.46 -11.20 9.54 -184.91 -1.76 -12.96 16 29 C 0.09 1.57 10.15 84.82 0.86 2.43 16 30 H 0.06 0.46 7.45 -2.39 -0.02 0.44 16 31 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.06 0.47 7.45 -2.39 -0.02 0.46 16 36 H 0.06 0.38 7.54 -2.39 -0.02 0.36 16 37 H 0.06 0.38 7.51 -2.38 -0.02 0.37 16 38 H 0.08 0.30 8.14 -2.39 -0.02 0.29 16 39 H 0.17 1.93 7.24 -2.91 -0.02 1.91 16 40 H 0.14 3.75 7.64 -2.91 -0.02 3.73 16 41 H 0.42 11.14 7.93 -92.71 -0.74 10.40 16 42 H 0.08 2.08 7.36 -2.39 -0.02 2.06 16 43 H 0.08 1.94 8.04 -2.39 -0.02 1.92 16 44 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 45 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.05 1.84 8.07 -2.39 -0.02 1.82 16 47 H 0.04 1.71 7.99 -2.39 -0.02 1.69 16 48 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 49 H 0.00 -0.04 8.03 -2.39 -0.02 -0.06 16 50 H 0.03 1.65 6.41 -2.39 -0.02 1.64 16 51 H 0.05 1.96 7.85 -2.38 -0.02 1.94 16 52 H 0.08 2.71 7.32 -2.39 -0.02 2.69 16 53 H 0.19 2.07 5.90 -2.91 -0.02 2.05 16 Total: -1.00 -77.53 409.37 3.26 -74.27 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 0.16 Total: 19.34 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 6.45 Total: 13.01 kcal Atomic # 7 Polarization: -124.80 SS G_CDS: -5.32 Total: -130.12 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.06 Total: -27.27 kcal Atomic # 14 Polarization: 48.74 SS G_CDS: 2.03 Total: 50.77 kcal Total: -77.53 3.26 -74.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052388616.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.017 kcal (2) G-P(sol) polarization free energy of solvation -77.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds