Wall clock time and date at job start Wed Apr 1 2020 03:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47096 * 2 1 4 4 C 1.52999 * 109.46924 * 119.99969 * 2 1 3 5 5 C 1.50694 * 109.47229 * 175.00228 * 4 2 1 6 6 C 1.35457 * 126.06787 * 269.95514 * 5 4 2 7 7 N 1.35527 * 108.87247 * 179.76688 * 6 5 4 8 8 H 0.97004 * 125.68170 * 180.30675 * 7 6 5 9 9 C 1.37658 * 108.64497 * 0.43565 * 7 6 5 10 10 C 1.46677 * 126.23028 * 179.82737 * 9 7 6 11 11 O 1.21696 * 119.99326 * 179.69086 * 10 9 7 12 12 N 1.34770 * 120.00369 * 359.69373 * 10 9 7 13 13 C 1.46504 * 119.99827 * 179.97438 * 12 10 9 14 14 H 1.09001 * 112.94665 * 26.91031 * 13 12 10 15 15 C 1.53950 * 113.66645 * 255.49818 * 13 12 10 16 16 C 1.53950 * 87.29592 * 220.79793 * 15 13 12 17 17 H 1.09006 * 113.65941 * 270.17111 * 16 15 13 18 18 N 1.46499 * 113.66414 * 139.20642 * 16 15 13 19 19 C 1.36939 * 119.99933 * 104.77943 * 18 16 15 20 20 H 1.08001 * 119.99700 * 359.72658 * 19 18 16 21 21 C 1.38810 * 120.00095 * 179.71972 * 19 18 16 22 22 N 1.31624 * 119.99740 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00044 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47144 * 90.00258 * 23 21 19 25 25 H 1.48500 * 109.47140 * 210.00775 * 23 21 19 26 26 H 1.48502 * 109.46967 * 330.00206 * 23 21 19 27 27 C 1.52914 * 86.78449 * 24.73365 * 16 15 13 28 28 C 1.52907 * 121.14350 * 209.38294 * 27 16 15 29 29 C 1.53946 * 86.78434 * 209.37620 * 28 27 16 30 30 C 1.52906 * 121.13637 * 100.81404 * 27 16 15 31 31 C 1.37873 * 107.53213 * 359.57329 * 9 7 6 32 32 H 1.08993 * 109.47330 * 300.00440 * 1 2 3 33 33 H 1.09008 * 109.46762 * 60.00487 * 1 2 3 34 34 H 1.08997 * 109.46896 * 179.97438 * 1 2 3 35 35 H 1.08993 * 109.47330 * 239.99560 * 2 1 3 36 36 H 1.09002 * 109.46928 * 179.97438 * 3 2 1 37 37 H 1.08996 * 109.47288 * 300.00002 * 3 2 1 38 38 H 1.09001 * 109.46881 * 59.99901 * 3 2 1 39 39 H 1.08998 * 109.47365 * 54.99770 * 4 2 1 40 40 H 1.09006 * 109.46854 * 295.00144 * 4 2 1 41 41 H 1.07999 * 125.56049 * 0.02562 * 6 5 4 42 42 H 0.96999 * 120.00018 * 0.02562 * 12 10 9 43 43 H 1.08998 * 113.57862 * 106.19494 * 15 13 12 44 44 H 1.08999 * 113.64870 * 335.40788 * 15 13 12 45 45 H 0.97001 * 119.99790 * 284.49917 * 18 16 15 46 46 H 0.96998 * 119.99409 * 179.97438 * 22 21 19 47 47 H 1.09001 * 113.66043 * 323.84687 * 28 27 16 48 48 H 1.09000 * 113.66310 * 94.90448 * 28 27 16 49 49 H 1.09000 * 113.58131 * 270.13296 * 29 28 27 50 50 H 1.08999 * 113.65580 * 139.34498 * 29 28 27 51 51 H 1.08996 * 113.66552 * 265.09839 * 30 27 16 52 52 H 1.09001 * 113.66060 * 36.16135 * 30 27 16 53 53 H 1.07993 * 126.45844 * 180.29885 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5418 -0.8294 1.1890 6 6 4.2467 -1.8475 0.6400 7 7 5.5699 -1.5863 0.7729 8 1 6.2926 -2.1531 0.4607 9 6 5.7177 -0.3842 1.4271 10 6 6.9871 0.2632 1.7749 11 8 6.9855 1.3346 2.3520 12 7 8.1550 -0.3284 1.4553 13 6 9.4229 0.3186 1.8023 14 1 9.3425 0.9728 2.6704 15 6 10.1334 0.9694 0.6016 16 6 11.4520 0.4240 1.1794 17 1 11.9428 1.1087 1.8713 18 7 12.3629 -0.1096 0.1637 19 6 13.4678 0.6079 -0.2100 20 1 13.6652 1.5692 0.2410 21 6 14.3340 0.0997 -1.1682 22 7 14.0930 -1.0717 -1.7180 23 14 15.8407 1.0788 -1.6784 24 1 16.9866 0.7136 -0.8075 25 1 16.1756 0.7712 -3.0921 26 1 15.5577 2.5301 -1.5414 27 6 10.6065 -0.6472 1.8692 28 6 11.0458 -1.2689 3.1953 29 6 10.2969 -2.5377 2.7491 30 6 10.5052 -2.0626 1.2995 31 6 4.4552 0.1031 1.6907 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8934 -0.5139 -0.8899 36 1 3.1300 1.4424 0.0005 37 1 1.6767 1.9563 -0.8899 38 1 1.6766 1.9563 0.8900 39 1 1.6053 -1.7198 1.2952 40 1 1.7515 -0.1582 2.1370 41 1 3.8233 -2.7224 0.1692 42 1 8.1563 -1.1822 0.9950 43 1 10.0759 2.0579 0.5986 44 1 9.8627 0.5290 -0.3579 45 1 12.1855 -0.9730 -0.2412 46 1 14.6982 -1.4266 -2.3879 47 1 12.1241 -1.4040 3.2792 48 1 10.6085 -0.7877 4.0702 49 1 9.2510 -2.5572 3.0555 50 1 10.8239 -3.4623 2.9848 51 1 9.6360 -2.2156 0.6599 52 1 11.4316 -2.4209 0.8506 53 1 4.2166 1.0306 2.1898 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078782636.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:45 Heat of formation + Delta-G solvation = 26.110245 kcal Electronic energy + Delta-G solvation = -30325.799922 eV Core-core repulsion = 26391.229940 eV Total energy + Delta-G solvation = -3934.569982 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.42846 -41.76379 -39.70900 -37.19151 -36.42183 -35.68078 -34.20122 -32.33296 -31.75921 -30.47485 -27.91220 -27.33556 -26.83724 -26.37876 -25.46206 -24.62612 -22.92349 -21.78217 -21.42936 -21.03279 -20.45716 -19.62614 -19.39717 -18.53226 -17.50463 -16.99933 -16.66021 -16.36685 -16.13180 -15.92403 -15.71008 -15.36241 -15.15044 -14.93913 -14.68608 -14.39757 -14.35009 -14.03178 -13.92751 -13.55793 -13.48662 -13.20751 -13.14752 -13.02670 -12.88767 -12.83577 -12.78025 -12.39115 -12.31617 -12.30327 -12.11394 -11.85421 -11.76043 -11.61586 -11.42010 -11.40437 -11.35601 -11.09571 -10.96239 -10.67627 -10.07735 -9.70237 -9.05707 -8.95607 -7.96168 -5.22922 0.47862 1.46644 1.46964 1.55450 1.78668 2.03702 2.24875 2.35646 2.55619 3.34313 3.37877 3.55422 3.71264 3.84041 3.89544 3.95491 4.07616 4.10940 4.12326 4.23867 4.28567 4.32936 4.43962 4.49758 4.54053 4.58966 4.68665 4.71878 4.85029 4.88115 4.91229 4.92555 4.96194 5.03113 5.07014 5.08389 5.10548 5.12515 5.17825 5.19959 5.25038 5.32645 5.39419 5.42406 5.49544 5.52905 5.56076 5.61423 5.66512 5.86278 5.98823 6.26694 6.45534 6.61666 7.11526 7.34050 8.09790 8.34937 9.26716 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.016905 B = 0.002124 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.897030 B =13178.317837 C =13736.644531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 C -0.148 4.148 4 C -0.037 4.037 5 C -0.186 4.186 6 C 0.045 3.955 7 N -0.527 5.527 8 H 0.428 0.572 9 C -0.078 4.078 10 C 0.586 3.414 11 O -0.577 6.577 12 N -0.701 5.701 13 C 0.165 3.835 14 H 0.107 0.893 15 C -0.170 4.170 16 C 0.163 3.837 17 H 0.073 0.927 18 N -0.716 5.716 19 C -0.242 4.242 20 H 0.072 0.928 21 C -0.073 4.073 22 N -0.966 5.966 23 Si 0.969 3.031 24 H -0.287 1.287 25 H -0.296 1.296 26 H -0.274 1.274 27 C -0.112 4.112 28 C -0.123 4.123 29 C -0.121 4.121 30 C -0.109 4.109 31 C -0.111 4.111 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.042 0.958 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.086 0.914 40 H 0.064 0.936 41 H 0.208 0.792 42 H 0.405 0.595 43 H 0.053 0.947 44 H 0.069 0.931 45 H 0.379 0.621 46 H 0.251 0.749 47 H 0.073 0.927 48 H 0.074 0.926 49 H 0.091 0.909 50 H 0.074 0.926 51 H 0.073 0.927 52 H 0.070 0.930 53 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.231 -6.248 6.657 27.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 C -0.206 4.206 4 C -0.075 4.075 5 C -0.192 4.192 6 C -0.092 4.092 7 N -0.124 5.124 8 H 0.268 0.732 9 C -0.191 4.191 10 C 0.375 3.625 11 O -0.457 6.457 12 N -0.351 5.351 13 C 0.060 3.940 14 H 0.125 0.875 15 C -0.212 4.212 16 C 0.052 3.948 17 H 0.091 0.909 18 N -0.354 5.354 19 C -0.374 4.374 20 H 0.090 0.910 21 C -0.265 4.265 22 N -0.616 5.616 23 Si 0.798 3.202 24 H -0.214 1.214 25 H -0.223 1.223 26 H -0.199 1.199 27 C -0.114 4.114 28 C -0.161 4.161 29 C -0.158 4.158 30 C -0.147 4.147 31 C -0.138 4.138 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.104 0.896 40 H 0.082 0.918 41 H 0.224 0.776 42 H 0.242 0.758 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.213 0.787 46 H 0.059 0.941 47 H 0.091 0.909 48 H 0.093 0.907 49 H 0.109 0.891 50 H 0.093 0.907 51 H 0.092 0.908 52 H 0.089 0.911 53 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -25.883 -5.423 7.007 27.357 hybrid contribution 1.656 0.036 -1.081 1.977 sum -24.227 -5.387 5.926 25.517 Atomic orbital electron populations 1.21832 0.94423 1.02262 1.01737 1.21074 0.95780 0.95631 0.98186 1.21867 1.00633 0.96845 1.01241 1.20036 0.88353 1.01438 0.97676 1.19610 0.96337 0.96084 1.07134 1.22448 0.81500 1.01760 1.03456 1.41948 1.08880 1.17066 1.44471 0.73212 1.20116 0.94100 0.92359 1.12553 1.17441 0.82965 0.84114 0.77932 1.90801 1.87544 1.23018 1.44370 1.45714 1.04758 1.24724 1.59900 1.21797 0.80141 0.94249 0.97821 0.87493 1.24138 0.99185 0.99873 0.98028 1.21405 0.88127 0.94721 0.90529 0.90897 1.42396 1.25799 1.22080 1.45151 1.19655 1.00414 1.00703 1.16643 0.90958 1.25474 1.02269 0.98330 1.00422 1.69789 1.39844 1.19859 1.32140 0.85209 0.79937 0.78335 0.76702 1.21436 1.22282 1.19865 1.23292 0.95127 0.94721 0.98306 1.22684 1.00299 0.97230 0.95870 1.22766 1.00925 0.97437 0.94694 1.22417 1.01673 0.93369 0.97263 1.21261 0.90362 1.00004 1.02210 0.92715 0.92861 0.91677 0.91351 0.93906 0.93121 0.92976 0.89558 0.91759 0.77569 0.75791 0.92778 0.91256 0.78746 0.94053 0.90850 0.90686 0.89087 0.90720 0.90815 0.91114 0.85271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.19 71.98 0.66 -0.75 16 2 C -0.09 -1.09 2.91 -10.79 -0.03 -1.12 16 3 C -0.15 -2.38 8.92 71.98 0.64 -1.74 16 4 C -0.04 -0.45 5.18 29.85 0.15 -0.30 16 5 C -0.19 -3.01 4.78 -20.12 -0.10 -3.10 16 6 C 0.05 0.55 11.80 83.48 0.99 1.54 16 7 N -0.53 -7.69 5.99 -183.62 -1.10 -8.79 16 8 H 0.43 4.01 8.19 -92.71 -0.76 3.25 16 9 C -0.08 -1.80 7.06 40.35 0.28 -1.51 16 10 C 0.59 16.81 7.79 86.45 0.67 17.48 16 11 O -0.58 -21.30 16.53 -4.34 -0.07 -21.37 16 12 N -0.70 -17.56 5.30 -445.10 -2.36 -19.92 16 13 C 0.17 4.93 4.08 45.28 0.18 5.11 16 14 H 0.11 3.40 7.54 -2.39 -0.02 3.38 16 15 C -0.17 -6.10 7.68 31.23 0.24 -5.86 16 16 C 0.16 6.35 4.35 45.28 0.20 6.55 16 17 H 0.07 2.91 8.12 -2.38 -0.02 2.89 16 18 N -0.72 -34.87 5.34 -321.55 -1.72 -36.59 16 19 C -0.24 -13.28 9.98 84.03 0.84 -12.44 16 20 H 0.07 3.87 7.83 -2.91 -0.02 3.84 16 21 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 22 N -0.97 -57.66 13.06 21.65 0.28 -57.38 16 23 Si 0.97 46.00 29.55 68.60 2.03 48.03 16 24 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 25 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 26 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 27 C -0.11 -3.38 1.06 -52.31 -0.06 -3.43 16 28 C -0.12 -3.31 7.84 30.88 0.24 -3.07 16 29 C -0.12 -2.70 8.08 31.23 0.25 -2.45 16 30 C -0.11 -3.00 6.77 30.89 0.21 -2.79 16 31 C -0.11 -2.51 9.26 22.57 0.21 -2.30 16 32 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.04 0.85 6.41 -2.39 -0.02 0.84 16 37 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 41 H 0.21 0.86 8.06 -2.91 -0.02 0.84 16 42 H 0.40 8.01 5.79 -92.71 -0.54 7.47 16 43 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 45 H 0.38 19.34 6.12 -92.71 -0.57 18.77 16 46 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 47 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 48 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 49 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 50 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 51 H 0.07 1.68 6.42 -2.39 -0.02 1.67 16 52 H 0.07 2.42 6.96 -2.39 -0.02 2.40 16 53 H 0.13 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -70.41 421.12 2.18 -68.24 By element: Atomic # 1 Polarization: 42.54 SS G_CDS: -0.94 Total: 41.60 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: 6.06 Total: -13.82 kcal Atomic # 7 Polarization: -117.78 SS G_CDS: -4.89 Total: -122.67 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.07 Total: -21.37 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -70.41 2.18 -68.24 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078782636.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.346 kcal (2) G-P(sol) polarization free energy of solvation -70.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds