Wall clock time and date at job start Wed Apr 1 2020 04:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46900 * 109.46728 * 207.83783 * 3 2 1 5 5 C 1.48529 * 111.00554 * 307.39924 * 4 3 2 6 6 C 1.54934 * 103.22912 * 200.27949 * 5 4 3 7 7 C 1.54597 * 102.92105 * 37.41269 * 6 5 4 8 8 C 1.47907 * 110.99845 * 190.00087 * 4 3 2 9 9 H 1.08996 * 109.91720 * 26.48982 * 8 4 3 10 10 C 1.50703 * 110.07894 * 265.29046 * 8 4 3 11 11 O 1.21271 * 120.00461 * 0.85898 * 10 8 4 12 12 N 1.34783 * 119.99373 * 180.85919 * 10 8 4 13 13 C 1.46920 * 120.71438 * 0.02562 * 12 10 8 14 14 C 1.53190 * 108.94339 * 125.75279 * 13 12 10 15 15 C 1.53191 * 109.27394 * 55.29397 * 14 13 12 16 16 C 1.52068 * 109.67850 * 300.04761 * 15 14 13 17 17 C 1.54346 * 110.60248 * 295.85927 * 16 15 14 18 18 C 1.54469 * 102.85904 * 276.43865 * 17 16 15 19 19 N 1.47080 * 107.30245 * 338.52982 * 18 17 16 20 20 C 1.36933 * 125.62155 * 179.03917 * 19 18 17 21 21 H 1.08007 * 120.00123 * 180.02562 * 20 19 18 22 22 C 1.38813 * 120.00232 * 0.02986 * 20 19 18 23 23 N 1.31612 * 119.99897 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99909 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47409 * 59.99682 * 24 22 20 26 26 H 1.48500 * 109.47033 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47075 * 299.99587 * 24 22 20 28 28 C 1.47582 * 108.75167 * 359.02088 * 19 18 17 29 29 C 1.47105 * 120.70661 * 179.72394 * 12 10 8 30 30 H 4.40889 * 5.52146 * 180.02562 * 4 1 2 31 31 H 1.08999 * 109.46990 * 87.84086 * 3 2 1 32 32 H 1.09001 * 109.47440 * 327.84035 * 3 2 1 33 33 H 1.09002 * 110.67056 * 81.84058 * 5 4 3 34 34 H 1.08999 * 110.66437 * 318.71748 * 5 4 3 35 35 H 1.09000 * 110.72047 * 279.05575 * 6 5 4 36 36 H 1.09001 * 110.72140 * 155.77197 * 6 5 4 37 37 H 1.09005 * 110.30714 * 96.95804 * 7 6 5 38 38 H 1.09005 * 110.30628 * 219.12370 * 7 6 5 39 39 H 1.09005 * 109.55642 * 245.59318 * 13 12 10 40 40 H 1.09003 * 109.56102 * 5.91028 * 13 12 10 41 41 H 1.09000 * 109.50030 * 175.23681 * 14 13 12 42 42 H 1.08998 * 109.50470 * 295.35297 * 14 13 12 43 43 H 1.09001 * 109.43549 * 60.11450 * 15 14 13 44 44 H 1.09005 * 109.43520 * 179.97438 * 15 14 13 45 45 H 1.08997 * 110.73205 * 34.78008 * 17 16 15 46 46 H 1.08998 * 110.73844 * 158.09519 * 17 16 15 47 47 H 1.09003 * 109.87585 * 97.95828 * 18 17 16 48 48 H 1.08996 * 109.87294 * 219.10112 * 18 17 16 49 49 H 0.97007 * 119.99959 * 179.97438 * 23 22 20 50 50 H 1.08998 * 110.37496 * 264.44861 * 28 19 18 51 51 H 1.08999 * 110.37589 * 142.08906 * 28 19 18 52 52 H 1.09001 * 109.57947 * 352.07466 * 29 12 10 53 53 H 1.09003 * 109.57726 * 112.46670 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 1.2256 0.6468 5 6 2.5179 2.4318 0.0382 6 6 3.4923 3.5683 0.4373 7 6 4.8769 2.8882 0.3357 8 6 4.5937 1.3794 0.4564 9 1 4.9051 0.8689 -0.4549 10 6 5.3327 0.8115 1.6407 11 8 4.7162 0.3081 2.5557 12 7 6.6789 0.8632 1.6829 13 6 7.4413 1.4700 0.5834 14 6 8.3650 2.5500 1.1554 15 6 9.2455 1.9355 2.2480 16 6 8.3690 1.3769 3.3581 17 6 7.5840 2.5100 4.0525 18 6 8.6018 3.0543 5.0791 19 7 9.5946 1.9950 5.3146 20 6 10.6775 2.0878 6.1476 21 1 11.3516 1.2504 6.2523 22 6 10.9089 3.2580 6.8575 23 7 10.0878 4.2785 6.7295 24 14 12.3857 3.3841 7.9943 25 1 13.6318 3.1874 7.2109 26 1 12.4079 4.7261 8.6300 27 1 12.2919 2.3395 9.0456 28 6 9.2310 0.8156 4.5053 29 6 7.4158 0.3191 2.8340 30 1 -1.0503 -0.0005 0.0000 31 1 3.0093 -0.0379 -1.0269 32 1 3.0098 -0.8692 0.5470 33 1 1.5272 2.6098 0.4565 34 1 2.4665 2.3321 -1.0460 35 1 3.2998 3.9008 1.4573 36 1 3.4197 4.4017 -0.2615 37 1 5.3379 3.1107 -0.6267 38 1 5.5214 3.2186 1.1503 39 1 8.0382 0.7046 0.0873 40 1 6.7537 1.9198 -0.1329 41 1 8.9958 2.9477 0.3604 42 1 7.7648 3.3541 1.5810 43 1 9.8459 1.1322 1.8210 44 1 9.9043 2.7018 2.6567 45 1 7.3077 3.2833 3.3358 46 1 6.7013 2.1157 4.5559 47 1 9.0936 3.9410 4.6790 48 1 8.0929 3.2992 6.0113 49 1 10.2493 5.0962 7.2259 50 1 8.6548 0.1088 5.1023 51 1 10.1263 0.3371 4.1083 52 1 6.7130 0.0414 3.6195 53 1 7.9838 -0.5576 2.5227 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054147433.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:32 Heat of formation + Delta-G solvation = 44.877730 kcal Electronic energy + Delta-G solvation = -32048.777184 eV Core-core repulsion = 28115.021022 eV Total energy + Delta-G solvation = -3933.756163 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.87765 -40.42666 -38.85782 -37.25302 -35.18172 -34.61426 -33.04496 -32.22258 -31.99495 -30.69552 -30.04283 -27.33460 -27.21673 -26.45413 -25.31991 -23.28563 -22.84875 -22.26996 -21.98758 -20.31418 -19.43694 -19.16071 -18.60893 -17.99228 -17.29080 -17.04156 -16.75499 -16.38699 -15.96669 -15.75092 -15.59893 -15.42579 -15.01470 -14.93471 -14.77253 -14.47256 -14.13388 -13.96262 -13.89809 -13.71637 -13.46971 -13.35106 -13.22594 -12.93652 -12.85768 -12.76510 -12.43473 -12.25682 -12.14801 -12.07323 -11.98766 -11.86314 -11.76636 -11.68675 -11.48747 -11.43537 -11.22891 -11.16090 -11.14856 -10.69615 -10.63882 -9.50530 -9.38176 -8.88924 -7.84045 -5.19615 1.44472 1.48371 1.54456 1.62420 1.75371 1.89721 2.04133 2.49914 3.10665 3.33521 3.34328 3.51882 3.59051 3.64374 3.74742 3.85413 3.91170 3.95086 4.04131 4.19597 4.24662 4.26675 4.33298 4.37375 4.50143 4.52845 4.56530 4.60453 4.65158 4.71509 4.77203 4.82203 4.85696 4.90012 4.93852 4.96466 5.00198 5.00266 5.08263 5.12977 5.17484 5.25072 5.28433 5.44601 5.51467 5.54140 5.59462 5.66362 5.76770 5.81747 5.93398 6.18998 6.55612 6.68084 7.10086 7.32316 7.77861 8.43838 9.26342 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.021809 B = 0.002505 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.578470 B =11173.422766 C =11192.470438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.218 4.218 3 C 0.158 3.842 4 N -0.522 5.522 5 C 0.044 3.956 6 C -0.122 4.122 7 C -0.122 4.122 8 C 0.057 3.943 9 H 0.112 0.888 10 C 0.515 3.485 11 O -0.573 6.573 12 N -0.605 5.605 13 C 0.102 3.898 14 C -0.129 4.129 15 C -0.093 4.093 16 C -0.067 4.067 17 C -0.112 4.112 18 C 0.195 3.805 19 N -0.622 5.622 20 C -0.240 4.240 21 H 0.083 0.917 22 C -0.069 4.069 23 N -0.953 5.953 24 Si 0.980 3.020 25 H -0.273 1.273 26 H -0.296 1.296 27 H -0.280 1.280 28 C 0.141 3.859 29 C 0.140 3.860 30 H 0.247 0.753 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.104 0.896 37 H 0.120 0.880 38 H 0.066 0.934 39 H 0.092 0.908 40 H 0.114 0.886 41 H 0.102 0.898 42 H 0.057 0.943 43 H 0.077 0.923 44 H 0.041 0.959 45 H 0.075 0.925 46 H 0.038 0.962 47 H 0.014 0.986 48 H -0.009 1.009 49 H 0.245 0.755 50 H 0.013 0.987 51 H 0.052 0.948 52 H 0.061 0.939 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.776 -4.817 -24.886 28.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.219 4.219 3 C 0.032 3.968 4 N -0.247 5.247 5 C -0.083 4.083 6 C -0.160 4.160 7 C -0.160 4.160 8 C -0.055 4.055 9 H 0.129 0.871 10 C 0.304 3.696 11 O -0.451 6.451 12 N -0.338 5.338 13 C -0.019 4.019 14 C -0.167 4.167 15 C -0.131 4.131 16 C -0.068 4.068 17 C -0.150 4.150 18 C 0.070 3.930 19 N -0.348 5.348 20 C -0.369 4.369 21 H 0.101 0.899 22 C -0.262 4.262 23 N -0.602 5.602 24 Si 0.808 3.192 25 H -0.199 1.199 26 H -0.222 1.222 27 H -0.206 1.206 28 C 0.016 3.984 29 C 0.016 3.984 30 H 0.263 0.737 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.122 0.878 37 H 0.138 0.862 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.132 0.868 41 H 0.121 0.879 42 H 0.076 0.924 43 H 0.096 0.904 44 H 0.059 0.941 45 H 0.094 0.906 46 H 0.057 0.943 47 H 0.032 0.968 48 H 0.009 0.991 49 H 0.055 0.945 50 H 0.030 0.970 51 H 0.070 0.930 52 H 0.080 0.920 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.123 -5.008 -23.727 27.573 hybrid contribution 0.727 0.260 1.063 1.314 sum -12.396 -4.749 -22.664 26.265 Atomic orbital electron populations 1.25689 0.96730 0.98266 0.99693 1.23132 0.94839 1.02337 1.01556 1.19199 0.85271 0.93718 0.98609 1.64289 1.03084 1.02445 1.54902 1.23223 0.98470 0.88557 0.98046 1.22517 0.93431 0.97869 1.02208 1.22598 0.98570 0.90189 1.04597 1.22374 0.88609 0.98916 0.95591 0.87101 1.21061 0.81708 0.78383 0.88478 1.90677 1.67744 1.46514 1.40170 1.48163 1.05198 1.59436 1.20985 1.22163 0.95384 0.96243 0.88143 1.21972 0.98261 0.98003 0.98472 1.21176 0.97068 1.00324 0.94486 1.21169 0.95229 0.95249 0.95193 1.22624 0.96521 0.98245 0.97605 1.20806 0.88168 0.90305 0.93714 1.44759 1.27666 1.11942 1.50445 1.19436 1.01321 0.98930 1.17237 0.89882 1.25674 1.01994 0.96136 1.02355 1.70208 1.39436 1.04474 1.46117 0.85135 0.79139 0.76322 0.78633 1.19869 1.22189 1.20580 1.21599 0.96449 0.89477 0.90910 1.21061 0.93470 0.95131 0.88719 0.73684 0.89873 0.89960 0.90895 0.91400 0.92734 0.87789 0.86175 0.91512 0.88979 0.86819 0.87944 0.92399 0.90434 0.94053 0.90634 0.94268 0.96759 0.99055 0.94534 0.96956 0.92988 0.92027 0.89766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.06 19.25 74.32 1.43 -1.63 16 2 C -0.22 -4.38 12.28 31.13 0.38 -4.00 16 3 C 0.16 3.02 5.53 84.50 0.47 3.49 16 4 N -0.52 -11.20 4.53 -873.44 -3.96 -15.16 16 5 C 0.04 0.71 5.57 86.65 0.48 1.19 16 6 C -0.12 -1.79 7.06 31.80 0.22 -1.57 16 7 C -0.12 -1.68 4.76 31.47 0.15 -1.53 16 8 C 0.06 1.01 2.01 44.31 0.09 1.10 16 9 H 0.11 1.25 7.35 -2.39 -0.02 1.24 16 10 C 0.52 13.82 6.94 87.66 0.61 14.43 16 11 O -0.57 -21.60 15.90 -3.00 -0.05 -21.64 16 12 N -0.60 -14.19 2.84 -821.23 -2.33 -16.52 16 13 C 0.10 1.50 5.60 86.36 0.48 1.98 16 14 C -0.13 -2.47 5.91 30.72 0.18 -2.29 16 15 C -0.09 -2.61 4.67 30.35 0.14 -2.46 16 16 C -0.07 -2.24 0.55 -52.08 -0.03 -2.27 16 17 C -0.11 -4.50 5.67 31.55 0.18 -4.32 16 18 C 0.20 10.21 5.01 86.77 0.43 10.65 16 19 N -0.62 -33.00 3.39 -692.78 -2.35 -35.35 16 20 C -0.24 -13.80 10.28 84.03 0.86 -12.94 16 21 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 22 C -0.07 -4.03 5.49 84.86 0.47 -3.57 16 23 N -0.95 -59.23 10.31 21.65 0.22 -59.00 16 24 Si 0.98 46.81 29.55 68.60 2.03 48.84 16 25 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 26 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 27 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 28 C 0.14 5.90 6.16 86.54 0.53 6.43 16 29 C 0.14 4.06 5.07 85.85 0.44 4.50 16 30 H 0.25 2.08 7.80 -4.40 -0.03 2.04 16 31 H 0.08 1.08 7.81 -2.39 -0.02 1.06 16 32 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.07 1.34 7.90 -2.39 -0.02 1.32 16 34 H 0.07 0.81 8.02 -2.39 -0.02 0.79 16 35 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.12 0.74 7.49 -2.38 -0.02 0.72 16 38 H 0.07 1.22 6.77 -2.38 -0.02 1.20 16 39 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.11 1.01 4.28 -2.39 -0.01 1.00 16 41 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.06 1.29 5.89 -2.39 -0.01 1.27 16 43 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.04 1.49 7.83 -2.38 -0.02 1.47 16 45 H 0.08 2.75 6.09 -2.39 -0.01 2.74 16 46 H 0.04 1.68 7.85 -2.39 -0.02 1.66 16 47 H 0.01 0.82 7.39 -2.39 -0.02 0.80 16 48 H -0.01 -0.53 7.50 -2.39 -0.02 -0.55 16 49 H 0.25 14.86 8.31 -92.70 -0.77 14.09 16 50 H 0.01 0.54 8.00 -2.39 -0.02 0.52 16 51 H 0.05 2.03 8.02 -2.39 -0.02 2.01 16 52 H 0.06 2.20 6.83 -2.39 -0.02 2.18 16 53 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -80.87 401.58 1.97 -78.90 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 0.88 Total: 12.72 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 7.52 Total: 7.21 kcal Atomic # 7 Polarization: -117.61 SS G_CDS: -8.42 Total: -126.02 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.05 Total: -21.64 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -80.87 1.97 -78.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054147433.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.774 kcal (2) G-P(sol) polarization free energy of solvation -80.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds