Wall clock time and date at job start Wed Apr 1 2020 03:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47377 * 2 1 4 4 C 1.53000 * 109.47405 * 120.00445 * 2 1 3 5 5 C 1.50698 * 109.47630 * 174.99599 * 4 2 1 6 6 C 1.35452 * 126.06374 * 90.01921 * 5 4 2 7 7 N 1.35535 * 108.86977 * 179.71555 * 6 5 4 8 8 H 0.97002 * 125.67831 * 180.28608 * 7 6 5 9 9 C 1.37648 * 108.64363 * 0.27227 * 7 6 5 10 10 C 1.46681 * 126.23680 * 180.02562 * 9 7 6 11 11 O 1.21695 * 120.00349 * 179.97438 * 10 9 7 12 12 N 1.34782 * 119.99445 * 359.97209 * 10 9 7 13 13 C 1.46501 * 119.99737 * 179.97438 * 12 10 9 14 14 H 1.09006 * 112.88921 * 334.66397 * 13 12 10 15 15 C 1.53946 * 113.66461 * 106.01311 * 13 12 10 16 16 C 1.54256 * 87.18901 * 89.78658 * 15 13 12 17 17 H 1.08997 * 113.66130 * 270.26508 * 16 15 13 18 18 N 1.46494 * 113.74840 * 139.21580 * 16 15 13 19 19 C 1.36941 * 119.99932 * 107.77830 * 18 16 15 20 20 H 1.07997 * 120.00252 * 359.97438 * 19 18 16 21 21 C 1.38813 * 119.99827 * 180.02562 * 19 18 16 22 22 N 1.31616 * 120.00528 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99913 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47107 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47277 * 119.99626 * 23 21 19 26 26 H 1.48491 * 109.47312 * 240.00008 * 23 21 19 27 27 C 1.52905 * 86.77372 * 24.73462 * 16 15 13 28 28 C 1.52915 * 121.13676 * 100.82557 * 27 16 15 29 29 C 1.53950 * 86.78367 * 100.81341 * 28 27 16 30 30 C 1.52912 * 121.13488 * 209.37818 * 27 16 15 31 31 C 1.37877 * 107.53343 * 359.97438 * 9 7 6 32 32 H 1.08998 * 109.46591 * 299.99817 * 1 2 3 33 33 H 1.09005 * 109.46669 * 59.99256 * 1 2 3 34 34 H 1.08993 * 109.47304 * 179.97438 * 1 2 3 35 35 H 1.09000 * 109.47108 * 240.00258 * 2 1 3 36 36 H 1.08995 * 109.47376 * 299.99825 * 3 2 1 37 37 H 1.08998 * 109.47111 * 60.00501 * 3 2 1 38 38 H 1.09001 * 109.46940 * 179.97438 * 3 2 1 39 39 H 1.08998 * 109.46893 * 54.99627 * 4 2 1 40 40 H 1.09001 * 109.46541 * 295.00087 * 4 2 1 41 41 H 1.08002 * 125.56918 * 359.97438 * 6 5 4 42 42 H 0.97000 * 119.99977 * 0.02562 * 12 10 9 43 43 H 1.08994 * 113.58383 * 204.34363 * 15 13 12 44 44 H 1.09004 * 113.57983 * 335.13605 * 15 13 12 45 45 H 0.97007 * 120.00362 * 287.77519 * 18 16 15 46 46 H 0.96998 * 120.00557 * 179.97438 * 22 21 19 47 47 H 1.08996 * 113.66122 * 215.28912 * 28 27 16 48 48 H 1.09000 * 113.66169 * 346.34167 * 28 27 16 49 49 H 1.08997 * 113.58364 * 270.13322 * 29 28 27 50 50 H 1.08997 * 113.57991 * 139.33741 * 29 28 27 51 51 H 1.08999 * 113.65981 * 13.66014 * 30 27 16 52 52 H 1.08998 * 113.66374 * 144.70978 * 30 27 16 53 53 H 1.08002 * 126.45587 * 180.02562 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.8296 1.1888 6 6 4.4267 0.0735 1.6751 7 7 5.6841 -0.3739 1.4392 8 1 6.5030 0.0815 1.6900 9 6 5.6057 -1.5824 0.7848 10 6 6.7374 -2.4056 0.3455 11 8 6.5366 -3.4609 -0.2262 12 7 7.9999 -1.9930 0.5751 13 6 9.1303 -2.8155 0.1368 14 1 8.8781 -3.8726 0.0529 15 6 9.8608 -2.2547 -1.0968 16 6 10.7613 -1.4765 -0.1154 17 1 10.3786 -0.4883 0.1397 18 7 12.1749 -1.4585 -0.4994 19 6 12.7399 -0.3062 -0.9771 20 1 12.1433 0.5891 -1.0712 21 6 14.0792 -0.2892 -1.3415 22 7 14.8063 -1.3804 -1.2274 23 14 14.8499 1.2824 -1.9939 24 1 13.8275 2.3591 -2.0252 25 1 15.9705 1.6890 -1.1083 26 1 15.3640 1.0487 -3.3672 27 6 10.4192 -2.5522 0.9161 28 6 11.3975 -3.6843 1.2321 29 6 11.7799 -2.8856 2.4914 30 6 10.3881 -2.2326 2.4111 31 6 4.2694 -1.8787 0.6184 32 1 -0.3632 0.5138 0.8900 33 1 -0.3633 0.5140 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.6768 1.9564 -0.8899 37 1 1.6768 1.9563 0.8900 38 1 3.1301 1.4424 0.0005 39 1 1.6054 -1.7198 1.2950 40 1 1.7517 -0.1584 2.1369 41 1 4.1718 0.9971 2.1735 42 1 8.1599 -1.1520 1.0311 43 1 10.3940 -3.0131 -1.6699 44 1 9.2364 -1.6141 -1.7195 45 1 12.7107 -2.2627 -0.4152 46 1 15.7421 -1.3687 -1.4824 47 1 10.9108 -4.6353 1.4481 48 1 12.2082 -3.7763 0.5094 49 1 12.5999 -2.1855 2.3315 50 1 11.9196 -3.5069 3.3760 51 1 10.3925 -1.1649 2.6304 52 1 9.6178 -2.7756 2.9587 53 1 3.8615 -2.7575 0.1413 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078782634.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:36 Heat of formation + Delta-G solvation = 26.107503 kcal Electronic energy + Delta-G solvation = -30268.898869 eV Core-core repulsion = 26334.328768 eV Total energy + Delta-G solvation = -3934.570101 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.41979 -41.74346 -39.75348 -37.17596 -36.39763 -35.82003 -33.92069 -32.36814 -31.76181 -30.36187 -27.89634 -27.30993 -26.73140 -26.45415 -25.54446 -24.50457 -23.31348 -21.68036 -21.26364 -21.08419 -20.38263 -19.70470 -19.39796 -18.47637 -17.35077 -16.94170 -16.68395 -16.39725 -16.20002 -15.95939 -15.62523 -15.43904 -15.17034 -14.92254 -14.55781 -14.38699 -14.27103 -14.18497 -13.87260 -13.52080 -13.46254 -13.35093 -13.20014 -12.97967 -12.90531 -12.80846 -12.72358 -12.52250 -12.32919 -12.12998 -11.94457 -11.88614 -11.76937 -11.59873 -11.42259 -11.37303 -11.31276 -11.04566 -10.93002 -10.71723 -10.05763 -9.71986 -9.04551 -8.96459 -7.94825 -5.22396 0.47411 1.45971 1.47057 1.56105 1.78258 1.98276 2.24777 2.35404 2.55030 3.35875 3.44310 3.63270 3.73539 3.86407 3.90626 4.00021 4.06216 4.09837 4.14646 4.23480 4.24528 4.31996 4.41368 4.53538 4.58241 4.62806 4.71332 4.81383 4.84204 4.86873 4.90485 4.93402 4.97446 5.03606 5.08923 5.11072 5.11852 5.14259 5.18565 5.19859 5.21429 5.31280 5.41198 5.47779 5.55107 5.56313 5.59679 5.62393 5.64392 5.85374 5.98800 6.27021 6.45823 6.62454 7.12436 7.34232 8.10862 8.34105 9.28300 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.014181 B = 0.002239 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.058500 B =12503.870288 C =13615.970940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.037 4.037 5 C -0.185 4.185 6 C 0.048 3.952 7 N -0.526 5.526 8 H 0.430 0.570 9 C -0.074 4.074 10 C 0.588 3.412 11 O -0.578 6.578 12 N -0.691 5.691 13 C 0.149 3.851 14 H 0.088 0.912 15 C -0.174 4.174 16 C 0.181 3.819 17 H 0.083 0.917 18 N -0.719 5.719 19 C -0.238 4.238 20 H 0.077 0.923 21 C -0.075 4.075 22 N -0.967 5.967 23 Si 0.968 3.032 24 H -0.265 1.265 25 H -0.294 1.294 26 H -0.298 1.298 27 C -0.111 4.111 28 C -0.114 4.114 29 C -0.130 4.130 30 C -0.109 4.109 31 C -0.118 4.118 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.046 0.954 37 H 0.066 0.934 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.206 0.794 42 H 0.407 0.593 43 H 0.068 0.932 44 H 0.055 0.945 45 H 0.377 0.623 46 H 0.250 0.750 47 H 0.096 0.904 48 H 0.048 0.952 49 H 0.058 0.942 50 H 0.080 0.920 51 H 0.073 0.927 52 H 0.096 0.904 53 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.329 4.538 11.246 28.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.203 4.203 4 C -0.075 4.075 5 C -0.191 4.191 6 C -0.089 4.089 7 N -0.122 5.122 8 H 0.270 0.730 9 C -0.187 4.187 10 C 0.378 3.622 11 O -0.458 6.458 12 N -0.340 5.340 13 C 0.043 3.957 14 H 0.106 0.894 15 C -0.217 4.217 16 C 0.071 3.929 17 H 0.100 0.900 18 N -0.357 5.357 19 C -0.370 4.370 20 H 0.095 0.905 21 C -0.267 4.267 22 N -0.618 5.618 23 Si 0.798 3.202 24 H -0.190 1.190 25 H -0.222 1.222 26 H -0.226 1.226 27 C -0.113 4.113 28 C -0.152 4.152 29 C -0.167 4.167 30 C -0.146 4.146 31 C -0.145 4.145 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.223 0.777 42 H 0.243 0.757 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.211 0.789 46 H 0.058 0.942 47 H 0.114 0.886 48 H 0.067 0.933 49 H 0.077 0.923 50 H 0.098 0.902 51 H 0.091 0.909 52 H 0.114 0.886 53 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -26.222 4.046 10.813 28.651 hybrid contribution 1.742 0.610 -0.776 2.002 sum -24.480 4.656 10.037 26.864 Atomic orbital electron populations 1.21831 0.94575 1.01794 1.02092 1.21076 0.95747 0.96605 0.97735 1.21854 1.01083 0.95471 1.01848 1.20028 0.88364 1.00840 0.98238 1.19592 0.96504 0.96010 1.06957 1.22416 0.81917 1.01084 1.03508 1.41955 1.09502 1.16380 1.44394 0.73049 1.20035 0.94440 0.91837 1.12386 1.17400 0.82179 0.84583 0.78050 1.90807 1.85391 1.25059 1.44499 1.45295 1.04194 1.24724 1.59806 1.21394 0.84433 0.94920 0.94979 0.89409 1.24203 0.99109 1.00781 0.97558 1.21597 0.83916 0.95408 0.91998 0.89956 1.42550 1.06577 1.10975 1.75591 1.19688 0.93184 0.90909 1.33257 0.90536 1.25511 0.97473 1.00053 1.03692 1.69811 1.07407 1.28558 1.55990 0.85144 0.78289 0.79779 0.76962 1.18978 1.22153 1.22605 1.23334 0.94133 0.98412 0.95418 1.22521 0.97746 0.96891 0.98018 1.22646 0.97345 0.99153 0.97571 1.22612 0.97143 1.01241 0.93614 1.21301 0.90753 1.00262 1.02212 0.91724 0.92898 0.92808 0.93175 0.93460 0.91472 0.92925 0.91713 0.89660 0.77745 0.75671 0.91366 0.92589 0.78886 0.94153 0.88563 0.93296 0.92305 0.90161 0.90871 0.88576 0.85190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.19 71.98 0.66 -0.82 16 2 C -0.09 -1.16 2.91 -10.79 -0.03 -1.19 16 3 C -0.15 -1.60 8.91 71.98 0.64 -0.96 16 4 C -0.04 -0.45 5.18 29.85 0.15 -0.30 16 5 C -0.18 -2.97 4.82 -20.12 -0.10 -3.06 16 6 C 0.05 0.56 10.43 83.48 0.87 1.43 16 7 N -0.53 -7.37 5.99 -183.61 -1.10 -8.47 16 8 H 0.43 3.66 8.19 -92.71 -0.76 2.90 16 9 C -0.07 -1.67 7.06 40.35 0.28 -1.38 16 10 C 0.59 16.71 7.79 86.45 0.67 17.38 16 11 O -0.58 -21.39 16.50 -4.33 -0.07 -21.46 16 12 N -0.69 -17.00 5.06 -445.11 -2.25 -19.25 16 13 C 0.15 4.45 4.09 45.28 0.19 4.64 16 14 H 0.09 2.88 7.50 -2.38 -0.02 2.86 16 15 C -0.17 -6.22 7.71 31.34 0.24 -5.98 16 16 C 0.18 6.69 4.29 45.39 0.19 6.88 16 17 H 0.08 2.88 8.10 -2.39 -0.02 2.86 16 18 N -0.72 -34.55 5.33 -321.08 -1.71 -36.26 16 19 C -0.24 -12.74 9.97 84.03 0.84 -11.90 16 20 H 0.08 3.91 7.83 -2.91 -0.02 3.88 16 21 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 22 N -0.97 -58.24 13.06 21.65 0.28 -57.95 16 23 Si 0.97 45.41 29.55 68.60 2.03 47.43 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 25 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 26 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 27 C -0.11 -3.31 0.91 -52.31 -0.05 -3.36 16 28 C -0.11 -3.54 7.47 30.89 0.23 -3.31 16 29 C -0.13 -3.75 8.08 31.23 0.25 -3.49 16 30 C -0.11 -2.67 7.46 30.88 0.23 -2.44 16 31 C -0.12 -2.67 10.59 22.57 0.24 -2.43 16 32 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 34 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.05 0.64 6.42 -2.39 -0.02 0.63 16 39 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.08 0.73 8.14 -2.39 -0.02 0.72 16 41 H 0.21 0.86 8.06 -2.91 -0.02 0.83 16 42 H 0.41 7.63 7.71 -92.71 -0.71 6.92 16 43 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 44 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.38 19.66 5.92 -92.70 -0.55 19.11 16 46 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 47 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 48 H 0.05 1.84 6.42 -2.39 -0.02 1.82 16 49 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 50 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 51 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 52 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 53 H 0.13 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -70.88 423.80 2.06 -68.82 By element: Atomic # 1 Polarization: 42.28 SS G_CDS: -1.10 Total: 41.18 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: 5.99 Total: -14.04 kcal Atomic # 7 Polarization: -117.15 SS G_CDS: -4.78 Total: -121.93 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.07 Total: -21.46 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -70.88 2.06 -68.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078782634.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.925 kcal (2) G-P(sol) polarization free energy of solvation -70.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds